Dynamic Systems Commons^™

Approximation Via Degree Reduction Of Nonlinearities With Applications To Turbulent Flows, Flame Fronts, And Magnetohydrodynamics, Matthew Enlow

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

We perform an analytical and computational investigation on the effectiveness of a locally bounded truncation function, which we call a calming function, when applied to the nonlinear terms of several dissipative partial differential equations. In particular, the 3D Navier-Stokes equations of incompressible fluid flow, the 2D Kuramoto-Sivashinsky equations of laminar flame fronts, and the 2D MHD-Boussinesq equations of magnetohydrodynamics. Each of these equations have open questions about the global existence and uniqueness of their solutions. These calming functions effectively reduce the algebraic degree of select nonlinear terms, thus one can verify global wellposedness for these "calmed systems." More specifically, in …

Convolutional Neural Network-Based Gene Prediction Using Buffalograss As A Model System, Michael Morikone

Complex Biosystems Program: Dissertations and Student Research

The task of gene prediction has been largely stagnant in algorithmic improvements compared to when algorithms were first developed for predicting genes thirty years ago. Rather than iteratively improving the underlying algorithms in gene prediction tools by utilizing better performing models, most current approaches update existing tools through incorporating increasing amounts of extrinsic data to improve gene prediction performance. The traditional method of predicting genes is done using Hidden Markov Models (HMMs). These HMMs are constrained by having strict assumptions made about the independence of genes that do not always hold true. To address this, a Convolutional Neural Network (CNN) …

Modeling Predator–Prey Interaction In A Two Patch System, Marc Wade

UCARE: Research Products

In this study we examine predator-prey relationships in the context of a two patch system. What is meant by a two patch system is that prey live in a habitat that consists of type 1 patches with an abundance of food and type 2 patches with no food. In our study, we will be assuming that predators cannot enter the first type of patch. We combine three well-established ecological theories: migration theory, optimal foraging theory, and the standard predator-prey model in order to answer the motivating question: "Under what environmental conditions is a predator population stable when predation can only …

An Information Theory-Based Approach To Assessing Spatial Patterns In Complex Systems, Tarsha Eason, Wen Ching-Chuang, Shana Sundstrom, Heriberto Cabezas

School of Natural Resources: Faculty Publications

Given the intensity and frequency of environmental change, the linked and cross-scale nature of social-ecological systems, and the proliferation of big data, methods that can help synthesize complex system behavior over a geographical area are of great value. Fisher information evaluates order in data and has been established as a robust and effective tool for capturing changes in system dynamics, including the detection of regimes and regime shifts. The methods developed to compute Fisher information can accommodate multivariate data of various types and requires no a priori decisions about system drivers, making it a unique and powerful tool. However, the …

Two-Source Energy Balance Model To Calculate E, T, And Et: Comparison Of Priestley-Taylor And Penman-Monteith Formulations And Two Time Scaling Methods, Paul D. Colaizzi, Nurit Agam, Judy A. Tolk, Steven R. Evett, Terry A. Howell, Prasanna H. Gowda, Susan A. O'Shaughnessy, William P. Kustas, Martha C. Anderson

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The two-source energy balance (TSEB) model calculates the energy balance of the soil-canopy-atmosphere continuum, where transpiration is initially determined by the Priestley-Taylor equation. The TSEB was revised recently using the Penman-Monteith equation to replace the Priestley-Taylor formulation, thus better accounting for the impact of large and varying vapor pressure deficits (VPD) typical of advective, semiarid climates. This study is a comparison of the Priestley- Taylor and Penman-Monteith versions of the TSEB (termed TSEB-PT and TSEB-PM, respectively). Evaporation (E), transpiration (T), and evapotranspiration (ET) calculated by the TSEB-PT and TSEB-PM versions were compared to measurements obtained with microlysimeters, sap flow gauges, …

A Population Model For Walleye In Nebraska Irrigation Reservoirs, Robert A. Kill

School of Natural Resources: Dissertations, Theses, and Student Research

Understanding how and why fish population size changes between years is a central theme in fisheries ecology. Fishery agencies have limited time and financial resources, thus there is a need for a quantitative way to direct the limited time and financial resources so agencies can manage fisheries more efficiently. I developed a tool for fishery managers that synthesizes common population indices and evaluated the relative importance of those indices given varying uncertainty in age-0 walleye Sander vitreus survival. Under most circumstances, I determined that resources are best utilized in reducing age-0 survival uncertainty when understanding walleye population growth. I applied …

Modeling And Mathematical Analysis Of Plant Models In Ecology, Eric A. Eager

Department of Mathematics: Dissertations, Theses, and Student Research

Population dynamics tries to explain in a simple mechanistic way the variations of the size and structure of biological populations. In this dissertation we use mathematical modeling and analysis to study the various aspects of the dynamics of plant populations and their seed banks.

In Chapter 2 we investigate the impact of structural model uncertainty by considering different nonlinear recruitment functions in an integral projection model for Cirsium canescens. We show that, while having identical equilibrium populations, these two models can elicit drastically different transient dynamics. We then derive a formula for the sensitivity of the equilibrium population to …

Neural Spike Renormalization. Part I — Universal Number 1, Bo Deng

Department of Mathematics: Faculty Publications

For a class of circuit models for neurons, it has been shown that the transmembrane electrical potentials in spike bursts have an inverse correlation with the intra-cellular energy conversion: the fewer spikes per burst the more energetic each spike is. Here we demonstrate that as the per-spike energy goes down to zero, a universal constant to the bifurcation of spike-bursts emerges in a similar way as Feigenbaum’s constant does to the period-doubling bifurcation to chaos generation, and the new universal constant is the first natural number 1.

Neural Spike Renormalization. Part Ii — Multiversal Chaos, Bo Deng

Department of Mathematics: Faculty Publications

Reported here for the first time is a chaotic infinite-dimensional system which contains infinitely many copies of every deterministic and stochastic dynamical system of all finite dimensions. The system is the renormalizing operator of spike maps that was used in a previous paper to show that the first natural number 1 is a universal constant in the generation of metastable and plastic spike-bursts of a class of circuit models of neurons.

Metastability And Plasticity In A Conceptual Model Of Neurons, Bo Deng

Department of Mathematics: Faculty Publications

For a new class of neuron models we demonstrate here that typical membrane action potentials and spike-bursts are only transient states but appear to be asymptotically stable; and yet such metastable states are plastic — being able to dynamically change from one action potential to another with different pulse frequencies and from one spike-burst to another with different spike-per-burst numbers. The pulse and spike-burst frequencies change with individual ions’ pump currents while their corresponding metastable-plastic states maintain the same transmembrane voltage and current profiles in range. It is also demonstrated that the plasticity requires two one-way ion pumps operating in …

From Energy Gradient And Natural Selection To Biodiversity And Stability Of Ecosystems, Bo Deng

Department of Mathematics: Faculty Publications

The purpose of this paper is to incorporate well-established ecological principles into a foodweb model consisting of four trophic levels --- abiotic resources, plants, herbivores, and carnivores. The underlining principles include Kimura's neutral theory of genetic evolution, Liebig's Law of the Minimum for plant growth, Holling's functionals for herbivore foraging and carnivore predation, the One-Life Rule for all organisms, and Lotka-Volterra's model for intraand interspecific competitions. Numerical simulations of the model led to the following statistical findings: (a) particular foodwebs can give contradicting observations on biodiversity and productivity, in particular, all known functional forms -- - positive, negative, sigmoidal, and …

Nonlinear Dynamics Of Infant Sitting Postural Control, Joan E. Deffeyes

Department of Psychology: Dissertations, Theses, and Student Research

Sitting is one of the first developmental milestones that an infant achieves. Thus measurements of sitting posture present an opportunity to assess sensorimotor development at a young age, in order to identify infants who might benefit from therapeutic intervention, and to monitor the efficacy of the intervention. Sitting postural sway data was collected using a force plate from infants with typical development, and from infants with delayed development, where the delay in development was due to cerebral palsy in most of the infants in the study. The center of pressure time series from the infant sitting was subjected to a …

Conceptual Circuit Models Of Neurons, Bo Deng

Department of Mathematics: Faculty Publications

A systematic circuit approach tomodel neurons with ion pump is presented here by which the voltage-gated current channels are modeled as conductors, the diffusion-induced current channels are modeled as negative resistors, and the one-way ion pumps are modeled as one-way inductors. The newly synthesized models are different from the type of models based on Hodgkin-Huxley (HH) approach which aggregates the electro, the diffusive, and the pump channels of each ion into one conductance channel. We show that our new models not only recover many known properties of the HH type models but also exhibit some new that cannot be extracted …