Applied Mathematics Commons^™

Quantification Of Antiviral Drug Tenofovir (Tfv) By Surface-Enhanced Raman Spectroscopy (Sers) Using Cumulative Distribution Functions (Cdfs), Marguerite R. Butler, Jana Hrncirova, Meredith Clark, Sucharita Dutta, John B. Cooper

Chemistry & Biochemistry Faculty Publications

Surface-enhanced Raman spectroscopy (SERS) is an ultrasensitive spectroscopic technique that generates signal-enhanced fingerprint vibrational spectra of small molecules. However, without rigorous control of SERS substrate active sites, geometry, surface area, or surface functionality, SERS is notoriously irreproducible, complicating the consistent quantitative analysis of small molecules. While evaporatively prepared samples yield significant SERS enhancement resulting in lower detection limits, the distribution of these enhancements along the SERS surface is inherently stochastic. Acquiring spatially resolved SERS spectra of these dried surfaces, we have shown that this enhancement is governed by a power law as a function of analyte concentration. Consequently, by definition, …

Using A Degree-Based Network Model To Understand And Control Traffic Jams In The Atlanta Metropolitan Area, Ian Salamone-Lent, Theresa Washington, Asma Azizi

The Kennesaw Journal of Undergraduate Research

Traffic congestion is an enduring problem for major metropolitan areas, such as Atlanta, GA. Our goal is to understand the nature of traffic congestion patterns in the highway system of Cobb County in Atlanta, GA. We created a road network representative of the Cobb County highway system and then superimposed a degree-based SIR model to simulate traffic congestion on that network. The model’s parameters, propagation and dissipation rates, were estimated using empirical traffic data, which are vehicles’ speed time series and speed limit of each road in the network. We then conducted a local sensitivity analysis of the model’s key …

Mathematical Modeling Of Microscale Biology In Polyelectrolyte Brushes, William J. Ceely

CGU Theses & Dissertations

Biological macromolecules including nucleic acids, proteins, and glycosaminoglycans are typically anionic and can span domains of up to hundreds of nanometers and even micron length scales. The structures exist in crowded environments that are dominated by multivalent electrostatic interactions that can be modeled using mean-field continuum approaches that represent underlying molecular nanoscale biophysics. In this thesis, we develop such models for polyelectrolyte brushes using both steady state modified Poisson-Boltzmann models and transient modified Poisson-Nernst-Planck models that incorporate important ion-specific (Hofmeister) effects. The transient model enables observation of the relative physical effects as an initial non-equilibrium state relaxes to the steady …

Reducing Generalization Error In Multiclass Classification Through Factorized Cross Entropy Loss, Oleksandr Horban

CMC Senior Theses

This paper introduces Factorized Cross Entropy Loss, a novel approach to multiclass classification which modifies the standard cross entropy loss by decomposing its weight matrix W into two smaller matrices, U and V, where UV is a low rank approximation of W. Factorized Cross Entropy Loss reduces generalization error from the conventional O( sqrt(k / n) ) to O( sqrt(r / n) ), where k is the number of classes, n is the sample size, and r is the reduced inner dimension of U and V.

Unveiling The Power Of Shor's Algorithm: Cryptography In A Post Quantum World, Dylan Phares

CMC Senior Theses

Shor's Algorithm is an extremely powerful tool, in utilizing this tool it is important to understand how it works and why it works. As well as the vast implications it could have for cryptography

Quantification Of Antiretroviral Drug Emtricitabine In Human Plasma By Surface Enhanced Raman Spectroscopy, Marguerite R. Butler, Terry A. Jacot, Sucharita M. Dutta, Gustavo F. Doncel, John B. Cooper

Chemistry & Biochemistry Faculty Publications

In this study, reproducible label-free detection and quantification of the antiretroviral drug emtricitabine (FTC) down to 78 ng/mL in human plasma by surface enhanced Raman spectroscopy (SERS) is presented. A novel plasma sample pretreatment method using silver nitrate and silver colloidal nanoparticles (Ag CNPs) was used to prepare the plasma samples for analysis. The pretreated plasma samples were evaporated to dryness on an aluminum surface and a computer-controlled Raman scanning system was used to collect spatially resolved SERS spectra of the entire surface. Calibration curves of commercial human plasma samples containing FTC in a concentration range of 5000 to 78 …

Structured Invariant Subspace And Decomposition Of Systems With Time Delays And Uncertainties, Huan Phan-Van, Keqin Gu

SIUE Faculty Research, Scholarship, and Creative Activity

This article discusses invariant subspaces of a matrix with a given partition structure. The existence of a nontrivial structured invariant subspace is equivalent to the possibility of decomposing the associated system with multiple feedback blocks such that the feedback operators are subject to a given constraint. The formulation is especially useful in the stability analysis of time-delay systems using the Lyapunov-Krasovskii functional approach where computational efficiency is essential in order to achieve accuracy for large scale systems. The set of all structured invariant subspaces are obtained (thus all possible decompositions are obtained as a result) for the coupled differential-difference equations …

Weak-Strong Beam-Beam Simulation With Crab Cavity Noises For The Hadron Storage Ring Of The Electron-Ion Collider, Y. Luo, B. Gamage, C. Montag, D. Marx, D. Xu, F. Willeke, H. Huang, H. Lovelace Iii, J. Berg, M. Blaskiewicz, S. Peggs, T. Satogata, V. Ptitsyn, V. Morozov, Y. Hao

Mathematics & Statistics Faculty Publications

The Electron Ion Collider (EIC), to be constructed at Brookhaven National Laboratory, will collide polarized high-energy electron beams with hadron beams, achieving luminosities of up to 1 X 10³⁴cm⁻²s⁻¹ in the center-mass energy range of 20-140 GeV. Crab cavities are employed to compensate for the geometric luminosity loss caused by a large crossing angle of 25 mrad in the interaction region. The phase noise in crab cavities will induce a significant emittance growth for the hadron beams in the Hadron Storage Ring (HSR). Various models have been utilized to study the effects of crab cavity …

A Novel Computational Analysis Of Boundary-Driven Two-Dimensional Heat Flow With Internal Heat Generation, Muhammad Abid, Madiha Bibi, Nasir Yasin, Muhammad Shahid

Mathematics & Statistics Faculty Publications

Accurate numerical solution of parabolic and elliptic partial differential equations governing two-dimensional heat transfer is critical for engineering simulations but computationally challenging. This work employs key numerical techniques finite differences, conjugate gradients, and Crank-Nicolson time stepping to solve the heat diffusion equation and analyze method performance. The Poisson equation is discretized using second-order central finite differences and solved with the conjugate gradient approach to determine the steady state solution. The transient heat equation is integrated in time via the Crank-Nicolson implicit scheme, also utilizing conjugate gradients. The methods effectively compute solutions matching analytical and boundary conditions. Convergence and stability are …

A Compact Exploration Of Turiyam Neutrosophic Competition Graphs, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Graph theory, a branch of mathematics, examines relationships between entities using vertices and edges. Within this field, Uncertain Graph Theory has emerged to model uncertainties in real-world networks. A notable concept in this area is the competition graph, which captures interactions by connecting vertices that “compete” for the same neighbor, represented by directed edges indicating common neighbors in a digraph. This brief paper introduces the concept of the Generalized Turiyam Neutrosophic Competition Graph and explores its relationships with other graph classes.

Numerical Solution Of Hybrid Nanofluid And Its Stability Over Permeable Wedge Sheet With Heat Transfer Analysis, Aisha M. Alqahtani, Zeeshan, Waris Khan, Florentin Smarandache, Nidhal Becheikh, Roobaea Alroobaea, Taseer Muhammad

Branch Mathematics and Statistics Faculty and Staff Publications

The inclusion of nanoparticles has the potential to improve the thermal efficiency of the base fluid. The field of nanofluid (NF) dynamics has attracted important attention due to its extensive range of practical uses like fuel cells, solar energy, medication administration, heat transfer, microfabrication, coolant applications, and other related domains. The aim of this study is to scrutinize the impact of Lorentz force, thermal energy, joule heating, heat source and injection parameters, and Brownian and thermoporetic diffusions on the hybrid nanofluid over the moving wedge. The stability inquiry is reported for the existing work in order to confirm the stable …

Analysis And Detection Of Cyber Attacks In Multi Vehicle Systems Using Macroscopic Models, Abhishek Kashyap

Mechanical and Aerospace Engineering Dissertations - Archive

The study of potential cyber-attacks in different domains is an active area of research. Given that systems are becoming more and more interconnected, cyber physical systems that operate infrastructure and/or plants can make these assets more vulnerable and open to different attack vectors. The primary focus of this research is the modeling, analysis and detection of cyber-attacks on platoons of autonomous cars and swarms of UAVs. In this work, we consider scenarios wherein an attacker may hack into a subset of vehicles in a multi-vehicle system and make subtle modifications in their parameters. Due to the interconnected nature of the …

A New Mechanistic Model Of Brain Metabolism With Optimal Parametrization, Alice Lubbe

Mathematics Dissertations - Archive

Models of glucose metabolism in the brain often focus on chemical exchanges and reactions that occur as part of the tricarboxylic acid cycle (TCA cycle). Experiments involving nuclear magnetic resonance (NMR) spectroscopy to detect and measure carbon-labeled isotopomers of metabolites such as glutamate in vivo inform kinetic, mechanistic models used to study metabolic pathways. In the present work, a new model with two compartments, astrocytic and neuronal, is developed using known biochemical processes and fit to experimental data coming from fully labeled glucose infusions. A gradient descent method is introduced and employed to obtain optimal flux parameter values involved in …

Uniform Regularity Estimates For The Stokes System In Perforated Domains, Jamison R. Wallace

Theses and Dissertations--Mathematics

We consider the Stokes equations in an unbounded domain $\omega_{\epsilon,\eta}$ perforated by small obstacles, where $\epsilon$ represents the minimal distance between obstacles and $\eta$ is the ratio between the obstacle size and $\epsilon$. We are able to obtain uniform $W^{1,q}$ estimates for solutions to the Stokes equations in such domains with bounding constants depending explicitly on $\epsilon$ and $\eta$.

Advancements In Elliptic Mesh Redistribution And Automated Overset Grid Generation For Computational Fluid Dynamics, Chase Ashby

Theses and Dissertations--Mathematics

Automated and robust structured curvilinear overset grid generation remains a significant challenge for the application of computational fluid dynamics. This thesis intro- duces a specialized anisotropic Mach cone aligned adaptation algorithm for low-boom simulations and an automated procedure for generating structured curvilinear overset grids for immersed boundary simulations. Results demonstrate that anisotropic mesh adaptation can reduce computational resource usage by over 50% while maintaining sonic boom prediction accuracy across the entire sonic boom domain compared to user-constructed Mach cone aligned grids. The proposed immersed overset grid gen- eration procedure eliminates the need for complex surface generation algorithms, producing grids suitable …

Pitching The Use Of Squared And Interaction Terms In Regression Via Baseball Heat Maps, Lucas Chepelsky

Williams Honors College, Honors Research Projects

This project will examine the impact of using second-order terms in regression. For illustration, we use an example of regression where a baseball player's three by three heat map, including the height and distance from inside to outside of the pitch, are variables used to predict batting average. We find that second-order terms are crucial in discovering nonlinear relationships and interaction effects in regression models, and maintain that the common practice of using first-order additive models is insufficient.

A Class Of Game-Theoretic And Fokker-Planck Optimal Control Frameworks In Colon And Esophageal Cancer, Mesfer Alajmi Phd

Mathematics Dissertations - Archive

In this dissertation, we first present a new stochastic framework for parameter estimation and uncertainty quantification in colon cancer-induced immune responses. A stochastic process that captures the system's inherent randomness determines the dynamics of colon cancer. The stochastic framework is based on the Fokker-Planck equation, which represents the evolution of the probability density function corresponding to the stochastic process. We formulate an optimization problem that takes individual patient data with randomness present and solves it to obtain the unknown parameters corresponding to the individual tumor characteristics. Furthermore, we perform a sensitivity analysis of the optimal parameter set to identify the …

Batch Culture Models Of The Murine Gut Microbiome & The Impact Of Simple Dormancy On Dormancy-Capable Microorganisms Models, Ana C. Mendez

Mathematics Dissertations - Archive

The proposed mathematical biology research utilizes mathematical models to gain insight into biological systems. These systems of ordinary differential equations model diverse topics, ranging from gut microbiomes to harmful algal blooms. A complete stability analysis, supporting phase plane portraits, bifurcation diagrams, and numerical simulations will accompany the models presented. In Chapter 2, the murine gut microbiome is modeled to match laboratory experiments in the literature. In these experiments, mice eat plasmid-carrying “donor” bacteria and naturally carry plasmid-free “resident” bacteria in their gut. The models aim to capture the behavior of plasmids, donor bacteria, and resident bacteria. Chapter 3 explores dormancy …

The Computational Search For Unidentified Central Configurations Of The Newtonian N-Body Problem, Hannah G. Havel

CURE Proceedings

The N-body problem is a field of study in mathematics and physics that involves predicting the motion of particles moving under their mutual gravitational attraction. It is vital in celestial mechanics, such as planning collision-free satellite orbit trajectories. When beginning to understand the N-body problem, we can start by looking at equal masses of these particles or celestial bodies. As particles move, their position and velocity change, both energy and angular momentum are conserved. Sets of constant energy and angular momentum, known as integral manifolds, are higher-dimensional figures that represent constraints of movement to a system. Integral manifolds are described …

Adaptive Neh With Constrained Nearest Neighbor Subtours For The Electric Vehicle Routing Problem With Time Windows, Andrew Struthers

All Master's Theses

The development of electric vehicles is currently considered one of the most innovative areas in manufacturing. Largely driven by the desire to reduce greenhouse emissions, electric vehicles are seen as a viable alternative to internal combustion engine cars. Starting from consumer cars, a dedicated effort is being made to translate this into commercial vehicles for freight and delivery. This research introduces a novel adaptive Nawaz, Enscore, Ham (NEH) algorithm with constrained nearest neighbor subtour (NEH-NN). This algorithm is tested on the standard benchmark problems in literature and used as a seed solution for the Genetic Algorithm (GA). The performance and …

Echolocation On Manifolds, Kerong Wang

Honors Theses

We consider the question asked by Wyman and Xi [WX23]: ``Can you hear your location on a manifold?” In other words, can you locate a unique point x on a manifold, up to symmetry, if you know the Laplacian eigenvalues and eigenfunctions of the manifold? In [WX23], Wyman and Xi showed that echolocation holds on one- and two-dimensional rectangles with Dirichlet boundary conditions using the pointwise Weyl counting function. They also showed echolocation holds on ellipsoids using Gaussian curvature.

In this thesis, we provide full details for Wyman and Xi's proof for one- and two-dimensional rectangles and we show that …

The Precedence-Constrained Quadratic Knapsack Problem, Changkun Guan

Honors Theses

This thesis investigates the previously unstudied Precedence-Constrained Quadratic Knapsack Problem (PC-QKP), an NP-hard nonlinear combinatorial optimization problem. The PC-QKP is a variation of the traditional Knapsack Problem (KP) that introduces several additional complexities. By developing custom exact and approximate solution methods, and testing these on a wide range of carefully structured PC-QKP problem instances, we seek to identify and understand patterns that make some cases easier or harder to solve than others. The findings aim to help develop better strategies for solving this and similar problems in the future.

Combined Plithogenic Hypersoft Sets In Decision Making On Supplier Selection With Different Mcdm Approaches., Sikkanan Sudha, Ravi Priya, Nivetha Martin, Said Broumi, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Decision making methods integrated with Plithogenic sets are highly feasible and resilient in designing optimal solutions. This research work identifies the research gaps of limited applications of combined plithogenic hypersoft sets (CPHSS) and hence proposes a supplier selection decision problem with an integrated approach combining CPHSS with MCDM methods. A generalized form of Plithogenic accuracy function is used in determining the plithogenic accuracy matrix to which the prominent ranking methods of TOPSIS, ELECTRE, VIKOR and MAIRCA are applied. The proposed hybrid decision approach is illustrated using supplier selection decision problem as a case study. The ranking results are compared with …

Associated A Nexus With A Treesoft Sets And Vice Versa, Akbar Rezae, Karim Ghadimi, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

We recall the definitions of a nexus and a TreeSoft Set, and investigate the relation between them. We associated a nexus with a TreeSoft Set induced by a tree graph and vice versa.

Investigation Of Space Charge Effects On Co2 Electrocatalytic Reduction On Gd-Doped Ceria Via Scanning Kelvin Probe And Model-Based Bayesian Analysis, Alejandro Mejia

Graduate Theses, Dissertations, and Problem Reports (ETD)

In studying novel energy conversion and storage systems, such as high-temperature electrolysis, numerous underlying fundamental physical processes remain unclear or inadequately understood. Among these, the modeling and comprehension of surface reaction mechanisms, coupled with the intricate effects of space‑charge interfaces, remains an unclear and challenging area of research.

The work of this dissertation involves the development of a 2D finite element analysis model, leveraging the robust MOOSE framework from INL. This model, featuring inhomogeneous defect thermodynamics for near-surface chemistry, formulated through Poisson‑Cahn variational theory, has been exploited for studying the electrocatalytic reduction of CO₂ on gadolinia doped ceria. The …

Robot-Based 3d Printing, Aaron Hoffman

Williams Honors College, Honors Research Projects

Details of a large-format 3D printer created to print experimental materials, test multi-axis print techniques, and quickly print large objects. The printer consists of a 7-axis robotic arm and pellet extruder, which are controlled by a PC. Experimental materials such as recycled polymers or carbon-fiber reinforced materials can be easily tested with the pellet format of the extruder. The printer can perform different printing techniques and can be used to experiment with material properties when using these techniques with different polymers. The print surface is around 5 times larger than the average commercial 3D printer, and the robotic arm provides …

Estimating Modeling Parameters For Covid-19 Spread On Campus, Aviel S. Crigger

Honors Undergraduate Theses

Understanding the true burden of community transmission of communicable diseases like COVID-19 is crucial for effective public health response. Clinical cases, while important, only represent a fraction of the actual disease prevalence within a population. In this thesis, we investigate methods to estimate parameters that link clinical cases to the true disease prevalence using a modified compartmental model known as SICR (Susceptible, Infected, Cases, Recovered). We employ Bayesian inference and ensemble Markov chain Monte Carlo (MCMC) simulations to analyze clinical case data provided by the University of Central Florida Health Center from 2020 to 2022. Our goal is to estimate …

Uniform Convergence Of Deep Neural Networks With Lipschitz Continuous Activation Functions And Variable Widths, Yuesheng Xu, Haizhang Zhang

Mathematics & Statistics Faculty Publications

We consider deep neural networks (DNNs) with a Lipschitz continuous activation function and with weight matrices of variable widths. We establish a uniform convergence analysis framework in which sufficient conditions on weight matrices and bias vectors together with the Lipschitz constant are provided to ensure uniform convergence of DNNs to a meaningful function as the number of their layers tends to infinity. In the framework, special results on uniform convergence of DNNs with a fixed width, bounded widths and unbounded widths are presented. In particular, as convolutional neural networks are special DNNs with weight matrices of increasing widths, we put …

Symmetry Analysis Of The Canonical Connection On Lie Groups:Co-Dimension Two Abelian Nilradical With Abelian And Non Abelian Complement, Nouf Alrubea Almutiben

Theses and Dissertations

We consider the symmetry algebra of the geodesic equations of the canonical
connection on a Lie groups. We mainly consider the solvable indecomposable four,
five and six-dimensional Lie algebras with co-dimension two abelian nilradical, that
have an abelian and not abelian complement. In this particular case, we have only
one algebra in dimension four namely; A4,12 , and three algebras in dimension five
namely; A5,33, A5,34, and A5,35 In dimension six, based on the list of Lie algebras in
Turkowski’s list, there are nineteen such algebras namely; A6,1- A6,19 that have an
abelian complement, and there are eight algebras that …

New Method For Computing The Euclidean Condition Number With Rim-C, Cody Mccarthy

Dissertations, Master's Theses and Master's Reports

The condition number, being critical to solving linear systems, has many impor-
tant applications. Specifically for robust control analysis, the Euclidean norm has
widespread use over the 1-norm and ∞-norm such as determining a control system’s
stability to uncertainty [1]. Much work has been done with estimating the Euclidean
condition number, but current algorithms for computing said condition number, with
large matrices, tend to run slow as well as requiring a large amount of computa-
tional resources. This report seeks to provide a more time efficient algorithm that
utilizes MATLAB’s eigs, svds, and normest commands as well as the recently …