Applied Mathematics Commons^™

Six Septembers: Mathematics For The Humanist, Patrick Juola, Stephen Ramsay

Zea E-Books Collection

Scholars of all stripes are turning their attention to materials that represent enormous opportunities for the future of humanistic inquiry. The purpose of this book is to impart the concepts that underlie the mathematics they are likely to encounter and to unfold the notation in a way that removes that particular barrier completely. This book is a primer for developing the skills to enable humanist scholars to address complicated technical material with confidence. This book, to put it plainly, is concerned with the things that the author of a technical article knows, but isn’t saying. Like any field, mathematics operates …

A Framework For Predicting Impacts On Ecosystem Services From (Sub)Organismal Responses To Chemicals, Valery E. Forbes, Chris J. Salice, Bjorn Birnir, Randy J.F. Bruins, Peter Calow, Virginie Ducrot, Nika Galic, Kristina Garber, Bret C. Harvey, Henriette Jager, Andrew Kanarek, Robert Pastorok, Steve F. Railsback, Richard Rebarber, Pernille Thorbek

Department of Mathematics: Faculty Publications

Protection of ecosystem services is increasingly emphasized as a risk-assessment goal, but there are wide gaps between current ecological risk-assessment endpoints and potential effects on services provided by ecosystems. The authors present a framework that links common ecotoxicological endpoints to chemical impacts on populations and communities and the ecosystem services that they provide. This framework builds on considerable advances in mechanistic effects models designed to span multiple levels of biological organization and account for various types of biological interactions and feedbacks. For illustration, the authors introduce 2 case studies that employ well-developed and validated mechanistic effects models: the inSTREAM individual-based …

Sine, Cosine, And Tangent Table: 0 To 360 Degrees, Paul Royster

Department of Mathematics: Class Notes and Learning Materials

In helping with my high school student's math homework, I was astonished to find no trig tables in the 800-page textbook. I was further astonished to find no printable version online that extended beyond 90°.

While most smartphones will tell you the sine of an angle, they will not necessarily tell you the angle for which the sine is x. And since multiple angles may have the same sine (e.g. 59° and 121°), it seems useful to see the numerical progression of the functions in addition to their graphical representation.

Here is a printable sine-cosine-tangent table for all integer angle …

Gene Expression Noise Enhances Robust Organization Of The Early Mammalian Blastocyst, William R. Holmes, Nabora Soledad Reyes De Mochel, Qixuan Wang, Huijing Du, Tao Peng, Michael Chiang, Olivier Cinquin, Ken Cho, Qing Nie

Department of Mathematics: Faculty Publications

A critical event in mammalian embryo development is construction of an inner cell mass surrounded by a trophoectoderm (a shell of cells that later form extraembryonic structures). We utilize multi-scale, stochastic modeling to investigate the design principles responsible for robust establishment of these structures. This investigation makes three predictions, each supported by our quantitative imaging. First, stochasticity in the expression of critical genes promotes cell plasticity and has a critical role in accurately organizing the developing mouse blastocyst. Second, asymmetry in the levels of noise variation (expression fluctuation) of Cdx2 and Oct4 provides a means to gain the benefits of …

End-To-End Molecular Communication Channels In Cell Metabolism: An Information Theoretic Study, Zahmeeth Sayed Sakkaff, Jennie L. Catlett, Mikaela Cashman, Massimiliano Pierobon, Nicole R. Buan, Myra B. Cohen, Christine A. Kelley

Department of Biochemistry: Faculty Publications

The opportunity to control and fine-tune the behavior of biological cells is a fascinating possibility for many diverse disciplines, ranging from medicine and ecology, to chemical industry and space exploration. While synthetic biology is providing novel tools to reprogram cell behavior from their genetic code, many challenges need to be solved before it can become a true engineering discipline, such as reliability, safety assurance, reproducibility and stability. This paper aims to understand the limits in the controllability of the behavior of a natural (non-engineered) biological cell. In particular, the focus is on cell metabolism, and its natural regulation mechanisms, and …

Joint Hierarchical Models For Sparsely Sampled High-Dimensional Lidar And Forest Variables, Andrew O. Finley, Sudipto Banerjee, Yuzhen Zhou, Bruce D. Cook, Chad Babcock

United States National Aeronautics and Space Administration: Publications

Recent advancements in remote sensing technology, specifically Light Detection and Ranging (LiDAR) sensors, provide the data needed to quantify forest characteristics at a fine spatial resolution over large geographic domains. From an inferential standpoint, there is interest in prediction and interpolation of the often sparsely sampled and spatially misaligned LiDAR signals and forest variables. We propose a fully process-based Bayesian hierarchical model for above ground biomass (AGB) and LiDAR signals. The processbased framework offers richness in inferential capabilities, e.g., inference on the entire underlying processes instead of estimates only at pre-specified points. Key challenges we obviate include misalignment between the …

An Early Semester Mastery Activity And Intervention In First-Year Calculus, Allan P. Donsig, Nathan Wakefield

Department of Mathematics: Faculty Publications

Success in first-year mathematics courses is essential for students to pursue STEM careers, including teaching careers. We investigate a mastery activity given during the first two weeks of a first-year calculus course at the research site. Previous work showed a model using this activity in College Algebra, together with ACT and high school rank, was predictive of student success in precalculus. Here we do a similar analysis for such an activity in calculus, including an intervention for students who do not complete the activity. We also investigate the intervention’s effectiveness. These results show that the early mastery activity, especially when …

Structure For Regular Inclusions. I, David R. Pitts

Department of Mathematics: Faculty Publications

We give general structure theory for pairs (C,D) of unital C*- algebras where D is a regular and abelian C*-subalgebra of C.

When D is maximal abelian in C, we prove existence and uniqueness of a completely positive unital map E of C into the injective envelope I(D) of D such that EjD = idD; E is a useful replacement for a conditional expectation when no expectation exists. When E is faithful, (C,D) has numerous desirable properties: e.g. the linear span of the normalizers has a unique minimal C*- norm; D norms C; and isometric isomorphisms of norm-closed subalgebras lying …

Oscillation Of Solution To Second-Order Half-Linear Delay Dynamic Equations On Time Scales, Hongwu Wu, Lynn Erbe, Allan Peterson

Department of Mathematics: Faculty Publications

This article concerns the oscillation of solutions to second-order half-linear dynamic equations with a variable delay. By using integral averaging techniques and generalized Riccati transformations, new oscillation criteria are obtained. Our results extend Kamenev-type, Philos-type and Li-type oscillation criteria. Several examples are given to illustrate our results.

Matched Metrics And Channels, Marcelo Firer, Judy L. Walker

Department of Mathematics: Faculty Publications

The most common decision criteria for decoding are maximum likelihood decoding and nearest neighbor decoding. It is well-known that maximum likelihood decoding coincides with nearest neighbor decoding with respect to the Hamming metric on the binary symmetric channel. In this work we study channels and metrics for which those two criteria do and do not coincide for general codes.

Converting Heterogeneous Statistical Tables On The Web To Searchable Databases, David W. Embley, Mukkai S. Krishnamoorthy, George Nagy, Sharad C. Seth

School of Computing: Faculty Publications

Much of the world’s quantitative data reside in scattered web tables. For a meaningful role in Big Data analytics, the facts reported in these tables must be brought into a uniform framework. Based on a formalization of header-indexed tables, we proffer an algorithmic solution to end-to-end table processing for a large class of human-readable tables. The proposed algorithms transform header-indexed tables to a category table format that maps easily to a variety of industry-standard data stores for query processing. The algorithms segment table regions based on the unique indexing of the data region by header paths, classify table cells, and …

Image Harvest: An Open-Source Platform For High-Throughput Plant Image Processing And Analysis, Avi C. Knecht, Malachy T. Campbell, Adam Caprez, David R. Swanson, Harkamal Walia

Holland Computing Center: Faculty Publications

High-throughput plant phenotyping is an effective approach to bridge the genotype-to-phenotype gap in crops. Phenomics experiments typically result in large-scale image datasets, which are not amenable for processing on desktop computers, thus creating a bottleneck in the image-analysis pipeline. Here, we present an open-source, flexible image-analysis framework, called Image Harvest (IH), for processing images originating from high-throughput plant phenotyping platforms. Image Harvest is developed to perform parallel processing on computing grids and provides an integrated feature for metadata extraction from large-scale file organization. Moreover, the integration of IH with the Open Science Grid provides academic researchers with the computational resources …

Comparing The Growth Of The Prime Numbers To The Natural Numbers, Michael A. Brilleslyper, Nathan Wakefield, A. J. Wallerstein, Bradley Warner

Department of Mathematics: Faculty Publications

We define a new method of measuring the rate of divergence for an increasing positive sequence of integers. We introduce the growth function for such a sequence and its associated growth limit. We use these tools to study the divergence rate for the natural numbers, polynomial and exponential-type sequences, and the prime numbers. We conclude with a number of open questions concerning general properties and characterizations of growth functions and the set of possible growth limits.

Characterizing Mathematics Graduate Student Teaching Assistants’ Opportunities To Learn From Teaching, Yvonne Lai, Wendy Smith, Nathan Wakefield, Erica R. Miller, Julia St. Goar, Corbin M. Groothuis, Kelsey M. Wells

Department of Mathematics: Faculty Publications

Exemplary models to inform novice instruction and the development of graduate teaching assistants (TAs) exist. What is missing from the literature is the process of how graduate students in model professional development programs make sense of and enact the experiences offered. A first step to understanding TAs’ learning to teach is to characterize how and whether they link observations of student work to hypotheses about student thinking and then connect those hypotheses to future teaching actions. A reason to be interested in these connections is that their strength and coherence determine how well TAs can learn from experiences. We found …

R0 Analysis Of A Benthic-Drift Model For A Stream Population, Qihua Huang, Yu Jin, Mark A. Lewis

Department of Mathematics: Faculty Publications

One key issue for theory in stream ecology is how much stream flow can be changed while still maintaining an intact stream ecology, instream flow needs (IFNs); the study of determining IFNs is challenging due to the complex and dynamic nature of the interaction between the stream environ- ment and the biological community. We develop a process-oriented benthic-drift model that links changes in the flow regime and habitat availability with population dynamics. In the model, the stream is divided into two zones, drift zone and benthic zone, and the population is divided into two interacting compartments, individuals residing in the …

Simple Adaptive Control For Positive Linear Systems With Applications To Pest Management, Chris Guiver, Christina Edholm, Yu Jin, Markus Mueller, Jim Powell, Richard Rebarber, Brigitte Tenhumberg, Stuart Townley

Department of Mathematics: Faculty Publications

Pest management is vitally important for modern arable farming, but models for pest species are often highly uncertain. In the context of pest management, control actions are naturally described by a nonlinear feedback that is generally unknown, which thus motivates a robust control approach. We argue that adaptive approaches are well suited for the management of pests and propose a simple high-gain adaptive tuning mechanism so that the nonlinear feedback achieves exponential stabilization. Furthermore, a switched adaptive controller is proposed, cycling through a set of given control actions, that also achieves global asymptotic stability. Such a model in practice allows …

Unique Pseudo-Expectations For C∗-Inclusions, David R. Pitts, Vrej Zarikian

Department of Mathematics: Faculty Publications

Given an inclusion D⊆C of unital C ∗ -algebras (with common unit), a unital completely positive linear map Φ of C into the injective envelope I(D) of D which extends the inclusion of D into I(D) is a pseudo-expectation. Pseudo-expectations are generalizations of conditional expectations, but with the advantage that they always exist. The set PsExp(C,D) of all pseudo-expectations is a convex set, and when D is Abelian, we prove a Krein–Milman type theorem showing that PsExp(C,D) can be recovered from its set of extreme points. In general, PsExp(C,D) is not a singleton. However, there are large and natural classes …

Comparison Theorems And Asymptotic Behavior Of Solutions Of Discrete Fractional Equations, Baoguo Jia, Lynn Erbe, Allan Peterson

Department of Mathematics: Faculty Publications

Consider the following n-th order nabla and delta fractional difference equations

rn r (a)x(t) = c(t)x(t), t 2 Na+1, x(a) > 0.

and

Va+v-1x(t) = c(t)x(t + v - 1), t 2 Na, x(a + n - 1) > 0

We establish comparison theorems by which we compare the solutions x(t) of (*) and (**) with the solutions of the equations rn r(a)x(t) = bx(t) and Dn a+v-1x(t) = bx(t + v -1), respectively, where b is a constant. We obtain four asymptotic results, one of them extends the recent result [F. M. Atici, P. W. Eloe, Rocky Mountain J. Math. 41(2011), …

Analysis Of Neuronal Sequences Using Pairwise Biases, Zachary Roth

Department of Mathematics: Dissertations, Theses, and Student Research

Sequences of neuronal activation have long been implicated in a variety of brain functions. In particular, these sequences have been tied to memory formation and spatial navigation in the hippocampus, a region of mammalian brains. Traditionally, neuronal sequences have been interpreted as noisy manifestations of neuronal templates (i.e., orderings), ignoring much richer structure contained in the sequences. This paper introduces a new tool for understanding neuronal sequences: the bias matrix. The bias matrix captures the probabilistic tendency of each neuron to fire before or after each other neuron. Despite considering only pairs of neurons, the bias matrix captures the best …

Local And Nonlocal Models In Thin-Plate And Bridge Dynamics, Jeremy Trageser

Department of Mathematics: Dissertations, Theses, and Student Research

This thesis explores several models in continuum mechanics from both local and nonlocal perspectives. The first portion settles a conjecture proposed by Filippo Gazzola and his collaborators on the finite-time blow-up for a class of fourth-order differential equations modeling suspension bridges. Under suitable assumptions on the nonlinearity and the initial data, a finite-time blowup is demonstrated as a result of rapid oscillations with geometrically growing amplitudes. The second section introduces a nonlocal peridynamic (integral) generalization of the biharmonic operator. Its action converges to that of the classical biharmonic as the radius of nonlocal interactions---the ``horizon"---tends to zero. For the corresponding …

Some Relations Between The Caputo Fractional Difference Operators And Integer-Order Differences, Baoguo Jia, Lynn Erbe, Allan Peterson

Department of Mathematics: Faculty Publications

In this article, we are concerned with the relationships between the sign of Caputo fractional differences and integer nabla differences. In particular, we show that if N -1 < v < N. f : Na -N + 1 -> R, va * f(t) > O, for t - Na +1 and N-1f(a) > 0, then N -1 f(t) > 0 for t- Na +1, then va* f(t) > 0, for each t - Na +1. As applications of these two results, we get that if 1 < vR, va*f(t) > 0 for t - Na +1 and f(a) > f(a-1), then f(t) is an increasing function for t- Na -1. Conversely if 0 < vR and f is an increasing function for t - Na, then va*f(t) > 0, for each t - Na +1. …

Multiphysics Modeling To Enhance Understanding Of Microwave Heating Of Food In Domestic Ovens, Jiajia Chen

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Nonuniform heating is the biggest issue in the microwave heating of prepared meals. Multiphysics based models are promising tools to improve microwave heating uniformity by properly designing the food product. However, limited availability of accurate temperature-dependent material properties, inadequate model prediction accuracy, and high computational power and complexity in model development are three gaps that greatly limited the application of these models in the food industry.

To fill in the gaps, firstly, we developed a multitemperature calibration protocol to measure temperature-dependent dielectric properties (dielectric constant and loss factor). The temperature-dependent dielectric and thermal (thermal conductivity and specific heat capacity) properties …

Bioinformatic Game Theory And Its Application To Cluster Multi-Domain Proteins, Brittney Keel

Department of Mathematics: Dissertations, Theses, and Student Research

The exact evolutionary history of any set of biological sequences is unknown, and all phylogenetic reconstructions are approximations. The problem becomes harder when one must consider a mix of vertical and lateral phylogenetic signals. In this dissertation we propose a game-theoretic approach to clustering biological sequences and analyzing their evolutionary histories. In this context we use the term evolution as a broad descriptor for the entire set of mechanisms driving the inherited characteristics of a population. The key assumption in our development is that evolution tries to accommodate the competing forces of selection, of which the conservation force seeks to …

Best Practice Recommendations For Data Screening, Justin A. Desimone, Peter D. Harms, Alice J. Desimone

Department of Management: Faculty Publications

Survey respondents differ in their levels of attention and effort when responding to items. There are a number of methods researchers may use to identify respondents who fail to exert sufficient effort in order to increase the rigor of analysis and enhance the trustworthiness of study results. Screening techniques are organized into three general categories, which differ in impact on survey design and potential respondent awareness. Assumptions and considerations regarding appropriate use of screening techniques are discussed along with descriptions of each technique. The utility of each screening technique is a function of survey design and administration. Each technique has …

Spin Glass Reflection Of The Decoding Transition For Quantum Error Correcting Codes, Alexey Kovalev, Leonid P. Pryadko

Department of Physics and Astronomy: Faculty Publications

We study the decoding transition for quantum error correcting codes with the help of a mapping to random-bond Wegner spin models. Families of quantum low density parity-check (LDPC) codes with a finite decoding threshold lead to both known models (e.g., random bond Ising and random plaquette Z₂ gauge models) as well as unexplored earlier generally non-local disordered spin models with non-trivial phase diagrams. The decoding transition corresponds to a transition from the ordered phase by proliferation of "post-topological" extended defects which generalize the notion of domain walls to non-local spin models. In recently discovered quantum LDPC code families with …

Clique Topology Reveals Intrinsic Geometric Structure In Neural Correlations, Chad Giusti, Eva Pastalkova, Carina Curto, Vladimir Itskov

Department of Mathematics: Faculty Publications

Detecting meaningful structure in neural activity and connectivity data is challenging in the presence of hidden nonlinearities, where traditional eigenvalue-based methods may be misleading. We introduce a novel approach to matrix analysis, called clique topology, that extracts features of the data invariant under nonlinear monotone transformations. These features can be used to detect both random and geometric structure, and depend only on the relative ordering of matrix entries. We then analyzed the activity of pyramidal neurons in rat hippocampus, recorded while the animal was exploring a 2D environment, and confirmed that our method is able to detect geometric organization using …

The Interplay Between Wnt Mediated Expansion And Negative Regulation Of Growth Promotes Robust Intestinal Crypt Structure And Homeostasis, Huijing Du, Qing Nie, William R. Holmes

Department of Mathematics: Faculty Publications

The epithelium of the small intestinal crypt, which has a vital role in protecting the underlying tissue from the harsh intestinal environment, is completely renewed every 4–5 days by a small pool of stem cells at the base of each crypt. How is this renewal controlled and homeostasis maintained, particularly given the rapid nature of this process? Here, based on the recent observations from in vitro “mini gut” studies, we use a hybrid stochastic model of the crypt to investigate how exogenous niche signaling (from Wnt and BMP) combines with auto-regulation to promote homeostasis. This model builds on the sub-cellular …

Toric Varieties, Monoid Schemes And Cdh Descent, Guillermo Cortiñas, C. Haesemeyer, Mark E. Walker, Charles Weibel

Department of Mathematics: Faculty Publications

We give conditions for the Mayer–Vietoris property to hold for the algebraic K-theory of blow-up squares of toric varieties and schemes, using the theory of monoid schemes. These conditions are used to relate algebraic K-theory to topological cyclic homology in characteristic p. To achieve our goals, we develop many notions for monoid schemes based on classical algebraic geometry, such as separated and proper maps and resolution of singularities.

Integrating Path-Dependent Functionals On Yeh-Wiener Space, Ian Pierce, David Skough

Department of Mathematics: Faculty Publications

Denote by Ca,b(Q) the generalized two-parameter Yeh-Wiener space with associated Gaussian measure. We investigate several scenarios in which integrals of functionals on this space can be reduced to integrals of related functionals over an appropriate single-parameter generalized Wiener space Cˆa,ˆb[0, T ]. This extends some interesting results of R. H. Cameron and D. A. Storvick.

Enumeration Of Tilings Of Quartered Aztec Rectangles, Tri Lai

Department of Mathematics: Faculty Publications

We generalize a theorem of W. Jockusch and J. Propp on quartered Aztec diamonds by enumerating the tilings of quartered Aztec rectangles. We use subgraph replacement method to transform the dual graph of a quartered Aztec rectangle to the dual graph of a quartered lozenge hexagon, and then use Lindstr¨om-Gessel- Viennot methodology to find the number of tilings of a quartered lozenge hexagon.