Physical Sciences and Mathematics Commons^™

Data Generated During The 2018 Lapse-Rate Campaign: An Introduction And Overview, Gijs De Boer, Adam Houston, Jamey D. Jacob, Phillip B. Chilson, Suzanne W. Smith, Brian Argrow, Dale Lawrence, Jack Elston, David Brus, Osku Kemppinen, Petra Klein, Julie K. Lundquist, Sean Waugh, Sean C. C. Bailey, Amy E. Frazier, Michael P. Sama, Christopher Crick, David G. Schmale Iii, James Pinto, Elizabeth A. Pillar-Little, Victoria Natalie, Anders Jensen

Mechanical Engineering Faculty Publications

Unmanned aircraft systems (UASs) offer innovative capabilities for providing new perspectives on the atmosphere, and therefore atmospheric scientists are rapidly expanding their use, particularly for studying the planetary boundary layer. In support of this expansion, from 14 to 20 July 2018 the International Society for Atmospheric Research using Remotely piloted Aircraft (ISARRA) hosted a community flight week, dubbed the Lower Atmospheric Profiling Studies at Elevation – a Remotely-piloted Aircraft Team Experiment (LAPSE-RATE; de Boer et al., 2020a). This field campaign spanned a 1-week deployment to Colorado's San Luis Valley, involving over 100 students, scientists, engineers, pilots, and outreach coordinators. These …

Expres. Ii. Searching For Planets Around Active Stars: A Case Study Of Hd 101501, Samuel H. C. Cabot, Rachael M. Roettenbacher, Gregory W. Henry, Lily Zhao, Robert O. Harmon, Debra A. Fischer, John M. Brewer, Joe Llama, Ryan R. Petersburg, Andrew E. Szymkowiak

Information Systems and Engineering Management Research Publications

By controlling instrumental errors to below 10 cm s−1, the EXtreme PREcision Spectrograph (EXPRES) allows for a more insightful study of photospheric velocities that can mask weak Keplerian signals. Gaussian processes (GP) have become a standard tool for modeling correlated noise in radial velocity data sets. While GPs are constrained and motivated by physical properties of the star, in some cases they are still flexible enough to absorb unresolved Keplerian signals. We apply GP regression to EXPRES radial velocity measurements of the 3.5 Gyr old chromospherically active Sun-like star, HD 101501. We obtain tight constraints on the stellar rotation period …

The Bay Area Rail System: A Sustainable Network Or A Social Equity Phenomenon?, Whitney Libunao

Master's Projects and Capstones

Sustainable transportation, as it relates to sustainable development, aims to achieve economic stability, social equity, and environmental preservation via transit projects. However, gentrification processes and transit-oriented developments or TODs have attracted more households inward toward reinvested transit-centric areas. The San Francisco Bay Area, California has continued to see positive economic growth, with that, higher-income households inhabiting more centralized locations. Native low-income residents have started to feel displacement pressures on both a social and economic scale. Over time, displacement risk inevitably leads to residential displacement where low-income families are forced to relocate to distant, more affordable neighborhoods. As more distance separates …

In Silico Apc/C Substrate Discovery Reveals Cell Cycle-Dependent Degradation Of Uhrf1 And Other Chromatin Regulators, Jennifer L. Franks, Raquel C. Martinez-Chacin, Xianxi Wang, Rochelle L. Tiedemann, Thomas Bonacci, Rajarshi Choudhury, Derek L. Bolhuis, Taylor P. Enrico, Ryan D. Mouery, Jeffrey S. Damrauer, Feng Yan, Joseph S. Harrison, M. Ben Major, Katherine A. Hoadley, Aussie Suzuki, Scott B. Rothbart, Nicholas G. Brown, Michael J. Emanuele

College of the Pacific Faculty Articles

The anaphase-promoting complex/cyclosome (APC/C) is an E3 ubiquitin ligase and critical regulator of cell cycle progression. Despite its vital role, it has remained challenging to globally map APC/C substrates. By combining orthogonal features of known substrates, we predicted APC/C substrates in silico. This analysis identified many known substrates and suggested numerous candidates. Unexpectedly, chromatin regulatory proteins are enriched among putative substrates, and we show experimentally that several chromatin proteins bind APC/C, oscillate during the cell cycle, and are degraded following APC/C activation, consistent with being direct APC/C substrates. Additional analysis revealed detailed mechanisms of ubiquitylation for UHRF1, a key chromatin …

Synthesis Of The Oxidative Metabolites Of Di(2-Ethylhexyl) Phthalate And Analysis Of Metabolite Binding With Peroxisome Proliferator-Activated Receptors, Alexis Brooner

Departmental Honors & Graduate Capstone Projects

Di(2-ethylhexyl) phthalate (DEHP) is a persistent organic pollutant that is added to increase the flexibility of soft plastics, such as polyvinyl chloride (PVC). Since DEHP is not bound to the polymer, it leaches into the environment, leading to human exposure. When DEHP is metabolized by the body, it is cleaved into mono-(2-ethylhexyl) phthalate (MEHP). MEHP is then oxidized to produce the secondary-oxidized metabolites mono-(2-ethyl-5-carboxypentyl)phthalate (5cx-MEPP), mono-(2-ethyl-5-oxohexyl)phthalate (5oxo-MEHP), and mono-[2-(carboxymethyl)hexyl]phthalate (2cx-MMHP). DEHP and its metabolites interact with peroxisome proliferator-activated receptors (PPARs), which can alter lipid metabolism. To synthesize 5cx-MEHP, an enolate alkylation was performed with ethyl butyrate to form ethyl 2-ethyl-6-heptenoate. …

Large Global Variations In Measured Airborne Metal Concentrations Driven By Anthropogenic Sources, Jacob Mcneill, Randal V. Martin, Nofel Lagrosas, 35 Co-Authors

SOSE Affiliate: Manila Observatory

Globally consistent measurements of airborne metal concentrations in fine particulate matter (PM_2.5) are important for understanding potential health impacts, prioritizing air pollution mitigation strategies, and enabling global chemical transport model development. PM_2.5 filter samples (N ~ 800 from 19 locations) collected from a globally distributed surface particulate matter sampling network (SPARTAN) between January 2013 and April 2019 were analyzed for particulate mass and trace metals content. Metal concentrations exhibited pronounced spatial variation, primarily driven by anthropogenic activities. PM_2.5 levels of lead, arsenic, chromium, and zinc were significantly enriched at some locations by factors of 100–3000 compared …

Market Viability Of An Avoided Wildfire Ghg Emission Accounting Framework For California, Justine Bui

Master's Projects and Capstones

Forests in California and elsewhere are under an increasing threat of uncharacteristically large and severe wildfires. Fuel treatments, such as tree density reduction or prescribed burns, can alter wildfire behavior and potentially reduce risk. An environmental consulting group is currently developing a probability-based greenhouse gas (GHG) emissions accounting framework that would provide tools to quantify GHG benefits of fuel treatments and help fund said treatments through carbon offset credits. This framework is being developed in collaboration with key stakeholders (such as public agencies, carbon offset registries, non-profit organizations, and the private sector) in the western United States. A market assessment …

Precision Measurement Of The Ratio Β(Y(3S) → Τ + Τ−) / Β( Y(3S)→ Μ+ Μ−, J. P. Lees, V. Poireau, V. Tisserand, E. Grauges, A. Palano, G. Eigen, D. N. Brown, Yu. G. Kolomensky, M. Fritsch, H. Koch, T. Schroeder, R. Cheaib, C. Hearty, T. S. Mattison, J. A. Mckenna, R. Y. So, V. E. Blinov, A. R. Buzykaev, V. P. Druzhinin, Milind Purohit, Et. Al.

Faculty Publications

We report on a precision measurement of the ratio Rϒð3SÞ τμ ¼ Bðϒð3SÞ → τþτ−Þ=Bðϒð3SÞ → μþμ−Þ using data collected with the BABAR detector at the SLAC PEP-II eþe− collider. The measurement is based on a 28 fb−1 data sample collected at a center-of-mass energy of 10.355 GeV corresponding to a sample of 122 million ϒð3SÞ mesons. The ratio is measured to be Rϒð3SÞ τμ ¼ 0.966 0.008stat 0.014syst and is in agreement with the standard model prediction of 0.9948 within 2 standard deviations. The uncertainty in Rϒð3SÞ τμ is almost an order of magnitude smaller than the only previous …

Nature And Origin Of The East Traverse Mountains Mega-Landslide, Northern Utah (Usa), Rodney Ryan Chadburn

Theses and Dissertations

The East Traverse Mountains are an E-W trending mountain range dividing Utah and Salt Lake valleys in northern Utah. Geologically perplexing, the nature of the East Traverse Mountains has been under investigation for 140 years. Previously, the mountain range was proposed to be a dismembered but still coherent down-faulted block that experienced 4 km of post-thrusting extension within the Charleston-Nebo thrust sheet. However, new insight on the origin of the East Traverse Mountains indicate that it is a mega landslide, roughly ~100 km3 in size, which catastrophically slid from the upper reaches of the Little-Cottonwood stock to its present-day location. …

Applying Web Technologies For Data Mining Of Models Of Advancement Over Time In Space Exploration Technology, Peng-Hung Tsai

Theses and Dissertations

The development of web technologies has progressed rapidly in the past few decades. As a result, these technologies have increasingly gained popularity among researchers as an instrument for data analysis and visualization to aid their work. The purpose of this project is to pursue a new method for mining time-based data to perform curve fitting, using web client technology. This requires comparing the advantages and disadvantages of different JavaScript software designs to determine which is best. Based on the results, we emphasize developing a client-side web application and demonstrate its use through fitting a curve for a new metric to …

Tree Canopy Effects On Roof-Harvested Rainwater In East Texas, Kimberly Gamez

Electronic Theses and Dissertations

Nine experimental metal roofs with rainwater harvesting systems were constructed and water quality parameters were measured in 2016-2017 in order to evaluate the effects of arboreal overhang on roof-harvested rainwater quality collected in East Texas. Three treatments were evaluated: Rainwater collected from roofs without any overhanging tree vegetation, rainwater collected from roofs under predominantly Southern yellow pine tree cover, and rainwater collected from roofs under predominantly hardwood tree cover. Rainwater was collected from these roofs for one year. The effects of canopy cover on water quality parameters, comparison to drinking water standards, first-flush efficiency, and seasonal effects were evaluated.

Significant …

Challenges Of Electrifying Medium And Heavy Duty Vehicles In California And How These Challenges Can Be Overcome, Tracy Tilley

Master's Projects and Capstones

California is electrifying medium and heavy vehicles (vehicles weighing over 8,500 pounds) to reduce greenhouse gas emissions and provide environmental justice for disadvantaged communities. These vehicles are used for delivery, construction, refuse collection or long haul trucking. The three main challenges of electrification are infrastructure, policy and funding. To address these challenges, policy analysis was used to review California’s policies already in place for electrification of medium and heavy duty vehicles. Comparative analysis was used to look at policies in other countries and environmental programs for strategies to help electrification efforts.

California faces a lack of infrastructure of medium and …

How Live Streaming And Twitch Have Changed The Gaming Industry, Krystal Ruiz

ART 108: Introduction to Games Studies

Live streaming in itself has become a booming industry in which its content consists of “streamers” who live broadcast numerous events and real-time interactions while simultaneously chatting with viewers drawing huge and increasing numbers (Adamovich). Twitch has especially excelled at garnering attention as one of the most popular live streaming platforms that focuses on broadcasting and viewing video game content (Adamovich). Twitch has grown rapidly within the last few years asserting its dominance as one of the major forces in the games industry and becoming a multi-billion-dollar industry (Adamovich). For example, according to Descrier, in 2016 there were approximately 292 …

Seasonal Variation Of Vertical Heat And Energy Fluxes Due To Dissipating Gravity Waves In The Mesopause Region Over The Andes, Yafang Guo, Alan Z. Liu

Publications

Vertical energy transports due to dissipating gravity waves in the mesopause region (85–100 km) are analyzed using over 400 h of observational data obtained from a narrow-band sodium wind-temperature lidar located at Andes Lidar Observatory (ALO), Cerro Pachón (30.25°S, 70.73°W), Chile. Sensible heat flux is directly estimated using measured temperature and vertical wind; energy flux is estimated from the vertical wavenumber and frequency spectra of temperature perturbations; and enthalpy flux is derived based on its relationship with sensible heat and energy fluxes. Sensible heat flux is mostly downward throughout the region. Enthalpy flux exhibits an annual oscillation with maximum downward …

Thaw Publications, Carl Landwehr, David Kotz

Computer Science Technical Reports

In 2013, the National Science Foundation's Secure and Trustworthy Cyberspace program awarded a Frontier grant to a consortium of four institutions, led by Dartmouth College, to enable trustworthy cybersystems for health and wellness. As of this writing, the Trustworthy Health and Wellness (THaW) project's bibliography includes more than 130 significant publications produced with support from the THaW grant; these publications document the progress made on many fronts by the THaW research team. The collection includes dissertations, theses, journal papers, conference papers, workshop contributions and more. The bibliography is organized as a Zotero library, which provides ready access to citation materials …

Effects Of Agricultural Intensification Practices On Smallholder Farmers’ Livelihood Outcomes In Kenyan Hotspots Of Climate Change, F. O. Ouya, O. I. Ayuya, M. I. Kariuki

All Peer-Reviewed Publications

Developing countries, Kenya included are mostly affected by food shortage and poverty as a result of high dependence on agriculture constrained by climate variability, declining land sizes and low agricultural technologies. Agricultural intensification is key in solving these problems to ensure increased farm output per unit land area. This study analyzed the role of agricultural intensification on smallholders’ poverty and food security status. The study is based on data collected from a sample of 320 smallholder households from two Sub-counties of Kenya, Makueni and Nyando. Principle Component Analysis (PCA) was first used to group agricultural intensification practices into clusters. The …

Niche Dynamics Of The Felid Guild Following The Pleistocene Megafaunal Extinction, Nicholas A. Freymueller

Biology ETDs

The loss of large carnivores is fundamentally restructuring modern mammal communities. However, large carnivore removal is not exclusively a modern trend. The Pleistocene Megafaunal Extinction (PME) resulted in a near-eradication of hyper-carnivorous felids such as saber-toothed cats. However, it is unclear if smaller surviving meso-felids began to infill this ecological vacuum post-PME. I apply Ecological Niche Modeling (ENM) to test evaluate whether surviving felids filled in vacant niches post-extinction, and hypothesize that they ought to have shown increased niche-overlap patterns with mega-felids post-extinction. I model species’ fundamental niches using a multi-temporal approach, and develop a novel test to model realized …

Rényi Entropy On C*-Algebras, Farrukh Mukhamedov, Kyouhei Ohmura, Noboru Watanabe

Journal of Stochastic Analysis

No abstract provided.

Sustainable Stocking Strategies Are Profitable In Managing For Climate Variability In A North Australian Savanna, Peter O’Reagain, John Bushell

IGC Proceedings (1977-2023)

No abstract provided.

Relationship Between Pre‐Wilting And In Vitro Digestibility Of Organic Matter, W. Opitz Von Boberfeld

IGC Proceedings (1977-2023)

No abstract provided.

Live Weight Gain Of Beef Cattle Steers On Panicum Maximum Cv. Tanzania Subjected To Intensities Of Rotational Grazing, Domicio Nascimento Jr., G. S. Difante, Valéria P. B. Euclides, Sila C. Da Silva, R. A. Torres

IGC Proceedings (1977-2023)

No abstract provided.

Petrology Of The Gradational Intrusive Contact Between The Packsaddle Schist And The Town Mountain Granite, Enchanted Rock State Natural Area, Llano Uplift, Central Texas, Travis Galle

Student Publications

The Mesoproterozoic intrusive contact between the ~1.1 Ga anorogenic Town

Mountain Granite and the ~1.3 Ga Packsaddle Schist is a gradational contact

exhumed within the Llano uplift. This contact is exposed along the southeastern

margin of the Enchanted Rock batholith in central Texas. Field observations,

hand sample and thin section petrography, and handheld X-ray fluorescence

analysis of hand samples were used to characterize the gradational nature of this

contact at multiple scales. The style of gradation between the Town Mountain

Granite and Packsaddle Schist varies throughout the study area, containing both

injection and permeation. The complex relationships observed at the …

Autocart: Spatially-Aware Regression Trees For Ecological And Spatial Modeling, Ethan Ancell

Fall Student Research Symposium 2020

Many ecological and spatial processes are complex in nature and are not accurately modeled by linear models. Regression trees promise to handle the high-order interactions that are present in ecological and spatial datasets, but fail to produce physically realistic characterizations of the underlying landscape. The "autocart'' (autocorrelative regression trees) R package extends the functionality of previously proposed spatial regression tree methods through a spatially aware splitting function and novel adaptive inverse distance weighting method in each terminal node. The efficacy of these autocart models, including an autocart extension of random forest, is demonstrated on multiple datasets. This highlights the ability …

The Impact Of Biological Components On A Dog's Personality, Kinsley Batson

Fall Student Research Symposium 2020

We interact with dogs every day, and they are often referred to as "man's best friend." But what makes a dog the happy-go-lucky, cuddly fur ball of happiness that so many love? Similar to humans, there is a nature vs. nurture debate on what shapes a dog's personality. While it is likely a mixture of both, I've researched a variety of biological components that help to make a dog a dog. Some of these include face shape, how their brain responds to audio stimuli, and a specific gene, also found in children with Williams syndrome, that is thought to make …

Why Dogs Are Feared, Hannah Ericson

Fall Student Research Symposium 2020

From German Shepherds to Pit bulls, a specific breed of dog is often singled out as being more dangerous than the others. There are stories and myths behind the behavior of such breeds, as well as simply looking scary. In this presentation, I will discuss why certain traits in dogs promote fear (such as dark coloring) and why certain breeds promote fear - such as a modern day prejudice that is quite similar to racism in the human society.

Cloning Type Iv-B Crispr System Into A Plasmid, Olivia Gornichec, Kailey Welch

Fall Student Research Symposium 2020

Bacterial CRISPR-Cas systems have recently been repurposed as RNA-guided genome editors in research labs across the world. Yet CRISPR-Cas adaptive immune systems are very diverse and many systems remain uncharacterized. Discovering the structure and function of newly discovered and uncharacterized systems may further advance existing genome editing technologies, or lead to new ones. To better understand the function of the little-researched Type IV-B system we cloned the genes of a Type IV-B system from Mycobacterium J623 into a plasmid containing a target sequence of a Type IV-A and Type V system. The Type IV-B system was placed on the target …

The Ideal Dog, Owen Graham

Fall Student Research Symposium 2020

The goal of this project was to look into all of the different jobs or tasks that we as humans have dogs perform and try to pinpoint what exactly it is that makes a dog ideal for each task. After identifying desirable characteristics, I considered physical traits in order to create an ideal dog that would be able to perform the greatest number of jobs possible.

Pure Breeding At Its Finest, Justin Hunter

Fall Student Research Symposium 2020

This is a poster of my research on the affects pure breeding has on dogs and their health. There is a focus as well on the focus on neoteny and its affects on dogs.

Modeling Reflectance Spectra Of Nanorod Arrays With Arrays Of Light Sources, Christian Lange

Fall Student Research Symposium 2020

It is known that carbon-nanotube forests, nanopillar arrays, and other formations of quasi-periodic nanostructures of various materials (semiconductors, semimetals, and metals) can display a very low light reflectance over a wide range of wavelengths, and that the reflectance eventually starts to rise beyond an onset wavelength. As these materials can be quite reflective in planar form, this phenomenon indicates that morphology rather than material plays a dominant role. However, a quantitative analysis of the reflectance spectra of periodic structures has yet to be established. As a first step, we use an array of light sources to model the reflection from …

Dog-Headed: Outcast To All, Wesley Mills

Fall Student Research Symposium 2020

Cynocephali are a group of mythological, dog-headed, humans that appear throughout various cultures. Despite the wide range of region and time period in which they are used, they consistently represent a quality of "otherness".