Physical Sciences and Mathematics Commons^™

Epipelagic Ocean Waters, Kate E. Watermeyer, Ryan R. Rykaczewski, Imants G. Priede, Tracey Sutton, David A. Keith

Marine & Environmental Sciences Faculty Books and Book Chapters

No abstract provided.

Human-Associated Species Dominate Passerine Communities Across The United States, Helen R. Sofaer, Curtis H. Flather, Catherine S. Jarnevich, Kristin P. Davis, Liba Pejchar

United States Geological Survey: Staff Publications

Aim: Human development and agriculture can have transformative and homogenizing effects on natural systems, shifting the composition of ecological communities towards non-native and native species that tolerate or thrive under human-dominated conditions. These impacts cannot be fully captured by summarizing species presence, as they include dramatic changes to patterns of species abundance. However, how human land use patterns and species invasions intersect to shape patterns of abundance and dominance within ecological communities is poorly understood even in well-known taxa.

Location: Conterminous United States.

Time period: 2010–2012.

Major taxa studied: Passeriformes.

Methods: We analyse continental-scale monitoring data to study the proportional …

Human-Associated Species Dominate Passerine Communities Across The United States, Helen R. Sofaer, Curtis H. Flather, Catherine S. Jarnevich, Kristin P. Davis

United States Geological Survey: Staff Publications

Aim: Human development and agriculture can have transformative and homogenizing effects on natural systems, shifting the composition of ecological communities towards non-native and native species that tolerate or thrive under human-dominated conditions. These impacts cannot be fully captured by summarizing species presence, as they include dramatic changes to patterns of species abundance. However, how human land use patterns and species invasions intersect to shape patterns of abundance and dominance within ecological communities is poorly understood even in well-known taxa.

Location: Conterminous United States.

Time period: 2010–2012.

Major taxa studied: Passeriformes.

Methods: We analyse continental-scale monitoring data to study the proportional …

Acoustic Space Occupancy: Combining Ecoacoustics And Lidar To Model Biodiversity Variation And Detection Bias Across Heterogeneous Landscapes, Danielle I. Rappaport, J. Andrew Royle, Douglas C. Morton

United States Geological Survey: Staff Publications

There is global interest in quantifying changing biodiversity in human-modified landscapes. Ecoacoustics may offer a promising pathway for supporting multi-taxa monitoring, but its scalability has been hampered by the sonic complexity of biodiverse ecosystems and the imperfect detectability of animal-generated sounds. The acoustic signature of a habitat, or soundscape, contains information about multiple taxa and may circumvent species identification, but robust statistical technology for characterizing community-level attributes is lacking. Here, we present the Acoustic Space Occupancy Model, a flexible hierarchical framework designed to account for detection artifacts from acoustic surveys in order to model biologically relevant variation in acoustic space …

Adjusting The Lens Of Invasion Biology To Focus On The Impacts Of Climate-Driven Range Shifts, Piper D. Wallingford, Toni Lyn Morelli, Jenica M. Allen, Evelyn M. Beaury, Dana M. Blumenthal, Bethany A. Bradley, Jeffrey S. Dukes, Regan Early, Emily J. Fusco, Deborah E. Goldberg, Inés Ibáñez, Brittany B. Laginhas, Montserrat Vilà, Cascade J.B. Sorte

United States Geological Survey: Staff Publications

As Earth’s climate rapidly changes, species range shifts are considered key to species persistence. However, some range-shifting species will alter community structure and ecosystem processes. By adapting existing invasion risk assessment frameworks, we can identify characteristics shared with high-impact introductions and thus predict potential impacts. There are fundamen- tal differences between introduced and range-shifting species, primarily shared evolutionary histories between range shifters and their new community. Nevertheless, impacts can occur via analogous mechanisms, such as wide dispersal, community disturbance and low biotic resistance. As ranges shift in response to climate change, we have an opportunity to develop plans to facilitate …

David Quentin Bowen: A Memorial, John T. Andrews, David R. Bridgland, Peter U. Clark, Thomas M. Cronin, Claude Hillaire-Marcel, Darrel Maddy, Gifford H. Miller, Daniel R. Muhs, Colin V. Murray-Wallace

United States Geological Survey: Staff Publications

The Quaternary community lost a giant and a leader on October 5, 2020, when David Quentin Bowen, known to many as “DQ” and founding editor of Quaternary Science Reviews, passed away in Cardiff. Born on February 14, 1938 in Llanelli, SouthWales, he received his PhD at University College London. David’s 50 years of contributions to our science cannot be adequately summarized in a brief memorial but past, present, and future generations of Quaternary scientists will long remember his landmark achievements in publishing, his scientific contributions, and his personal and professional class in all his endeavors.

Late Quaternary Sea-Level History Of Saipan, Commonwealth Of The Northern Mariana Islands, Usa: A Test Of Tectonic Uplift And Glacial Isostatic Adjustment Models, Daniel R. Muhs, Eugene S. Schweig, Kathleen R. Simmons

United States Geological Survey: Staff Publications

In 1979, S. Uyeda and H. Kanamori proposed a tectonic model with two end members of a subduction-boundary continuum: the “Chilean” type (shallow dip of the subducting plate, great thrust events, compression, and uplift of the overriding plate) and a “Mariana” type (steep dip of the subducting plate, no great thrust events, tension, and no uplift). This concept has been used to explain variable rates of Quaternary uplift around the Pacific Rim, yet no uplift rates have been determined for the Mariana Islands themselves, one of the end members in this model. We studied the late Quaternary Tanapag Limestone, which …

Size And Density Of Upside-Down Jellyfish, Cassiopea Sp., And Their Impact On Benthic Fluxes In A Caribbean Lagoon, Chester B. Zarnoch, Noshin Hossain, Erika Fusco, Mary Alldred, Timothy J. Hoellein, Sophia Perdikaris

School of Global Integrative Studies: Faculty Publications

Anthropogenic disturbances may be increasing jellyfish populations globally. Epibenthic jellyfish are ideal organisms for studying this phenomenon due to their sessile lifestyle, broad geographic distribution, and prevalence in near-shore coastal environments. There are few studies, however, that have documented epibenthic jellyfish abundance and measured their impact on ecological processes in tropical ecosystems. In this study, the density and size of the upside-down jellyfish (Cassiopea spp.) were measured in Codrington Lagoon, Barbuda. A sediment core incubation study, with and without Cassiopea, also was performed to determine their impact on benthic oxygen and nutrient fluxes. Densities of Cassiopea were 24–168 …

Influence Of Suspended Particle Size And Composition On Particle Image Processing, Estuarine Floc Fractal Properties, And Resulting Estuarine Light Attenuation, Kelsey Fall

Dissertations, Theses, and Masters Projects

Understanding the nature of suspended particles is crucial to explaining water clarity issues in many estuaries, including the Chesapeake Bay and its tidal tributaries. Typical near surface estuarine particles are not individual sediment grains, but rather are clusters of inorganic and organic components known as flocs. Because of their fragile nature, flocs are challenging to observe in-situ, so their influence on the optical properties of the system are not well-known. This dissertation used a combination of state-of-the-art optical instrumentation, including laser scattering and transmissometry, a high-definition particle imaging camera system (PICS), and irradiance meters, along with supporting laboratory analysis techniques …

Inorganic Carbon Chemistry In East Antarctic Coastal Polynyas, Mar C. Arroyo

Dissertations, Theses, and Masters Projects

Polynyas are large areas of open water or reduced sea ice coverage that persistently form in polar environments and often experience enhanced rates of physical, chemical, and biological processes that impact ocean dynamics on local to global scales. Polynyas that form adjacent to the coast, known as coastal polynyas, play an important role in the global carbon cycle by regulating the exchange of CO2 between the ocean and atmosphere in the high latitudes. Because of their importance to the global carbon cycle, there is a particular interest to better characterize CO2 system processes in Antarctic coastal polynyas. In this study, …

Environmental Controls On Pteropod Ecology And Physiology Along The Western Antarctic Peninsula, Patricia Susan Thibodeau

Dissertations, Theses, and Masters Projects

Pteropods (pelagic snails) are ubiquitous zooplankton in the Southern Ocean and abundant along the Western Antarctic Peninsula (WAP), one of the most rapidly warming regions on the planet. They are important prey for higher trophic levels, grazers of phytoplankton, and contribute to particulate organic and inorganic carbon export. Pteropods are heralded as bioindicators of ecosystem health due to the vulnerability of their aragonitic shells under ocean acidification conditions, which could greatly affect their abundances in the future. Despite their importance within Antarctic food webs, few studies have analyzed the effects of climate change on pteropod physiology and biogeography in the …

Missing Data Imputation Of High-Resolution Temporal Climate Time Series Data, Eben Afrifa-Yamoah, Ute A. Mueller, S. M. Taylor, A. J. Fisher

Research outputs 2014 to 2021

© 2020 The Authors. Meteorological Applications published by John Wiley & Sons Ltd on behalf of the Royal Meteorological Society. Analysis of high-resolution data offers greater opportunity to understand the nature of data variability, behaviours, trends and to detect small changes. Climate studies often require complete time series data which, in the presence of missing data, means imputation must be undertaken. Research on the imputation of high-resolution temporal climate time series data is still at an early phase. In this study, multiple approaches to the imputation of missing values were evaluated, including a structural time series model with Kalman smoothing, …

Simulating Storm Surge And Compound Flooding Events With A Creek-To-Ocean Model: Importance Of Baroclinic Effects, Fei Ye, Yinglong J. Zhang, Haocheng Yu, Weiling Sun, Saeed Moghimi, Edward Myers, Karinna Nunez, Ruoyin Zhang, Harry V. Wang, Aron Roland, Kevin Martins, Xavier Bertin, Jiabi Du, Zhou Liiu

VIMS Articles

We present a creek-to-ocean 3D baroclinic model based on unstructured grids that aims to unite traditional hydrologic and ocean models in a single modeling platform, by taking full advantage of the polymorphism (i.e. a single model grid can seamlessly morph between full 3D, 2DV, 2DH and quasi-1D configurations). Using Hurricane Irene (2011)'s impact on the Delaware Bay as an example, a seamless 2D-3D model grid is implemented to include the entire US East Coast and Gulf of Mexico with a highly resolved Delaware Bay (down to 20-m resolution). The model is forced by flows from a hydrological model (National Water …

Phenology Of Cupressaceae Urban Infrastructure Related To Its Pollen Content And Meteorological Variables, A. Monroy-Colín, J. M. Maya-Manzano, I. Silva-Palacios, R. Tormo-Molina, R. Pecero-Casimiro, Á. Gonzalo-Garijo, S. Fernández-Rodríguez

Articles

Cupressaceae pollen is one of the major airborne allergens of the Mediterranean region and in other regions around the world. Pollen production of these species causes considerable allergic problems during winter, being this type of pollen the most abundant in this period of the year. This work aims to relate phenology, meteorology and airborne pollen records in these species. Aerobiological sampling was carried out in Badajoz (SW Spain) from 2016 to 2018 using Hirst-type volumetric sampler. Pollination phenology was studied in 50 specimens, ten of Cupressus macrocarpa, ten of Cupressus arizonica, 15 of Cupressus sempervirens and 15 of …

Toward Closing The Urban Surface Energy Balance Using Satellite Remote Sensing, Joshua Hrisko

Dissertations and Theses

The energy exchanges at the Earth’s surface are responsible for many of the processes that govern weather, climate, human health, and energy use. This exchange, commonly known as the surface energy balance (SEB), determines the near-surface thermodynamic state by partitioning the available energy into surface fluxes. The net all-wave radiation is often the primary energy source, while the heat storage and sensible and latent heat fluxes account for the majority of energy distributed elsewhere. While the SEB of various natural environments(trees, crops, soils) has been well-observed and modeled, the urban surface energy balance remains elusive. This is due to the …

Dropsonde Observations Of The Ageostrophy Within The Pre-Cold-Frontal Low-Level Jet Associated With Atmospheric Rivers, Rueben Demirdgian, Joel R. Norris, Andrew Martin, F. Martin Ralph

Geography Faculty Publications and Presentations

The pre-cold-frontal low-level jet (LLJ) is an important contributor for water vapor transport within atmospheric rivers, though its dynamics are not completely understood. The present study investigates the LLJ using dropsonde observations from 24 cross-atmospheric river transects taken during the CalWater-2014, 2015 and the AR-Recon 2016, 2018 field campaigns. It is found that the LLJ, located at ;1-km elevation ahead of the cold front, has an average maximum wind speed of 30ms21 and is strongly supergeostrophic with an average ageostrophic component of 6ms21. The alongfront ageostrophy occurs within the atmospheric layer (750–1250 m) known to strongly control orographic precipitation associated …

Soil Carbon Dynamics And Greenhouse Gas Emissions In Conservation Tillage Systems At Multiple Scales, Yawen Huang

Theses and Dissertations--Plant and Soil Sciences

Conservation tillage practices like no-tillage and reduced tillage have been widely implemented worldwide, with expectations they would provide multiple benefits (e.g., yield enhancement and soil carbon sequestration) for food security and climate adaptation and mitigation. However, the adoption of conservation tillage faces both opportunities and challenges. A knowledge gap still exists regarding the effects of conservation tillage on the carbon cycle in agroecosystems. This dissertation reflects a comprehensive evaluation of conservation tillage at multiple scales using an integrated systems approach, a combination of data synthesis, the agriculture ecosystem model, and field observations and measurements. I first conducted a meta-analysis to …

The Fluxnet2015 Dataset And The Oneflux Processing Pipeline For Eddy Covariance Data, Gilberto Pastorello, Timothy Arkebauer, Dave P. Billesbach, Anatoly Gitelson, Adam Liska, Andrew Suyker, Elizabeth Walter-Shea, More Than 200 Other

Adam Liska Papers

The FLUXNET2015 dataset provides ecosystem-scale data on CO2, water, and energy exchange between the biosphere and the atmosphere, and other meteorological and biological measurements, from 212 sites around the globe (over 1500 site-years, up to and including year 2014). These sites, independently managed and operated, voluntarily contributed their data to create global datasets. Data were quality controlled and processed using uniform methods, to improve consistency and intercomparability across sites. The dataset is already being used in a number of applications, including ecophysiology studies, remote sensing studies, and development of ecosystem and Earth system models. FLUXNET2015 includes derived-data products, such as …

Decarbonization In Democracy, Shelley Welton

All Faculty Scholarship

Conventional wisdom holds that democracy is structurally ill-equipped to confront climate change. As the story goes, because each of us tends to dismiss consequences that befall people in other places and in future times, “the people” cannot be trusted to craft adequate decarbonization policies, designed to reduce present-day, domestic carbon emissions. Accordingly, U.S. climate change policy has focused on technocratic fixes that operate predominantly through executive action to escape democratic politics — with vanishingly little to show for it after a change in presidential administration. To help craft a more durable U.S. climate change strategy, this Article scrutinizes the purported …

Changes In Prey Mortality: The Efects Of Multiple Predators And Temperature On California Mussels, Wesley Hull

Cal Poly Humboldt theses and projects

Organisms serve as prey to a variety of predators within natural systems, detecting threats through physical and chemical means. While predator feeding behavior is also affected by the presence of other predators, it is unclear whether differing modes of detection have similar effects on predator feeding behavior. In rocky intertidal zones in northern California, the California mussel (Mytilus californianus) is a competitively dominant foundation species consumed by a variety of predators. I quantified the individual and combined effects of ochre star (Pisaster ochraceus) and rock crab (Romaleon antennarium) predation on mussels by implementing mussel …

Developing A Uas-Deployable Methane Sensor Using Low-Cost Modular Open-Source Components, Gavin Demali

Williams Honors College, Honors Research Projects

This project aimed to develop a methane sensor for deployment on an unmanned aerial system (UAS), or drone, platform. This design is centered around low cost, commercially available modular hardware components and open source software libraries. Once successfully developed, this system was deployed at the Bath Nature Preserve in Bath Township, Summit County Ohio in order to detect any potential on site fugitive methane emissions in the vicinity of the oil and gas infrastructure present. The deliverables of this project (i.e. the data collected at BNP) will be given to the land managers there to better inform future management and …

Projecting Regions Of North Atlantic Right Whale, Eubalaena Glacialis, Habitat Suitability In The Gulf Of Maine In 2050, Camille Ross

Honors Theses

North Atlantic right whales (Eubalaena glacialis) are endangered. Understanding the role environmental conditions play in habitat suitability is key to determining the regions in need of protection for conservation of the species, particularly as climate change shifts suitable habitat. This thesis uses three species distribution modeling algorithms, together with historical data on whale abundance(1993 to 2009) and environmental covariates to build monthly ensemble models of past E. glacialis habitat suitability in the Gulf of Maine. Then, the models are projected onto the year 2050 for a range of climate scenarios. Specifically, the distribution of the species was modeled …

Vertical Processes And Resolution Impact Ice Shelf Basal Melting: A Multi-Model Study, David E. Gwyther, Kazuya Kusahara, Xylar S. Asay-Davis, Michael S. Dinniman, Benjamin K. Galton-Fenzi

CCPO Publications

Understanding ice shelf–ocean interaction is fundamental to projecting the Antarctic ice sheet response to a warming climate. Numerical ice shelf–ocean models are a powerful tool for simulating this interaction, yet are limited by inherent model weaknesses and scarce observations, leading to parameterisations that are unverified and unvalidated below ice shelves. We explore how different models simulate ice shelf–ocean interaction using the 2nd Ice Shelf–Ocean Model Intercomparison Project (ISOMIP+) framework. Vertical discretisation and resolution of the ocean model are shown to have a significant effect on ice shelf basal melt rate, through differences in the distribution of meltwater fluxes and the …

Global Sea Level Reconstruction For 1900-2015 Reveals Regional Variability In Ocean Dynamics And An Unprecedented Long Weakening In The Gulf Stream Flow Since The 1990s, Tal Ezer, Sönke Dangendorf

CCPO Publications

A new monthly global sea level reconstruction for 1900-2015 was analyzed and compared with various observations to examine regional variability and trends in the ocean dynamics of the western North Atlantic Ocean and the U.S. East Coast. A proxy of the Gulf Stream (GS) strength in the Mid-Atlantic Bight (GS-MAB) and in the South Atlantic Bight (GS-SAB) were derived from sea level differences across the GS in the two regions. While decadal oscillations dominate the 116-year record, the analysis showed an unprecedented long period of weakening in the GS flow since the late 1990s. The only other period of long …

20th Century Multivariate Indian Ocean Regional Sea Level Reconstruction, Praveen Kumar, Benjamin Hamlington, Se-Hyeon Cheon, Weiqing Han, Phillip Thompson

CCPO Publications

Despite having some of the world's most densely populated and vulnerable coastlines, Indian Ocean sea level variability over the past century is poorly understood relative to other ocean basins primarily, due to the short and sparse observational records. In an attempt to overcome the limitations imposed by the lack of adequate observations, we have produced a 20th century Indian Ocean sea level reconstruction product using a new multivariate reconstruction technique. This technique uses sea level pressure and sea surface temperature in addition to sea level data to help constrain basin‐wide sea level variability by (1) the removal of large spurious …

Deep Equatorial Pacific Ocean Oxygenation And Atmospheric Co2 Over The Last Ice Age, Franco Marcantonio, Ryan Hostak, Jennifer E. Hertzberg, Matthew W. Schmidt

OES Faculty Publications

Ventilation of carbon stored in the deep ocean is thought to play an important role in atmospheric CO₂ increases associated with Pleistocene deglaciations. The presence of this respired carbon has been recorded by an array of paleoceanographic proxies from various locations across the global ocean. Here we present a new sediment core from the Eastern Equatorial Pacific (EEP) Ocean spanning the last 180,000 years and reconstruct high-resolution 230Th-derived fluxes of 232Th and excess barium, along with redox-sensitive uranium concentrations to examine past variations in dust delivery, export productivity, and bottom-water oxygenation, respectively. Our bottom-water oxygenation record is compared to …

Quantifying Seagrass Distribution In Coastal Water With Deep Learning Models, Daniel Perez, Kazi Islam, Victoria Hill, Richard Zimmerman, Blake Schaeffer, Yuzhong Shen, Jiang Li

OES Faculty Publications

Coastal ecosystems are critically affected by seagrass, both economically and ecologically. However, reliable seagrass distribution information is lacking in nearly all parts of the world because of the excessive costs associated with its assessment. In this paper, we develop two deep learning models for automatic seagrass distribution quantification based on 8-band satellite imagery. Specifically, we implemented a deep capsule network (DCN) and a deep convolutional neural network (CNN) to assess seagrass distribution through regression. The DCN model first determines whether seagrass is presented in the image through classification. Second, if seagrass is presented in the image, it quantifies the seagrass …

Towards Sustained Monitoring Of Subsidence At The Coast Using Insar And Gps: An Application In Hampton Roads, Virginia, Brett Buzzanga, David P.S. Bekaert, Ben D. Hamlington, Simran S. Sangha

OES Faculty Publications

Hampton Roads is among the regions along the U.S. Atlantic Coast experiencing high rates of relative sea level rise. Partly to mitigate subsidence from aquifer compaction, Hampton Roads is injecting treated wastewater into the underlying aquifer. However, the GPS (Global Positioning System) station spacing (∼30 km) is too coarse to capture the spatial variability of subsidence and potential uplift from the injection. We present a cost‐effective workflow for generating an InSAR (interferometric synthetic aperture radar) and GPS combined displacement product. We leverage a live, open‐access archive of InSAR products generated from Sentinel‐1 data. We find an overall subsidence rate of …

Bacterial Biofilms Colonizing Plastics In Estuarine Waters, With An Emphasis On Vibrio Spp. And Their Antibacterial Resistance, Amanda L. Laverty, Sebastian Primke, Claudia Lorenz, Gunnar Gerdtz, Fred Dobbs

OES Faculty Publications

Since plastics degrade very slowly, they remain in the environment on much longer timescales than most natural organic substrates and provide a novel habitat for colonization by bacterial communities. The spectrum of relationships between plastics and bacteria, however, is little understood. The first objective of this study was to examine plastics as substrates for communities of Bacteria in estuarine surface waters. We used next-generation sequencing of the 16S rRNA gene to characterize communities from plastics collected in the field, and over the course of two colonization experiments, from biofilms that developed on plastic (low-density polyethylene, high-density polyethylene, polypropylene, polycarbonate, polystyrene) …

Modelling Silicate - Nitrate - Ammonium Co-Limitation Of Algal Growth And The Importance Of Bacterial Remineralisation Based On An Experimental Arctic Coastal Spring Bloom Culture Study, Tobias R. Vonnahme, Martial Leroy, Silke Thoms, Dick Van Oevelen, H. Rodger Harvey, Svein Kristiansen, Rolf Gradinger, Christoph Voelker

OES Faculty Publications

Arctic coastal ecosystems are rapidly changing due to climate warming, which makes modelling their productivity crucially important to better understand future changes. System primary production in these systems is highest during the pronounced spring bloom, typically dominated by diatoms. Eventually the spring blooms terminate due to silicon or nitrogen limitation. Bacteria can play an important role for extending bloom duration and total CO2 fixation through ammonium regeneration. Current ecosystem models often simplify the effects of nutrient co-limitations on algal physiology and cellular ratios and neglect bacterial driven regeneration, leading to an underestimation of primary production. Detailed biochemistry- and cell-based models …