Physical Sciences and Mathematics Commons^™

Advanced Data Analysis Tools And Multi-Instrument Material Characterization, Bhupinder Singh

Theses and Dissertations

My dissertation focuses on (i) the development of new analysis tools and methodologies for analyzing X-ray photoelectron spectroscopy (XPS) and time-of-flight secondary ion mass spectrometry (ToF-SIMS) data, and (ii) the comprehensive characterization of materials (nanodiamonds) using a multi-instrument approach. Chapter 1 contains (i) a discussion of the two techniques I focused on most in my work: XPS and ToF-SIMS, (ii) a discussion of the common chemometrics techniques used to analyze data from these methods, and (iii) the advantages/rationale behind the multi-instrument characterization of materials. Chapter 2 describes various good practices for obtaining reasonable peak fits in XPS, which can also …

Molecular Modeling And Mutational Mapping Of The Gpr119 Binding Site, Shane M. Askar

Theses and Dissertations

GPR119 receptor’s biological role in regulating glucose homeostasis has been studied extensively. Results in the scientific literature indicate that, when activated, GPR119 releases insulin in a glucose dependent manner. Currently the 3D structure of GPR119 has not been resolved.

The goal of this research is to use a combination of homology modeling and ligand docking studies to predict the binding mode of GPR119 ligands. Amino acids implicated to have direct interactions with docked ligands will further be assessed experimentally for their roll in binding and activation of GPR119. Our results indicate that residues W2656.48 and R813.28 are likely to be …

Decomposition And Nitrogen Dynamics Of Turtle Grass (Thalassia Testudinum) In A Subtropical Estuarine System, Monica Delgado

Theses and Dissertations

Seagrass beds are pivotal in the functioning of coastal ecosystems in terms of productivity, organic matter turnover and nutrient cycling. Aiming to document decay and nitrogen (N) dynamics of turtle grass (Thalassia testudinum) in a subtropical estuarine system, decomposition patterns of leaves and rhizomes were characterized and compared. Nitrogen usage during decomposition of tissues, and of live tissues and epiphytes growing on live leaves, was also quantified and compared. Stable isotope ratios allowed tracing N within the seagrass bed, following N incorporation into seagrass tissues from the surrounding media (water, sediment). Leaves had a higher N content and decomposed at …

3d Reconstruction Of Close Range Objects Using Free And Open Source Software And Raspberry Pi Technologies, Juan Lorenzo Monrreal

Theses and Dissertations

Existing 3D rendering open source software along with Raspberry Pi technology can be used to create an affordable method and workflow for time efficient, accurate and quality scans for 3D printing. The emergence of technology spurs a technological community working to progress in a collaborative effort. This brings a potential to the possibility of efficient and economical solutions to emerging problems, in this case, the ability to render three dimensional scans using free and open source software as well as Raspberry Pi technology. The focus of this paper will be divided into three different aspects including the background needed to …

High-Resolution Correlation Of A Time-Bounded Unit Of The Pisco Formation, Peru, Daniel J. O'Hare

Loma Linda University Electronic Theses, Dissertations & Projects

Correlation of beds in the Pisco Basin across significant distances is problematic and has not yet been effectively achieved. I chose to examine an interval bounded by two time markers, an 40Ar/39Ar-dated white tuff at the base and an 40Ar/39Ar-dated tuff couplet at the top. This interval was chosen because of the continuity and excellent exposure of the tuff beds at six distinct locations in a linear transect 30 km long. Correlation of units was achieved through 40Ar/39Ar dating, lithology, sedimentary structures, and magnetic susceptibility. The vertical and lateral variability in lithology, fossil assemblages, structures, and sequences was examined in …

Soft-Sediment Deformation And Dune Collapse In The Navajo Sandstone, Colby Ford

Loma Linda University Electronic Theses, Dissertations & Projects

The Canyon Overlook Trail of Zion National Park follows an outcrop of Navajo Sandstone, which displays a uniquely well-exposed assemblage of features associated with failure of the lee face of a large eolian dune, and run-out over an expanse of interdune sediments downwind of that bedform. Exposed features include dramatic folds in the interdune succession and a stacked series of thrust sheets incorporating both interdune and overlying dune deposits. Thrust surfaces display consistent strikes, parallel to those of undeformed foresets, and incorporate zones of brittle failure and fluid deformation, including folds overturned in the direction of foreset dip. These features …

Automated Multi-Modal Search And Rescue Using Boosted Histogram Of Oriented Gradients, Matthew A. Lienemann

Master's Theses

Unmanned Aerial Vehicles (UAVs) provides a platform for many automated tasks and with an ever increasing advances in computing, these tasks can be more complex. The use of UAVs is expanded in this thesis with the goal of Search and Rescue (SAR), where a UAV can assist fast responders to search for a lost person and relay possible search areas back to SAR teams. To identify a person from an aerial perspective, low-level Histogram of Oriented Gradients (HOG) feature descriptors are used over a segmented region, provided from thermal data, to increase classification speed. This thesis also introduces a dataset …

Sparse Aperture Speckle Interferometry Telescope Active Optics Control System, Matthew Clause

Master's Theses

A conventional large aperture telescope required for binary star research is typically cost prohibitive. A prototype active optics system was created and fitted to a telescope frame using relatively low cost components. The active optics system was capable of tipping, tilting, and elevating the mirrors to align reflected star light. The low cost mirror position actuators have a resolution of 31 nm, repeatable to within 16 nm. This is accurate enough to perform speckle analysis for the visible light spectrum. The mirrors used in testing were not supported with a whiffletree and produced trefoil-like aberrations which made phasing two mirrors …

Production And Harvest Of Microalgae In Wastewater Raceways With Resource Recycling, Alexander Colin Roberts

Master's Theses

Microalgae can be grown on municipal wastewater media to both treat the wastewater and produce feedstock for algae biofuel production. However the reliability of treatment must be demonstrated, as well as high areal algae productivity on recycled wastewater media and efficient sedimentation harvesting. This processes was studied at pilot scale in the present research.

A pilot facility was operated with nine CO₂-supplemented raceway ponds, each with a 33-m² surface area and a 0.3-m depth, continuously from March 6, 2013 through September 24, 2014. The ponds were operated as three sets of triplicates with two sets continuously fed …

Development Of Dual-Cure Hybrid Polybenzoxazine Thermosets, Jananee Narayanan Sivakami

Dissertations

Polybenzoxazines are potential high performance thermoset replacements for traditional phenolic resins that can undergo an autocatalytic, thermally initiated ring - opening polymerization, and possess superior processing advantages including excellent shelf-life stability, zero volatile loss and limited volumetric shrinkage. The simplistic monomer synthesis and availability of a wide variety of inexpensive starting materials allows enormous molecular design flexibility for accessing a wide range of tailorable material properties for targeted applications. Despite the fact, once fully cured, benzoxazines are difficult to handle due to their inherent brittleness, leaving a very little scope for any modifications. The motivation of this dissertation is directed …

Asymmetric Synthesis Of Cα-Methyl-Γ- And Δ-Amino Acids From A Common Synthon And Evaluation Of Thionyl Chloride Assisted Peptide Esterifications, Emily Rose Vogel

Dissertations

C^α-methyl-γ- and δ-unnatural amino acids (UAAs) are important class of biomolecules used extensively as structural scaffolds, peptidomimetics, and in the development of pharmaceuticals. Due to steric congestion surrounding the quaternary center, asymmetric preparation of α,α-disubstituted UAAs are synthetically challenging. Herein, two methods for the synthesis of chiral synthons to prepare C^α-methyl-γ- and -δ-UAAs are reported. A crucial step in both strategies includes an enzymatic hydrolysis of prochiral malonic esters with pig liver esterase (PLE). The first method utilizes the Meyer Schuster rearrangement to prepare α,β-unsaturated diesters synthons, but the preparation of the precursor propargyl alcohol decomposes …

Black Male Students And The Algebra Project: Mathematics Identity As Participation, Melva R. Grant, Helen Crompton, Deanna J. Ford

STEMPS Faculty Publications

In this article, the authors examine the mathematics identity development of six Black male students over the course of a 4-year The Algebra Project Cohort Model (APCM) initiative. Mathematics identity here is defined as participation through interactions and positioning of self and others. Data collection included nearly 450 minutes of video recordings of small-group, mathematics problem solving in which student actions, coded as acts of participation, were tallied. These tallied actions were conceptualized descriptively in terms of mathematics identity using the lenses of agency, accountability, and work practices. The analyses suggest that the APCM students’ confidence in self and peers …

College Students' Perceptions Of Sustainability: A Regional Survey, Michael Myung Jeong, Younghan Jung, Dan Daehyun Koo

Engineering Technology Faculty Publications

Understanding college students’ perception of sustainability is paramount as today’s students will soon be driving our economy and taking on the responsibility of maintaining a sustainable society. This study conducted a survey of college students attending two regional universities in the United States to capture their current experience levels, expectations, and perceptions with regard to various aspects of sustainability utilizing a questionnaire consisting of structured questions about sustainability knowledge/familiarity levels, green product purchase behavior, attitude-behavior relationship, and sustainability education. The results reveal useful insights into the students’ views on these topics and the demographic data collected were further analyzed to …

Modeling Of Gas Production From Shale Reservoirs Considering Multiple Transport Mechanisms, Chaohua Guo, Mingzhen Wei, Hong Liu

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Gas transport in unconventional shale strata is a multi-mechanism-coupling process that is different from the process observed in conventional reservoirs. In micro fractures which are inborn or induced by hydraulic stimulation, viscous flow dominates. And gas surface diffusion and gas desorption should be further considered in organic nano pores. Also, the Klinkenberg effect should be considered when dealing with the gas transport problem. In addition, following two factors can play significant roles under certain circumstances but have not received enough attention in previous models. During pressure depletion, gas viscosity will change with Knudsen number; and pore radius will increase when …

Hierarchical Segmentation Of The Malawi Rift: The Influence Of Inherited Lithospheric Heterogeneity And Kinematics In The Evolution Of Continental Rifts, Daniel A. Lao-Davila, Haifa S. Al-Salmi, Mohamed G. Abdel Salam, Estella A. Atekwana

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

We used detailed analysis of Shuttle Radar Topography Mission-digital elevation model and observations from aeromagnetic data to examine the influence of inherited lithospheric heterogeneity and kinematics in the segmentation of largely amagmatic continental rifts. We focused on the Cenozoic Malawi Rift, which represents the southern extension of the Western Branch of the East African Rift System. This north trending rift traverses Precambrian and Paleozoic-Mesozoic structures of different orientations. We found that the rift can be hierarchically divided into first-order and second-order segments. In the first-order segmentation, we divided the rift into Northern, Central, and Southern sections. In its Northern Section, …

Prediction Of Laser Ablation In Brain: Sensitivity, Calibration, And Validation, Samuel J. Fahrenholtz

Dissertations and Theses (Open Access)

The surgical planning of MR-guided laser induced thermal therapy (MRgLITT) stands to benefit from predictive computational modeling. The dearth of physical model parameter data leads to modeling uncertainty. This work implements a well-accepted framework with three key steps for model-building: model-parameter sensitivity analysis, model calibration, and model validation.

The sensitivity study is via generalized polynomial chaos (gPC) paired with a transient finite element (FEM) model. Uniform probability distribution functions (PDFs) capture the plausible range of values suggested by the literature for five model parameters. The five PDFs are input separately into the FEM model to gain a probabilistic sensitivity response …

Voxel-Level Absorbed Dose Calculations With A Deterministic Grid-Based Boltzmann Solver For Nuclear Medicine And The Clinical Value Of Voxel-Level Calculations, Justin Mikell

Dissertations and Theses (Open Access)

Voxel-level absorbed dose (VLAD) is rarely calculated for nuclear medicine (NM) procedures involving unsealed sources or 90Y microspheres (YM). The current standard of practice for absorbed dose calculations in NM utilizes MIRD S-values, which 1) assume a uniform distribution in organs, 2) do not use patient specific geometry, and 3) lack a tumor model. VLADs overcome these limitations. One reason VLADs are not routinely performed is the difficulty in obtaining accurate absorbed doses in a clinically acceptable time. The deterministic grid-based Boltzmann solver (GBBS) was recently applied to radiation oncology where it was reported as fast and accurate for both …

Compression Bodies And Their Boundary Hyperbolic Structures, Vinh Xuan Dang

Theses and Dissertations

We study hyperbolic structures on the compression body C with genus 2 positive boundary and genus 1 negative boundary. We consider individual hyperbolic structures as well as special regions in the space of all such hyperbolic structures. We use some properties of the boundary hyperbolic structures on C to establish an interesting property of cusp shapes of tunnel number one manifolds. This extends a result of Nimershiem in [26] to the class of tunnel number one manifolds. We also establish convergence results on the geometry of compression bodies. This extends the work of Ito in [13] from the punctured-torus case …

Cooling Before Super-Eruption: No Role For Rejuvenation In The Cottonwood Wash Tuff Magma Body, Southern Great Basin Ignimbrite Province, Utah And Nevada, Keryn Tobler Ross

Theses and Dissertations

The model of rejuvenation of a near-solidus crystal mush to produce large volumes of crystal-rich magma is tested here by analyzing the mineralogical, chemical, modal, and physical characteristics of the 31.1 Ma super-eruptive (2000 km3) Cottonwood Wash Tuff. It is the oldest in a series of three so-called “monotonous intermediate” ignimbrites from the Indian Peak-Caliente volcanic field in southern Utah and Nevada. A crystal-rich (~50% Pl > Qz ≈ Hbl ≈ Bt > Mag ≈ Ilm > Cpx + Zrn + Ap+ Po) dacite (62 – 69 wt% SiO2), the Cottonwood Wash Tuff is similar in age, volume, mineralogy, crystallinity, and elemental composition …

Comparing The Strength Of Diagonally Non-Recursive Functions In The Absence Of Σ02 Induction, Francois G. Dorais, Jeffry L. Hirst, Paul Shafer

Dartmouth Scholarship

We prove that the statement "there is a k such that for every f there is a k-bounded diagonally non-recursive function relative to f" does not imply weak K\"onig's lemma over RCA0+BΣ02. This answers a question posed by Simpson. A recursion-theoretic consequence is that the classic fact that every k-bounded diagonally non-recursive function computes a 2-bounded diagonally non-recursive function may fail in the absence of IΣ02.

Tracking Anisotropic Optical Tracers To Study Biophysical Processes And Cytotoxicity, Khanh Van Nguyen

All Dissertations

We use anisotropic optical tracers (also called magnetically modulated optical nanoprobes – MagMOONs or MOONs for non-magnetic nanoprobes in this dissertation) to study biophysical processes such as enzyme-catalyzed cleavage through tissue, intracellular transport of these tracers and cytotoxicity based on this transport. The anisotropic optical properties cause these tracers to blink when rotating. This blinking is distinguishable from the background and can be tracked on a single-particle level in the absence of tissue, or for an ensemble average of tracers blinking through tissue. An alginate gel containing these tracers in the form of a thin film can be used as …

Bayesian Minimum Description Length Techniques For Multiple Changepoint Detection, Hewa Anuradha Priyadarshani

All Dissertations

This dissertation develops a minimum description length (MDL) multiple changepoint detection procedure that allows for prior distributions. MDL methods, which are penalized likelihood techniques with penalties based on data description-length information principles, have been successfully applied to many recent multiple changepoint problems. This work shows ow to modify the MDL penalty to account for various prior knowledge. Our motivation lies in climatology. Here, a metadata record, which is a file listing times when a recording station physically moved, instrumentation was changed, etc., sometimes exists. While metadata records are notoriously incomplete, they permit the construct a prior distribution that helps detect …

Downstream Bandwidth Management For Emerging Docsis-Based Networks, Gongbing Hong

All Dissertations

In this dissertation, we consider the downstream bandwidth management in the context of emerging DOCSIS-based cable networks. The latest DOCSIS 3.1 standard for cable access networks represents a significant change to cable networks. For downstream, the current 6 MHz channel size is replaced by a much larger 192 MHz channel which potentially can provide data rates up to 10 Gbps. Further, the current standard requires equipment to support a relatively new form of active queue management (AQM) referred to as delay-based AQM. Given that more than 50 million households (and climbing) use cable for Internet access, a clear understanding of …

Towards A Greater Understanding Of Hydrothermally Grown Garnets And Sesquioxide Crystals For Laser Applications, Cheryl Moore

All Dissertations

ABSTRACT The hydrothermal method of crystal growth offers many benefits over traditional melt-based techniques such as lower temperature requirements relieving detrimental high temperature effects such as stress fracturing and a closed-environment, which limits impurities. The continued study of this type of growth including hydrothermal epitaxy is crucial in our world of constant miniaturization. Presented in this thesis is the hydrothermal growth of crystals of LuAG and Lu2O3 doped with a variety of dopants. Their room-temperature and cryogenic absorption spectra are also presented. Much like Nature uses heat, pressure, water and a nutrient-rich feedstock we have used this hydrothermal technique to …

Sage-Grouse Nests In An Active Conifer Mastication Site, Charles P. Sandford, David K. Dahlgren, Terry A. Messmer

The Prairie Naturalist

Greater sage-grouse (Centrocercus urophasianus; sage-grouse) have experienced long-term range-wide population declines and now may occupy less than 50% of their historic range (Schroeder et al. 2004). Conifer encroachment into sagebrush (Artemisia spp.) habitat was identified as a major conservation threat by the United States Fish and Wildlife Service (USFWS) as the agency reviewed the listing status of the species for possible protection under the Endangered Species Act of 1973 (USFWS 2013).

Conifer encroachment into sagebrush habitats negatively impacts sage-grouse at landscape scales (Doherty et al. 2008, Casazza et al. 2011, Baruch-Mordo et al. 2013). Sage-grouse will utilize …

Social Learning Systems: The Design Of Evolutionary, Highly Scalable, Socially Curated Knowledge Systems, Nolan Hemmatazad

Student Work

In recent times, great strides have been made towards the advancement of automated reasoning and knowledge management applications, along with their associated methodologies. The introduction of the World Wide Web peaked academicians’ interest in harnessing the power of linked, online documents for the purpose of developing machine learning corpora, providing dynamical knowledge bases for question answering systems, fueling automated entity extraction applications, and performing graph analytic evaluations, such as uncovering the inherent structural semantics of linked pages. Even more recently, substantial attention in the wider computer science and information systems disciplines has been focused on the evolving study of social …

North Shore: A Natural History Of Minnesota’S Superior Coast, Janet R. Keough

The Prairie Naturalist

Many readers of The Prairie Naturalist have lived along or visited Lake Superior’s coast. Like me, you have probably wondered about the geology and history of this beautiful and dramatic feature of northeastern Minnesota. Chel Anderson and Adelheid Fischer have written an accessible book that comprehensively describes the history and geology of the coast, surrounding highlands, and Lake Superior itself. In addition, the authors have provided fascinating subchapters on some of the most interesting species that are key elements of the region.

This rather large but beautiful book is arranged in five major chapters that cover the dominant geological units …

Unveiling The Crucial Intermediates In Androgen Production, Piotr J. Mak, Michael C. Gregory, Ilia G. Denisov, Stephen G. Sligar, James R. Kincaid

Chemistry Faculty Research and Publications

Significance: The human enzyme cytochrome P450 17A1 (CYP17A1) catalyzes the critical step in the biosynthesis of the male sex hormones, and, as such, it is a key target for the inhibition of testosterone production that is necessary for the progression of certain cancers. CYP17A1 catalyzes two distinct types of chemical transformations. The first is the hydroxylation of the steroid precursors pregnenolone and progesterone. The second is a different reaction involving carbon–carbon (C-C) bond cleavage, the mechanism of which has been actively debated in the literature. Using a combination of chemical and biophysical methods, we have been able to trap and …

A Circle Has No End: Role Of Cyclic Topology And Accompanying Structural Reorganization On The Hole Distribution In Cyclic And Linear Poly‑P‑Phenylene Molecular Wires, Marat R. Talipov, Ramesh Jasti, Rajendra Rathore

Chemistry Faculty Research and Publications

π-Conjugated organic oligomers/polymers hold great promise as long-range charge-transfer materials for modern photovoltaic applications. However, a set of criteria for the rational design of functional materials is not yet available, in part because of a lack of understanding of charge distribution in extended π-conjugated systems of different topologies, and concomitant effects on redox and optical properties. Herein we demonstrate the role of cyclic versus linear topology in controlling the redox/optical properties and hole distribution in poly-p-phenylenes (PPs) with the aid of experiment, computation, and our recently developed multistate parabolic model (MPM). It is unequivocally shown that the hole …

Direct Observation Of Photoinduced Charge Separation In Ruthenium Complex/Ni(Oh)2 Nanoparticle Hybrid, Yu Tang, Brian Pattengale, John Ludwig, Abderrahman Atifi, Alexander V. Zinovev, Bin Dong, Qingyu Kong, Xiaobing Zuo, Xiaoyi Zhang, Jier Huang

Chemistry Faculty Research and Publications

Ni(OH)₂ have emerged as important functional materials for solar fuel conversion because of their potential as cost-effective bifunctional catalysts for both hydrogen and oxygen evolution reactions. However, their roles as photocatalysts in the photoinduced charge separation (CS) reactions remain unexplored. In this paper, we investigate the CS dynamics of a newly designed hybrid catalyst by integrating a Ru complex with Ni(OH)₂ nanoparticles (NPs). Using time resolved X-ray absorption spectroscopy (XTA), we directly observed the formation of the reduced Ni metal site (~60 ps), unambiguously demonstrating CS process in the hybrid through ultrafast electron transfer from Ru complex to …