Physical Sciences and Mathematics Commons^™

Breaking Of Thunderstorm-Generated Gravity Waves As A Source Of Short-Period Ducted Waves At Mesopause Altitudes, Jonathan B. Snively, Victor P. Pasko

Publications

Numerical simulation results indicate that the breaking of atmospheric gravity waves generated by tropospheric convection can excite short-period secondary waves, which are trapped in the lower thermospheric duct and which closely resemble quasi-monochromatic structures commonly observed in airglow imaging experiments.

Comparison Of The Inverse Probability Of Treatment Weighted (Iptw) Estimator With A Naïve Estimator In The Analysis Of Longitudinal Data With Time-Dependent Confounding: A Simulation Study, Thaddeus Haight, Romain Neugebauer, Ira B. Tager, Mark J. Van Der Laan

U.C. Berkeley Division of Biostatistics Working Paper Series

A simulation study was conducted to compare estimates from a naïve estimator, using standard conditional regression, and an IPTW (Inverse Probability of Treatment Weighted) estimator, to true causal parameters for a given MSM (Marginal Structural Model). The study was extracted from a larger epidemiological study (Longitudinal Study of Effects of Physical Activity and Body Composition on Functional Limitation in the Elderly, by Tager et. al [accepted, Epidemiology, September 2003]), which examined the causal effects of physical activity and body composition on functional limitation. The simulation emulated the larger study in terms of the exposure and outcome variables of interest-- physical …

Seasonal Variation And Ecosystem Dependence Of Emission Factors For Selected Trace Gases And Pm2.5 For Southern African Savanna Fires, S. Korontzi, Darold E. Ward, Ronald A. Susott, Robert J. Yokelson, C. O. Justice, Peter V. Hobbs, E.A. H. Smithwick, Wei Min Hao

Chemistry and Biochemistry Faculty Publications

[1] In this paper we present the first early dry season (early June-early August) emission factor measurements for carbon dioxide (CO₂), carbon monoxide (CO), methane (CH₄), nonmethane hydrocarbons (NMHC), and particulates with a diameter less than 2.5 μm (PM_2.5) for southern African grassland and woodland fires. Seasonal emission factors for grassland fires correlate linearly with the proportion of green grass, used as a surrogate for the fuel moisture content, and are higher for products of incomplete combustion in the early part of the dry season compared with later in the dry season. Models of …

Multiple Testing. Part Ii. Step-Down Procedures For Control Of The Family-Wise Error Rate, Mark J. Van Der Laan, Sandrine Dudoit, Katherine S. Pollard

U.C. Berkeley Division of Biostatistics Working Paper Series

The present article proposes two step-down multiple testing procedures for asymptotic control of the family-wise error rate (FWER): the first procedure is based on maxima of test statistics (step-down maxT), while the second relies on minima of unadjusted p-values (step-down minP). A key feature of our approach is the test statistics null distribution (rather than data generating null distribution) used to derive cut-offs (i.e., rejection regions) for these test statistics and the resulting adjusted p-values. For general null hypotheses, corresponding to submodels for the data generating distribution, we identify an asymptotic domination condition for a null distribution under which the …

Dual Stage Microvalue And Method Of Use, Marc J. Madou, Sylvia Daunert

Chemistry Faculty Patents

A micro-machined drug delivery device and method of use for the delivery of labile drugs is disclosed. A micro-machined sensing device and method of use is also disclosed. A micro-machined drug delivery and sensing device and method of use is additionally disclosed. All three devices are intended to be inserted into a patient's body. The drug delivery devices allow for the mixing of drug components prior to the release of the mixture into the patient's body where the mixture is labile. The micro-machined sensing device is suitable for monitoring the concentration of a specific chemical in a patient's body fluids …

Where Are The Women Geoscientist Professors?, Mary Anne Holmes, Suzanne O'Connell

Department of Earth and Atmospheric Sciences: Faculty Publications

Nearly 50 geo- and social scientists recently gathered for a workshop on women in the geosciences. The two-fold purpose was to compile data on the status of women in the geosciences, and to arrive at a consensus on strategies to increase the proportion of women and their diversity in the field. The Workshop on Women in the Geosciences was held September 25-27, 2003, in Washington, D.C.

Multiple Testing. Part I. Single-Step Procedures For Control Of General Type I Error Rates, Sandrine Dudoit, Mark J. Van Der Laan, Katherine S. Pollard

U.C. Berkeley Division of Biostatistics Working Paper Series

The present article proposes general single-step multiple testing procedures for controlling Type I error rates defined as arbitrary parameters of the distribution of the number of Type I errors, such as the generalized family-wise error rate. A key feature of our approach is the test statistics null distribution (rather than data generating null distribution) used to derive cut-offs (i.e., rejection regions) for these test statistics and the resulting adjusted p-values. For general null hypotheses, corresponding to submodels for the data generating distribution, we identify an asymptotic domination condition for a null distribution under which single-step common-quantile and common-cut-off procedures asymptotically …

Experimenting With Tcpa/Tcg Hardware, Or: How I Learned To Stop Worrying And Love The Bear, John Marchesini, Sean Smith, Omen Wild, Rich Macdonald

Computer Science Technical Reports

Over the last few years, our group has been working on applications of secure coprocessors---but has been frustrated by the limited computational environment and high expense of such devices. Over the last few years, the TCPA (now TCG) has produced a specification for a trusted platform module (TPM)---a small hardware addition intended to improve the overall security of a larger machine (and tied up with a still-murky vision of Windows-based trusted computing). Some commodity desktops now come up with these TPMs. Consequently, we began an experiment to see if (in the absence of a Non-Disclosure Agreement) we could use this …

Investigation Of Nanodispersion In Polystyrene-Montmorillonite Nanocomposites By Solid State Nmr, Serge Bourbigot, David L. Vanderhart, Jeffery W. Gilman Sr., Walid Awad, Rick D. Davis, Alexander B. Morgan, Charles A. Wilkie

Chemistry Faculty Research and Publications

Nanocomposites result from combinations of materials with vastly different properties in the nanometer scale. These materials exhibit many unique properties such as improved thermal stability, reduced flammability, and improved mechanical properties. Many of the properties associated with polymer–clay nanocomposites are a function of the extent of exfoliation of the individual clay sheets or the quality of the nanodispersion. This work demonstrates that solid-state NMR can be used to characterize, quantitatively, the nanodispersion of variously modified montmorillonite (MMT) clays in polystyrene (PS) matrices. The direct influence of the paramagnetic Fe3, embedded in the aluminosilicate layers of MMT, on polymer protons within …

Strong Field Detachment Of A Negative Ion With Non-Zero Angular Momentum: Application To F-, M. V. Frolov, N. L. Manakov, E. A. Pronin, Anthony F. Starace

Anthony F. Starace Publications

We apply our recently developed, model-independent quantum approach for intense laser detachment of a weakly bound electron to interpret a recent experiment on above-threshold detachment (ATD) of the F^- ion. We find that the measured electron energies correspond to the “Keldysh part” of the ATD spectrum, just below the onset of our predicted rescattering plateau. Overall, our predicted ATD spectrum (using a scaled peak intensity and focal averaging) is in excellent agreement with the experimental data, except for certain structures observed for electron energies above 12.6 eV that we attribute to known two-electron resonances of F^-. A …

The Use Of Selected Water Quality Parameters To Identify Fecal Coliform Sources In Support Of The Sinking Creek Total Maximum Daily Load., Susana Maria Floresguerra

Electronic Theses and Dissertations

Sinking Creek, located in upper east Tennessee, is on the 303(d) list for not meeting minimum water quality standards for recreation. A Total Maximum Daily Load (TMDL) for fecal coliforms was developed. The purpose of this study was to investigate the use of water quality parameters to identify areas that contribute to the fecal coliform loading. Concentrations of nitrate-N, orthophosphates, BOD, alkalinity, hardness, and optical brighteners (OB) were monitored at fourteen stations monthly for one year. Site 3 (agricultural region) exhibited the highest average nitrate-N loadings (627.34 mg/sec) and orthophosphate (as PO₄^3-) loadings (84.83 mg/sec). Alkalinity loadings …

Towards A Taxonomy Of Aspect-Oriented Programming., Mario Bernard Hankerson

Electronic Theses and Dissertations

As programs continue to increase in size, it has become increasingly difficult to separate concerns into well localized modules, which leads to code tangling- crosscutting code spread throughout several modules. Thus, Aspect-Oriented Programming (AOP) offers a solution to creating modules with little or no crosscutting concerns. AOP presents the notion of aspects, and demonstrates how crosscutting concerns can be taken out of modules and placed into a centralized location.

In this paper, a taxonomy of aspect-oriented programming, as well as a basic overview and introduction of AOP, will be presented in order to assist future researchers in getting started on …

Interworking Methodologies For Dcom And Corba., Edwin Kraus

Electronic Theses and Dissertations

The DCOM and CORBA standards provide location-transparent access to network-resident software through language independent object interfaces. Although the two standards address similar problems, they do so in incompatible ways: DCOM clients cannot use CORBA objects, and CORBA clients cannot utilize DCOM objects, due to incompatible object system infrastructures.

This thesis investigates the performance of bridging tools to resolve the incompatibilities between DCOM and CORBA, in ways that allow clients to cross object system boundaries. Two kinds of tools were constructed and studied: tools that bind clients to services at compile time, and tools that support dynamic client-server bindings. Data developed …

Measurement Of Prompt Charm Meson Production Cross Sections In Pp̅ Collisions At √S=1.96 Tev, Darin Acosta, Kenneth A. Bloom, Collider Detector At Fermilab Collaboration

Kenneth Bloom Publications

We report on measurements of differential cross sections d /dpT for prompt charm meson production in pp̅ collisions at √s=1.96 TeV using 5.8±0.3 pb^-1 of data from the CDF II detector at the Fermilab Tevatron. The data are collected with a new trigger that is sensitive to the long lifetime of hadrons containing heavy flavor. The charm meson cross sections are measured in the central rapidity region |y|≤1 in four fully reconstructed decay modes: D⁰→K^- π⁺, D*+→D⁰ π⁺, D⁺→K^- π⁺ π⁺, …

Natural History Of The Mole Salamander Ambystoma Talpoideum In Virginia, Michael Scott Hayslett

Theses & Honors Papers

The Mole Salamander (Ambystoma talpoideum) has been known from Virginia for over two decades, but no intensive research on this state-rare species had been pursued prior to this project. Various aspects of mole salamander natural history were studied over a seven-year period throughout a seven-county area of central Virginia. New state distribution records for the species were recorded from Amherst, Appomattox, Buckingham, Campbell, Nelson, and Pittsylvania Counties. These records include a range of extension with the most northern occurrence known for this species in the United States.

Drift fence/pitfall trap studies were conducted on three ponds in two …

Increasing Security In Mobile Ad Hoc Networks By Incentives To Cooperate And Secure Routing, Brandy Michelle Tyson

Electronic Dissertations and Theses

A mobile ad hoc network is a self-organizing network that relies on the cooperation of participating nodes in order to function properly. In this network, mobile users arrive within the common range of a wireless link and collaborate in constructing the network topology in order to facilitate communication. Mobile ad hoc networks do not rely on any fixed, centralized routing infrastructure, so there is no base station to provide connectivity. This must be provided by the participating nodes. Although mobile ad hoc networks are quite beneficial in sparse areas and rescue operations, they have several properties, such as unreliable wireless …

He I Λ10830 As A Probe Of Winds In Accreting Young Stars, Suzan Edwards, William Fischer, John Kwan, L. Hillenbrand, Andrea K. Dupree

Astronomy: Faculty Publications

He I 10830 profiles acquired with Keck's NIRSPEC for six young low-mass stars with high disk accretion rates (AS 353A, DG Tau, DL Tau, DR Tau, HL Tau, and SVS 13) provide new insight into accretion-driven winds. In four of the stars, the profiles have the signature of resonance scattering, and they possess a deep and broad blueshifted absorption that penetrates more than 50% into the 1 m continuum over a continuous range of velocities from near the stellar rest velocity to the terminal velocity of the wind, unlike inner wind signatures seen in other spectral features. This deep and …

Linear Perturbations In Brane Gas Cosmology, Scott Watson, Robert H. Brandenberger

Physics - All Scholarship

We consider the effect of string inhomogeneities on the time dependent background of Brane Gas Cosmology. We derive the equations governing the linear perturbations of the dilaton-gravity background in the presence of string matter sources. We focus on long wavelength fluctuations and find that there are no instabilities. Thus, the predictions of Brane Gas Cosmology are robust against the introduction of linear perturbations. In particular, we find that the stabilization of the extra dimensions (moduli) remains valid in the presence of dilaton and string perturbations.

Spatiotemporal Databases: Models For Attracting Students To Research, Ágnes Bércesné Novák, Peter Revesz, Zsolt Tuza

School of Computing: Conference and Workshop Papers

In higher education professors often make much effort to introduce their students to research. Unfortunately, the present standard database systems curriculum is composed of well-settled subjects that do not lead to research. The challenge is to bring the research frontier closer to students at beginner level. In this paper we describe how it can be done in the area of spatiotemporal databases. We propose a new database systems curriculum and illustrate its benefits by mentioning several highly succsesful student projects in some recent experimental introductory database systems courses that followed the new curriculum.

Anisotropic Splitting Of Intersubband Spin Plasmons In Quantum Wells With Bulk And Structural Inversion Asymmetry, Carsten A. Ullrich, M. E. Flatté

Physics Faculty Research & Creative Works

In semiconductor heterostructures, bulk and structural inversion asymmetry and spin-orbit coupling induce a k-dependent spin splitting of valence and conduction subbands, which can be viewed as being caused by momentum-dependent crystal magnetic fields. This paper studies the influence of these effective magnetic fields on the intersubband spin dynamics in an asymmetric n-type GaAs/Al_0.3Ga_0.7As quantum well. We calculate the dispersions of intersubband spin plasmons using linear-response theory. the so-called D'yakonov-Perel' decoherence mechanism is inactive for collective intersubband excitations, i.e., crystal magnetic fields do not lead to decoherence of spin plasmons. Instead, we predict that the main signature …

Loss-Based Estimation With Cross-Validation: Applications To Microarray Data Analysis And Motif Finding, Sandrine Dudoit, Mark J. Van Der Laan, Sunduz Keles, Annette M. Molinaro, Sandra E. Sinisi, Siew Leng Teng

U.C. Berkeley Division of Biostatistics Working Paper Series

Current statistical inference problems in genomic data analysis involve parameter estimation for high-dimensional multivariate distributions, with typically unknown and intricate correlation patterns among variables. Addressing these inference questions satisfactorily requires: (i) an intensive and thorough search of the parameter space to generate good candidate estimators, (ii) an approach for selecting an optimal estimator among these candidates, and (iii) a method for reliably assessing the performance of the resulting estimator. We propose a unified loss-based methodology for estimator construction, selection, and performance assessment with cross-validation. In this approach, the parameter of interest is defined as the risk minimizer for a suitable …

A Subgroup Algorithm To Identify Cross-Rotation Peaks Consistent With Non-Crystallographic Symmetry, Ryan H. Lilien, Chris Bailey-Kellogg, Amy C. Anderson, Bruce R. Donald

Computer Science Technical Reports

Molecular replacement (MR) often plays a prominent role in determining initial phase angles for structure determination by X-ray crystallography. In this paper, an efficient quaternion-based algorithm is presented for analyzing peaks from a cross-rotation function to identify model orientations consistent with non-crystallographic symmetry (NCS), and to generate NCS-consistent orientations missing from the list of cross-rotation peaks. Our algorithm, CRANS, analyzes the rotation differences between each pair of cross-rotation peaks to identify finite subgroups of NCS. Sets of rotation differences satisfying the subgroup axioms correspond to orientations compatible with the correct NCS. The CRANS algorithm was first tested using cross-rotation peaks …

Equilibrium Problems With Equilibrium Constraints Via Multiobjective Optimization, Boris S. Mordukhovich

Mathematics Research Reports

The paper concerns a new class of optimization-related problems called Equilibrium Problems with Equilibrium Constraints (EPECs). One may treat them as two level hierarchical problems, which involve equilibria at both lower and upper levels. Such problems naturally appear in various applications providing an equilibrium counterpart (at the upper level) of Mathematical Programs with Equilibrium Constraints (MPECs). We develop a unified approach to both EPECs and MPECs from the viewpoint of multiobjective optimization subject to equilibrium constraints. The problems of this type are intrinsically nonsmooth and require the use of generalized differentiation for their analysis and applications. This paper presents necessary …

A Study Of The Suitability Of Irobex For High-Speed Exchange Of Large Data Objects, Casey T. Deccio, Joseph Ekstrom, Charles D. Knutson, D. Ryan Partridge, Kevin B. Tew

Faculty Publications

This paper demonstrates that careful tuning of the OBEX and IrLAP negotiated parameters allows OBEX to scale well for use with large data objects and high transmission rates. Due to the substantial time overhead inherent in link turnarounds, minimizing turnarounds during the transmission of a large object helps to maximimize link efficiency. The IrLAP window size and OBEX packet size significantly impact the number of required turnarounds during the transmission of a large object. When these parameters are properly tuned, maximum throughput can be achieved, and OBEX performs efficiently at high data rates.

Delineation Of Mass Movement Prone Areas By Landsat 7 And Digitial Image Processing, Shiloh Marie Howland

Theses and Dissertations

The problem of whether Landsat 7 data could be used to delineate areas prone to mass movement, particularly debris flows and landslides, was examined using three techniques: change detection in NDVI (Normalized Difference Vegetation Index), change detection in band 5, and the tasseled cap transformation. These techniques were applied to areas that had recently experienced mass movement: Layton, Davis County and Alpine, Spanish Fork Canyon and Santaquin, Utah County. No distinctive spectral characteristics were found with any of these techniques with two possible explanations: 1. That despite improved spatial resolution in Landat 7 over its predecessors and improved digital image …

Comprehensive Laboratory Measurements Of Biomass-Burning Emissions: 1. Emissions From Indonesian, African, And Other Fuels, Ted J. Christian, B. Kleiss, Robert J. Yokelson, R. Holzinger, P. J. Crutzen, Wei Min Hao, B. H. Saharjo, Darold E. Ward

Chemistry and Biochemistry Faculty Publications

[1] Trace gas and particle emissions were measured from 47 laboratory fires burning 16 regionally to globally significant fuel types. Instrumentation included the following: open-path Fourier transform infrared spectroscopy; proton transfer reaction mass spectrometry; filter sampling with subsequent analysis of particles with diameter <2.5 μm for organic and elemental carbon and other elements; and canister sampling with subsequent analysis by gas chromatography (GC)/flame ionization detector, GC/electron capture detector, and GC/mass spectrometry. The emissions of 26 compounds are reported by fuel type. The results include the first detailed measurements of the emissions from Indonesian fuels. Carbon dioxide, CO, CH₄, NH₃, HCN, methanol, and acetic acid were the seven most abundant emissions (in order) from burning Indonesian peat. Acetol (hydroxyacetone) was a major, previously unobserved emission from burning rice straw (21–34 g/kg). The emission factors for our simulated African fires are consistent with field data for African fires for compounds measured in both …

An Iterative Beam Search Algorithm For Degenerate Primer Selection, Richard Souvenir

All Computer Science and Engineering Research

Single Nucleotide Polymorphism (SNP) Genotyping is an important molecular genetics process in the early stages of producing results that will be useful in the medical field. Due to inherent complexities in DNA manipulation and analysis, many different methods have been proposed for a standard assay. One of the proposed techniques for performing SNP Genotyping requires amplifying regions of DNA surrounding a large number of SNP loci. In order to automate a portion of this particular method, it is necessary to select a set of primers for the experiment. Selecting these primers can be formulated as the Multiple Degenerate Primer Design …

Resource Configuration And Network Design In Extensible Networks, Sumi Y. Choi

All Computer Science and Engineering Research

The goal of packet-switched networks has conventionally been delivering data to users. This concept is changing rapidly as current technologies make it possible to build network processing engines that apply intermediary services to data traffic. This trend introduces an extensive range of ways to develop and operate applications by allowing processing services customized for applications' needs at intermediate network users, as it can relieve individuals from the need to acquire, install, and maintain software in end systems to perform required functions. As such network services become more widely used, it will become increasingly important for service providers to have effective …

Efficient Customizable Middleware, Ravi Pratap Maddimsetty

All Computer Science and Engineering Research

The rather large feature set of current Distributed Object Computing (DOC) middleware can be a liability for certain applications which have a need for only a certain subset of these features but have to suffer performance degradation and code bloat due to all the present features. To address this concern, a unique approach to building fully customizable middleware was undertaken in FACET, a CORBA event channel written using AspectJ. FACET consists of a small, essential core that represents the basic structure and functionality of an event channel into which additional features are woven using aspects so that the resulting event …

Necessary Conditions In Nonsmooth Minimization Via Lower And Upper Subgradients, Boris S. Mordukhovich

Mathematics Research Reports

The paper concerns first-order necessary optimality conditions for problems of minimizing nonsmooth functions under various constraints in infinite-dimensional spaces. Based on advanced tools of variational analysis and generalized differential calculus, we derive general results of two independent types called lower subdifferential and upper subdifferential optimality conditions. The former ones involve basic/limiting subgradients of cost functions, while the latter conditions are expressed via Frechetjregular upper subgradients in fairly general settings. All the upper subdifferential and major lower subdifferential optimality conditions obtained in the paper are new even in finite dimensions. We give applications of general optimality conditions to mathematical programs with …