Physical Sciences and Mathematics Commons^™

Improved Kernel Security Through Code Validation, Diversification, And Minimization, Dannie Michael Stanley

Open Access Dissertations

The vast majority of hosts on the Internet, including mobile clients, are running one of three commodity, general-purpose operating system families. In such operating systems the kernel software executes at the highest processor privilege level. If an adversary is able to hijack the kernel software then by extension he has full control of the system. This control includes the ability to disable protection mechanisms and hide evidence of compromise.

The lack of diversity in commodity, general-purpose operating systems enables attackers to craft a single kernel exploit that has the potential to infect millions of hosts. If enough variants of the …

Utilization Of Biomass Derived Furans In Value-Added Organics And Heterogeneous Oxorhenium Catalysts For Deoxydehydration Of Diols, Benjamin L. Wegenhart

Open Access Dissertations

As fossil fuels are depleted, there is a growing focus on renewable chemicals based on biomass materials, including both fuels and chemical feedstocks. Current methods for biomass utilization include biological conversion to produce ethanol and various thermochemical routes (gasification, pyrolysis, liquefaction, hydrothermal treatment, etc.). Furfural is one particular chemical that can be obtained from lignocellulosic biomass in good yields through the dehydration of sugar residues. It can be used as a feedstock for chemicals such as furan and THF, or as a platform molecule for making liquid fuels. The objective of this research is to investigate new pathways for the …

Scholarly Collaboration In Engineering Education: From Big-Data Scientometrics To User-Centered Software Design, Hanjun Xian

Open Access Dissertations

Engineering education research has grown into a flourishing community with an-ever increasing number of publications and scholars. However, recent studies show that a significant amount of engineering education knowledge retains a clear disciplinary orientation. If the gaps in scholarly collaboration continue to be prevalent within the entire community, it will become increasingly difficult to sustain community memory. This will eventually inhibit the propagation of innovations and slow the movement of research findings into practice.

This dissertation studies scholarly collaboration in the engineering education research community. It provides a clear characterization of collaboration problems and proposes potential solutions. The dissertation is …

Atomistic Simulation Of Plasma Interaction With Plasma Facing Components In Fusion Reactors, Xue Yang

Open Access Dissertations

The interaction between plasma and fusion relevant materials is one of the critical issues in successfully using those materials in Tokamak reactors. This research uses molecular dynamics, kinetic Monte Carlo and binary collision approximation methods to model fusion relevant material bombarded by energetic particles to investigate retention, deposition, sputtering, erosion, blistering effects, diffusion, and so on.

The deuterium bombardment of monocrystalline tungsten was modeled by LAMMPS code using Tersoff type interatomic potential. The deuterium trapping rate, implantation depth, and stopping time in 600-2000 K tungsten bombarded by 5-100 eV deuterium atoms were simulated. Irradiated monocrystalline tungsten became amorphous prior to …

Design And Assembly Of Nanostructured Complex Metal Oxide Materials For The Construction Of Batteries And Thermoelectric Devices, Gautam Ganapati Yadav

Open Access Dissertations

Thermoelectric devices and lithium-ion batteries are among the fastest growing energy technologies. Thermoelectric devices generate energy from waste heat, whereas lithium-ion batteries store energy for use in commercial applications. Two different topics are bound with a common thread in this thesis - nanotechnology! In fact, nanostructuring is a more preferred term for the approach I have taken herein. Another commonality between these two topics is the material system I have used to prove my hypotheses - complex metal oxides.

Complex metal oxides can be used for both energy generation and storage as they are stable at high temperatures, are benign …

Instrumentation, Applications And Fundamentals Of Plasma Ionization Of Organic Molecules From Surfaces, Joshua Scott Wiley

Open Access Dissertations

Various aspects of the interaction of low-temperature plasma (LTP) ambient ionization with organic molecules and surfaces are discussed. As an application, LTP-MS has been used for the analysis of pesticides directly from fruits and vegetables revealing low parts per billion limits of detection (LODs). Due to low power and gas requirements, a battery-operated and handheld LTP probe was developed for the point-and-shoot MS analyses. Handheld LTP was compared with large-scale LTP on a benchtop and miniature MS revealing similar LODs for both. Long-distance ion transport up to one meter was also demonstrated with flexible tubing for non-proximate sample interrogation. Fundamentals …

Gamma-Ray Observations Of X-Ray Binaries, Angelo Varlotta

Open Access Dissertations

The detection of GeV/TeV emission from X-ray binaries (XRBs) has established a new class of high-energy (HE, >0.1 GeV) and very-high-energy (VHE, >100 GeV) gamma-ray emitters. XRBs are formed by a compact object, either a neutron star or a black hole, and by an optical companion star. Some XRBs are known to possess collimated relativistic jets, and are called microquasars. VERITAS has conducted observations of the high-mass X-ray binary (HMXB) 1A 0535+262 and of the microquasar Cygnus X-3. Many theoretical models predict VHE emission when these sources manifest persistent relativistic jets or transient ejections. In light of these considerations, VERITAS …

Gas-Phase Covalent And Non-Covalent Ion/Ion Chemistry Of Biological Macromolecules, John Robert Stutzman

Open Access Dissertations

Gas-phase ion/ion chemistry involves the interaction of oppositely charged ions inside of the mass spectrometer. During this gas-phase chemistry, particle transfer (i.e., proton and electron) or synthesis can occur at rapid reaction rates. Particle transfer represents a mature area of ion/ion chemistry, while selective covalent modification represents a fairly new area of gas-phase chemistry. Gas-phase covalent chemistry is based on traditional solution phase organic chemistry.

The work demonstrated in this dissertation greatly involves gas-phase covalent and non-covalent Schiff base chemistry on peptide and protein ions. The reagent dianion, 4-formyl 1,3-benzene disulfonic acid, has been used to covalently modify unprotonated primary …

The Mechanism And Timescales Of Soil Formation In The Hyper-Arid Atacama Desert, Chile, Fan Wang

Open Access Dissertations

The planetary surfaces that evolve in the near absence of water are strikingly different from surfaces where water is abundant, but their formation is poorly documented. This research is an in-depth exemplary work in the Atacama Desert in northern Chile to understand the soil formation in hyper-arid environments, as an analog for planetary surfaces such as the Mars. In detail, the basic mechanism regarding the source material, timescale, paleo-climatic settings and the role of crypto-biotic crusts have been investigated to constrain the Atacama soil development.

The geochemical, isotopic and mineralogical composition of atmospheric dust deposited along a West-East transect in …

Estimation Of Variation For High-Throughput Molecular Biological Experiments With Small Sample Size, Danni Yu

Open Access Dissertations

Motivation: In the quantification of molecular components, a large variation can affect and even potentially mislead the biological conclusions. Meanwhile, the high-throughput experiments often involve a small number of samples due to the limitation of cost and time. In such cases, the stochastic information may dominate the outcome of an experiment because there may not be enough samples to present the true biological information. It is challenging to distinguish the changes in phenotype from the stochastic variation.

Methods: Since the biological molecules have been quantified with different technologies, different statistical methods are required. Focusing on three types of important high-throughput …

Nitrogen And Potassium Dynamics Of Selected Indiana Soils, Chun Zhao

Open Access Dissertations

Nitrogen (N) is the most limiting essential nutrient for crop growth. Numerous studies have been performed to improve N fertilizer recommendations. Accurate prediction of soil N supply has been found to be one of the most important factors that determine optimum fertilizer N rates. Seven soils collected from various locations across Indiana at four different depths were tested for N mineralization potential. Results showed that laboratory mineralizable N in the top layer (0-15 cm) of the seven soils ranged from 50 to 68 mg N kg-1 soil. In addition, more than 50% of the total mineralizable N was contributed from …

Developing A Framework For Determining The Contribution Of Transportation Project To Sustainable Development, Karim Ahmed Abdel Warith

Open Access Dissertations

In the past few years, stakeholders in the transportation industry have been concerned with sustainability. However, transportation decision makers have had difficulty incorporating sustainability into transportation infrastructure decisions. This is mainly attributed to the vagueness of the term. Incorporating sustainability into transportation decision making has been a desire put forth by engineers for that past 10 years. However, with no apparent method of defining sustainability, designers and decision makers have not been able to fulfill this desire.

This investigation attempts to define sustainability in a comprehensive and quantitative manner. The research proposes a new methodology that relies on the objective …

Development Of Quantitative Ft- Ir Methods For Analyzing The Cure Kinetics Of Epoxy Resins, Sang Ha Son

Open Access Dissertations

Epoxy thermosets are important engineering materials with applications in coating, adhesives, packaging and as structural components in a variety of advanced engineering products. The ultimate performance of polymer critically depends upon the details of the cure chemistry used to produce the thermoset. In order to better understand and monitor the cure chemistry, quantitative analysis of the FT-IR response has been developed for describing the epoxy-amine curing reaction as well as monitoring the hydrogen bonding that occurs in these systems The FT-IR analysis includes (i) quantitative deconvolution of complex peaks into individual spectral contributions, (ii) peak identification via DFT analysis and …

Dependence-Based Source Level Tracing And Replay For Networked Embedded Systems, Man Wang

Open Access Dissertations

Error detection and diagnosis for networked embedded systems remain challenging and tedious due to issues such as a large number of computing entities, hardware resource constraints, and non-deterministic behaviors. The run-time checking is often necessitated by the fact that the static verification fails whenever there exist conditions unknown prior to execution. Complexities in hardware, software and even the operating environments can also defeat the static analysis and simulations. Record-and-replay has long been proposed for distributed systems error diagnosis. Under this method, assertions are inserted in the target program for run-time error detection. At run-time, the violation of any asserted property …

Altered Cholesterol Metabolism In Human Cancers Unraveled By Label-Free Spectroscopic Imaging, Shuhua Yue

Open Access Dissertations

Despite tremendous scientific achievements, cancer remains the second leading cause of death in the United States. Metabolic reprogramming has been increasingly recognized as a core hallmark of cancer. My dissertation work identified novel diagnostic markers and therapeutic targets for human cancers through the study of cholesterol in cancer cells.

Enabled by label-free Raman spectromicroscopy, we performed the first quantitative analysis of lipogenesis at single cell level in human patient cancerous tissues. Our imaging data revealed an unexpected, aberrant accumulation of esterified cholesterol in lipid droplets of high-grade prostate cancer and metastases, but not in normal prostate, benign prostatic hyperplasia, or …

Preparation Of Mesoporous Silica Supported Ruthenium Oxides And The Application And Kinetic Study In The Catalysis Of Water Oxidation, Yang Zhang

Open Access Dissertations

Photo-induced water splitting of water into H2 and O2 has been a major focus in the development of clean and renewable energy. The development of viable and efficient catalysts that facilitates O2 production remains the major challenge in the study of the corresponding half-reaction of water oxidation. There are plenty of metal oxides reported active in the catalysis of water oxidation. However, several important performance bench marks of those materials, such as the non-stoichiometric production of O2, slow reaction rate and/or low quantum efficiency, remain to be improved.

Ruthenium oxide (RuO2) has long been known as one of the most …

The City In Mind: Environmental Literacy And Adaptation In Nineteenth-Century British Literature, Adam Edward Watkins

Open Access Dissertations

This dissertation argues that a new paradigm of selfhood emerged in nineteenth-century British literature, one that recognized the individual will and environmental influence not as antithetical but as dialectical forces in the formation of the self. The concept of an externally negotiated subject challenges both the inward and socially determined conceptions of self that have dominated the relevant criticism. Informed by empiricist, associationist, and evolutionary theories of the mind, the portrayals of subject-formation in this study highlight the radical changes occurring in the human environment in nineteenth-century, which catalyzed the conception of a malleable yet self-forming subject. Along with the …

Solar Cell Temperature Dependent Efficiency And Very High Temperature Efficiency Limits, John Robert Wilcox

Open Access Dissertations

Clean renewable solar energy is and will continue to be a critically important source of electrical energy. Solar energy has the potential of meeting all of the world's energy needs, and has seen substantial growth in recent years. Solar cells can convert sun light directly into electrical energy, and much progress has been made in making them less expensive and more efficient. Solar cells are often characterized and modeled at 25 °C, which is significantly lower than their peak operating temperature. In some thermal concentrating systems, solar cells operate above 300 °C. Since increasing the temperature drastically affects the terminal …

Statistical Models For Gene And Transcripts Quantification And Identification Using Rna-Seq Technology, Han Wu

Open Access Dissertations

RNA-Seq has emerged as a powerful technique for transcriptome study. As much as the improved sensitivity and coverage, RNA-Seq also brings challenges for data analysis. The massive amount of sequence reads data, excessive variability, uncertainties, and bias and noises stemming from multiple sources all make the analysis of RAN-Seq data difficult. Despite much progress, RNA-Seq data analysis still has much room for improvement, especially on the quantification of gene and transcript expression levels. The quantification of gene expression level is a direct inference problem, whereas the quantification of the transcript expression level is an indirect problem, because the label of …

Biophysical Studies Of Cholesterol In Unsaturated Phospholipid Model Membranes, Justin Adam Williams

Open Access Dissertations

Cellular membranes contain a staggering diversity of lipids. The lipids are heterogeneously distributed to create regions, or domains, whose physical properties differ from the bulk membrane and play an essential role in modulating the function of resident proteins. Many basic questions pertaining to the formation of these lateral assemblies remain. This research employs model membranes of well-defined composition to focus on the potential role of polyunsaturated fatty acids (PUFAs) and their interaction with cholesterol (chol) in restructuring the membrane environment. Omega-3 (n-3) PUFAs are the main bioactive components of fish oil, whose consumption alleviates a variety of health problems by …

Predictive Duty Cycling Of Radios And Cameras Using Augmented Sensing In Wireless Camera Networks, Joonhwa Shin

Open Access Dissertations

Energy efficiency dominates practically every aspect of the design of wireless camera networks (WCNs), and duty cycling of radios and cameras is an important tool for achieving high energy efficiencies. However, duty cycling in WCNs is made complex by the camera nodes having to anticipate the arrival of the objects in their field-of-view. What adds to this complexity is the fact that radio duty cycling and camera duty cycling are tightly coupled notions in WCNs.

Abstract In this dissertation, we present a predictive framework to provide camera nodes with an ability to anticipate the arrival of an object in the …

Development Of Isotags For Nmr Based Metabolite Profiling And Applications, Fariba Tayyari

Open Access Dissertations

NMR spectroscopy is a powerful analytical tool for both qualitative and quantitative metabolite profiling analysis. However, accurate quantitative analysis of biological systems especially using one dimensional NMR has been challenging due to signal overlap. In contrast, the enhanced resolution and sensitivity offered by chemoselective isotope tags have enabled new and enhanced methods for detecting hundreds of quantifiable metabolites in biofluids using NMR spectroscopy or mass spectrometry. In this thesis we show improved sensitivity and resolution of NMR experiments imparted by 15N and 13C isotope tagging which enables the accurate analysis of plasma metabolites. To date, isotope tagging has been used …

Automated Failure Explanation Through Execution Comparison, William Nicholas Sumner

Open Access Dissertations

When fixing a bug in software, developers must build an understanding or explanation of the bug and how the bug flows through a program. The effort that developers must put into building this explanation is costly and laborious. Thus, developers need tools that can assist them in explaining the behavior of bugs. Dynamic slicing is one technique that can effectively show how a bug propagates through an execution up to the point where a program fails. However, dynamic slices are large because they do not just explain the bug itself; they include extra information that explains any observed behavior that …

Synthesis Of Novel Isoprenoid Diphosphate Analogs As Chemical Tools To Investigate Protein Geranylgeranylation, Kayla Jo Temple

Open Access Dissertations

Many proteins require prenylation in order to be biologically functional. Some such proteins include the small Ras and Rho GTPase superfamilies, nuclear lamins A and B, and the kinesin motor proteins CENP-E and F. Prenyltransferase (PTase) inhibition is currently being explored as a possible treatment not only for cancer but for a wide variety of other diseases.

Clinical studies revealed that the effectiveness of farnesyltransferase inhibitors (FTIs) to treat Ras-dependent tumors is determined by which isoform of Ras is overactive. Unfortunately the majority of Ras-dependent tumors have a mutation in either the N- or K-Ras isoforms; both of these isoforms …

Implementation Of A Research-Based Lab Module In A High School Chemistry Curriculum: A Study Of Classroom Dynamics, Matthew Pilarz

Open Access Dissertations

Pilarz, Matthew. Ph.D., Purdue University, December 2013. Implementation of a Research-Based Lab Module in a High School Chemistry Curriculum: A Study of Classroom Dynamics. Major Professor: Gabriela C. Weaver.

For this study, a research-based lab module was implemented in two high school chemistry classes for the purpose of examining classroom dynamics throughout the process of students completing the module. A research-based lab module developed for use in undergraduate laboratories by the Center for Authentic Science Practice in Education (CASPiE) was modified and implemented in two high school settings. This module consisted of four phases: Skill Building, Experimental Design, Independent Research, …

Quantifying Crop Yield, Bioenergy Production And Greenhouse Gas Emissions From Cropland And Marginal Land Using A Model-Data Fusion Approach, Zhangcai Qin

Open Access Dissertations

Bioenergy is becoming increasingly attractive to many countries, but has sparked an intensive debate regarding energy, economy, society and environment. Biofuels provide alternative energy to conventional fossil fuels. However, the environmental impact of producing and using biofuel is a major concern to our society. This study is dedicated to quantifying and evaluating biofuel production and potential climate change mitigation due to potential large-scale bioenergy expansion in the conterminous United States, using model-data fusion approaches.

Biofuel made from conventional (e.g., maize (Zea mays L.)) and cellulosic crops (e.g., switchgrass (Panicum virgatum L.) and Miscanthus (Miscanthus × giganteus)) …

Silica Colloidal Crystals As Emerging Materials For The High-Throughput Sizing Of Proteins By Packed Capillary Electrophoresis, Nadine K. Njoya

Open Access Dissertations

Protein heterogeneity is currently one of the leading problems in formulation of therapeutic proteins. The effectiveness of therapeutic proteins is diminished when they exhibit heterogeneity due to aggregates and degradation by-products. Furthermore, guidelines set forth by the FDA require therapeutic proteins to have high stability as well as high purity. With development time on the order of years and costs incurred in the millions, pharmaceutical companies are investing more time in finding fast and efficient ways to screen for protein heterogeneity. Current methods such as native polyacrylamide gel electrophoresis (PAGE), size-exclusion chromatography (SEC) and capillary electrophoresis (CE) are time consuming, …

Utilizing Electron Microscopy And Spectroscopy Methods To Understand Water Structure And Water Doping, Lior Miller

Open Access Dissertations

Water is the second most common element in the universe and the most studied material on earth. Most of the studies concerning water are from the fields of chemistry and biology. Hence, the structure of water molecules and short range order and interactions are well characterized and understood. However, the collective arrangement of water molecules and the long range order are still missing. Understanding of this long range order in water is needed, as it is the key to many water activities.

To fill this gap, this study utilizes a new direct method for characterization of water in the vapor …

Control-Theoretic Decision Support For Mitigation Of Modeled Software Project Cost Overruns, Scott David Miller

Open Access Dissertations

Despite sixty years of practice, the production of software remains an endeavor that is difficult to manage according to a schedule. Control theory studies the ability to influence the dynamical behavior of systems to achieve desired behaviors or eliminate undesired behaviors. In this work, the management problem of software project schedule adherence is re-cast as a problem in control theory.

Below, a modeling framework is proposed for capturing the constraints and dependencies found in the arbitrary organization specific work-flows underlying software production. Combined with proposed models for productivity, defect introduction, and defect detection, the framework completes a method for producing …

Energy Systems Analysis For A Solar Economy, Dharik Sanchan Mallapragada

Open Access Dissertations

The use of solar energy for human needs faces challenges owing to its relatively low energy intensity and intermittent availability, coupled with the constrained availability of renewable carbon and land resources. This study uses systems analysis tools to identify carbon and energy efficient transformations of solar energy for different purposes, including transportation fuels and grid-scale energy storage. These efforts have been complemented with a feasibility analysis of existing fossil-energy and other hybrid pathways.

In an era of limited fossil resources, liquid fuels from sustainably available (SA) biomass could meet the energy needs of the transportation sector. We present a method …