Physical Sciences and Mathematics Commons^™

Development Of A Water Quality Status And Trend Detection Tool*, Ruchir Aggarwal, Valeria Mijares, Margaret W. Gitau

The Summer Undergraduate Research Fellowship (SURF) Symposium

Water Quality Index (WQI) models have been developed since the early 1970s. They present a means by which water quality status and trends can be compared across time and space on the basis of a composite value computed using existing water quality data. There is a need for a tool that can bring the different water quality parameters together and calculate the WQIs so as to facilitate data use in predictive modeling and water quality management. We are developing a software tool that can be used by water quality managers and others with different technical backgrounds to calculate WQI of …

Hazard Assessment Of Meteoroid Impact For The Design Of Lunar Habitats, Herta Paola Montoya, Shirley Dyke, Julio A. Ramirez, Antonio Bobet, H. Jay Melosh, Daniel Gomez

The Summer Undergraduate Research Fellowship (SURF) Symposium

The design of self-sustaining lunar habitats is a challenge primarily due to the Moon’s lack of atmospheric protection and hazardous environment. To assure safe habitats that will lead to further lunar and space exploration, it is necessary to assess the different hazards faced on the Moon such as meteoroid impacts, extreme temperatures, and radiation. In particular, meteoroids pose a risk to lunar structures due to their high frequency of occurrence and hypervelocity impact. Continuous meteoroid impacts can harm structural elements and vital equipment compromising the well-being of lunar inhabitants. This study is focused on the hazard conceptualization and quantification of …

Ocean Wind Speed Measurement Using Wideband Gnss-R Signals, Brandon J. Kozel, Han Zhang, James L. Garrison, Benjamin Nold

The Summer Undergraduate Research Fellowship (SURF) Symposium

The use of Global Navigation Satellite System-Reflectometry (GNSS-R) for remote sensing of ocean wind speeds has been explored for nearly two decades and has become an important passive remote sensing technique for verification of hurricane formation models. To obtain wind speed measurements, reflected GNSS signals are first cross-correlated with locally generated copies to construct delay-doppler maps (DDMs). Through statistical models, DDMs can provide information about the mean-square slope (MSS) of the ocean surface, which is related to wind speed. Previous studies have focused on legacy signals such as GPS L1. However, it is expected that the MSS relationship with ocean …

Purdue Airsense: An Affordable Way To Measure And Study Air Pollution, Stephane Junior Nouafo Wanko, Shadi Tariq Azouz, Ruihang Du, Brandon Boor, Greg Michalski

The Summer Undergraduate Research Fellowship (SURF) Symposium

Air pollution is a major health hazard worldwide, accounting for one-eighth of all deaths in 2012 (World Health Organization). Globally, there is a severe lack of ground-based spatiotemporal monitoring of gaseous and particulate air pollutants, particularly in Africa, South and Central America, and the Middle East. This is in great part due to the high costs of air quality instrumentation that meet accuracy and reliability criteria set by monitoring agencies. The air quality data that is available is often not presented to the public in a user-friendly manner. Taking advantage of recent developments in low-cost sensing technologies, an integrated sensor …

Machine Learning In Xenon1t Analysis, Dillon A. Davis, Rafael F. Lang, Darryl P. Masson

The Summer Undergraduate Research Fellowship (SURF) Symposium

In process of analyzing large amounts of quantitative data, it can be quite time consuming and challenging to uncover populations of interest contained amongst the background data. Therefore, the ability to partially automate the process while gaining additional insight into the interdependencies of key parameters via machine learning seems quite appealing. As of now, the primary means of reviewing the data is by manually plotting data in different parameter spaces to recognize key features, which is slow and error prone. In this experiment, many well-known machine learning algorithms were applied to a dataset to attempt to semi-automatically identify known populations, …

Thermodynamics Of Coherent Structures Near Phase Transitions, Julia M. Meyer, Ivan Christov

The Summer Undergraduate Research Fellowship (SURF) Symposium

Phase transitions within large-scale systems may be modeled by nonlinear stochastic partial differential equations in which system dynamics are captured by appropriate potentials. Coherent structures in these systems evolve randomly through time; thus, statistical behavior of these fields is of greater interest than particular system realizations. The ability to simulate and predict phase transition behavior has many applications, from material behaviors (e.g., crystallographic phase transformations and coherent movement of granular materials) to traffic congestion. Past research focused on deriving solutions to the system probability density function (PDF), which is the ground-state wave function squared. Until recently, the extent to which …

Predicting Locations Of Pollution Sources Using Convolutional Neural Networks, Yiheng Chi, Nickolas D. Winovich, Guang Lin

The Summer Undergraduate Research Fellowship (SURF) Symposium

Pollution is a severe problem today, and the main challenge in water and air pollution controls and eliminations is detecting and locating pollution sources. This research project aims to predict the locations of pollution sources given diffusion information of pollution in the form of array or image data. These predictions are done using machine learning. The relations between time, location, and pollution concentration are first formulated as pollution diffusion equations, which are partial differential equations (PDEs), and then deep convolutional neural networks are built and trained to solve these PDEs. The convolutional neural networks consist of convolutional layers, reLU layers …

Structure-Force Field Generator For Molecular Dynamics Simulations, Carlos M. Patiño, Lorena Alzate, Alejandro Strachan

The Summer Undergraduate Research Fellowship (SURF) Symposium

Atomistic and molecular simulations have become an important research field due to the progress made in computer performance and the necessity of new and improved materials. Despite this, first principle simulations of large molecules are still not possible because the high computational time and resources required. Other methods, such as molecular dynamics, allow the simplification of calculations by defining energy terms to describe multiple atom interactions without compromising accuracy significantly. A group of these energy terms is called a force field, and each force field has its own descriptions and parameters. The objective of this project was to develop a …

Applying Machine Learning To Computational Chemistry: Can We Predict Molecular Properties Faster Without Compromising Accuracy?, Hanjing Xu, Pradeep Gurunathan, Lyudmila Slipchenko

The Summer Undergraduate Research Fellowship (SURF) Symposium

Non-covalent interactions are crucial in analyzing protein folding and structure, function of DNA and RNA, structures of molecular crystals and aggregates, and many other processes in the fields of biology and chemistry. However, it is time and resource consuming to calculate such interactions using quantum-mechanical formulations. Our group has proposed previously that the effective fragment potential (EFP) method could serve as an efficient alternative to solve this problem. However, one of the computational bottlenecks of the EFP method is obtaining parameters for each molecule/fragment in the system, before the actual EFP simulations can be carried out. Here we present a …

Acoustic Signatures Of Habitat Types In The Miombo Woodlands Of Western Tanzania, Sheryl Vanessa Amorocho, Dante Francomano, Kristen M. Bellisario, Ben Gottesman, Bryan C. Pijanowski

The Summer Undergraduate Research Fellowship (SURF) Symposium

The Miombo Woodlands of Tanzania comprise several habitat types that are home to a great number of flora and fauna. Understanding their responses to increasing human disturbance is important for conservation, especially in places where people depend so directly on their local ecosystem services to survive. Soundscapes are a powerful approach to study complex biomes undergoing change. The sounds emitted by soniferous fauna characterize the acoustic profile of the landscapes they inhabit such that habitats with the highest acoustic abundance are considered as the most diverse and possibly more ecologically resilient. However, acoustic variability within similar habitat types may pose …

Parallelization Of Molecular Docking Algorithms Using Cuda For Use In Drug Discovery, Brandon Stewart, Jonathan Fine, Gaurav Chopra Phd

The Summer Undergraduate Research Fellowship (SURF) Symposium

Traditional drug discovery methodology uses a multitude of software packages to design and evaluate new drug-like compounds. While software packages implement a wide variety of methods, the serial (i.e. single core) implementation for many of these algorithms, prohibit large scale docking, such as proteome-wide docking (i.e. thousands of compounds with thousands of proteins). Several docking algorithms can be parallelized, significantly reducing the runtime of the calculations, thus enabling large-scale docking. Implementing algorithms that take advantage of the distributed nature of graphical processing units (GPUs) via the Compute Unified Device Architecture (CUDA) enables us to efficiently implement massively parallel algorithms. Two …

Temperature-Dependent Exciton Dynamics Of Superacid Treatment In Monolayers Of The Metal Dichalcogenide Mos2, Mingwei Zhou, Long Yuan, Jordan Snaider, Libai Huang

The Summer Undergraduate Research Fellowship (SURF) Symposium

To improve optoelectronic semiconductor materials, one of the most efficient research areas is the two-dimensional (2D) transition-metal dichalocogenides (TMDCs). It has been shown that organic nonoxidizing superacid bis(trifluoromethane)sulfonamide (TFSI) treatment of molybdenum disulfide (MoS₂) monolayer could uniformly enhance its photoluminescence by more than two orders of magnitude and also extend the lifetime of excitons. This could greatly improve the efficiency of the solar energy usage, but the mechanism behind it has not been fully understood. Extreme low temperatures (approximately 7K), which slow the surface exciton mobility, were applied to investigate the changes of treated MoS₂ monolayer surfaces. …

How To Enhance Interdisciplinary Competence—Interdisciplinary Problem-Based Learning Versus Interdisciplinary Project-Based Learning, Mirjam Brassler, Jan Dettmers

Interdisciplinary Journal of Problem-Based Learning

Interdisciplinary competence is important in academia for both employability and sustainable development. However, to date, there are no specific interdisciplinary education models and, naturally, no empirical studies to assess them. Since problem-based learning (PBL) and project-based learning (PjBL) are learning approaches that emphasize students’ collaboration, both pedagogies seem suitable to enhance students’ interdisciplinary competence. Based on the principle of constructive alignment and four instructional principles on interdisciplinary learning, this paper proposes that students profit more from interdisciplinary PBL (iPBL) than interdisciplinary PjBL (iPjBL). A pre-post study was conducted with a sample of 95 students participating in iPBL and 183 students …

A Pattern Approach To Examine The Design Space Of Spatiotemporal Visualization, Chen Guo

Department of Computer Graphics Technology Degree Theses

Pattern language has been widely used in the development of visualization systems. This dissertation applies a pattern language approach to explore the design space of spatiotemporal visualization. The study provides a framework for both designers and novices to communicate, develop, evaluate, and share spatiotemporal visualization design on an abstract level. The touchstone of the work is a pattern language consisting of fifteen design patterns and four categories. In order to validate the design patterns, the researcher created two visualization systems with this framework in mind. The first system displayed the daily routine of human beings via a polygon-based visualization. The …

Mathematical Description And Mechanistic Reasoning: A Pathway Toward Stem Integration, Paul J. Weinberg

Journal of Pre-College Engineering Education Research (J-PEER)

Because reasoning about mechanism is critical to disciplined inquiry in science, technology, engineering, and mathematics (STEM) domains, this study focuses on ways to support the development of this form of reasoning. This study attends to how mechanistic reasoning is constituted through mathematical description. This study draws upon Smith’s (2007) characterization of mathematical description of scientific phenomena as ‘‘bootstrapping,’’ where negotiating the relationship between target phenomena and represented relations is fundamental to learning. In addition, the development of mathematical representation presents a viable pathway towards STEM integration. In this study, participants responded to an assessment of mechanistic reasoning while cognitive interviews …

The Introduction Of Informal Cooperative Learning Into Our Programming Laboratories, Guity Ravai, Ludmila Nunes, Ronald Erdei

IMPACT Presentations

Presented at the Women in Engineering ProActive Network (WEPAN) Change Leader Forum: Creating a Mindset for Action in Westminster, CO, USA

Datasets On The Genomic Positions Of The Mll1 Morphemes, The Zfp57 Binding Site, And Zfbs-Morph Overlaps In The Build Mm9 Of The Mouse Genome, Minou Bina, Phillip Wyss, Xiaohui C. Song

Department of Chemistry Faculty Publications

While MLL1 activates gene expression in most tissues, ZFP57 represses transcription. MLL1 selectively interacts with a group of nonmethylated DNA sequences known as the MLL1 morphemes. ZFP57 associates with a methylated hexamer (ZFBS), dispersed in the genomic DNA segments known as Imprinted Control Regions (ICRs) and germline Differentially Methylated Regions (gDMRs), to maintain allele-specific gene repression. We have identified a set of composite DNA elements (ZFBS-Morph overlaps) that provides the sequence context of ZFBS in the canonical ICRs/gDMRs. This report provides tables listing the nucleotide sequences of the MLL1 morphemes and ZFBS-Morph overlaps. The report also offers links to the …

Learning To Identify Depth Edges In Real-World Images With 3d Ground Truth, Krista A. Ehinger, Kevin T. Joseph, Wendy J. Adams, Erich W. Graf, James H. Elder

MODVIS Workshop

No abstract provided.

A Single Shape From Multiple Cues: How Local And Global Information Organizes Shape Inference, Benjamin Kunsberg, Steven W. Zucker

MODVIS Workshop

No abstract provided.

Shape Features Underlying The Perception Of Liquids, Jan Jaap R. Van Assen, Pascal Barla, Roland W. Fleming

MODVIS Workshop

No abstract provided.

Scoring Scene Symmetry, Morteza Rezanejad, John D. Wilder, Sven Dickinson, Allan Jepson, Dirk B. Walther, Kaleem Siddiqi

MODVIS Workshop

No abstract provided.

Can Cone Signals In The Wild Be Predicted From The Past?, David H. Foster, Iván Marín-Franch

MODVIS Workshop

In the natural world, the past is usually a good guide to the future. If light from the sun and sky is blue earlier in the day and yellow now, then it is likely to be more yellow later, as the sun's elevation decreases. But is the light reflected from a scene into the eye as predictable as the light incident upon the scene, especially when lighting changes are not just spectral but include changes in local shadows and mutual reflections? The aim of this work was to test the predictability of cone photoreceptor signals in the wild over the …

Role Of The Cost Of Plasticity In Determining The Features Of Fast Vision In Humans., Maria M. Del Viva Phd, Renato Budinich M. Sc, Laura Palmieri M. Sc, Vladimir S Georgiev Phd, Giovanni Punzi Phd

MODVIS Workshop

No abstract provided.

Large-Scale Discovery Of Visual Features For Object Recognition, Drew Linsley, Sven Eberhardt, Dan Shiebler, Thomas Serre

MODVIS Workshop

A central goal in vision science is to identify features that are important for object and scene recognition. Reverse correlation methods have been used to uncover features important for recognizing faces and other stimuli with low intra-class variability. However, these methods are less successful when applied to natural scenes with variability in their appearance.

To rectify this, we developed Clicktionary, a web-based game for identifying features for recognizing real-world objects. Pairs of participants play together in different roles to identify objects: A “teacher” reveals image regions diagnostic of the object’s category while a “student” tries to recognize the object. Aggregating …

The Introduction Of Informal Cooperative Learning Into Our Programming Laboratories, Guity Ravai, Ronald Erdei, Ludmila Nunes, Sahithya Kodam

IMPACT Presentations

Presentation given at the Midwest SoTL Conference. Discusses the effects of implementing informal cooperative learning techniques in an introductory programming course.

Perception Of Performance Indicators In An Agri-Food Supply Chain, Sweta Chopra, Chad Laux, Edie Schmidt, Prashant Rajan

Computer Information Technology Faculty Publications

Availability of nutritious, safe food, and guaranteed resources for a household to acquire food at all times results in food security. Availability of food at affordable price remains the greater challenge. Currently, the Indian government runs the Public Distribution System to provide commodity subsidies to households. Various government and private stakeholders are involved in making this procurement, storage, processing and distribution process work. The involvement of a large number of stakeholders, each with different interests, increases the complexity and difficulty to identify performance indicators of the supply chain. Current research evaluates the relationship among the participating stakeholders in the public …

Eco-Friendly (Green) Synthesis Of Magnetically Active Gold Nanoclusters, Naveen Reddy Kadasala, Lu Lin, Christopher Gilpin, Alexander Wei

Department of Chemistry Faculty Publications

Au–FexOy composite nanoparticles (NPs) are of great technological interest due to their combined optical and magnetic properties. However, typical syntheses are neither simple nor ecologically friendly, creating a challenging situation for process scale-up. Here we describe conditions for preparing Au–FexOy NPs in aqueous solutions and at ambient temperatures, without resorting to solvents or amphiphilic surfactants with poor sustainability profiles. These magnetic gold nanoclusters (MGNCs) are prepared in practical yields with average sizes slightly below 100 nm, and surface plasmon resonances that extend to near-infrared wavelengths, and sufficient magnetic moment (up to 6 emu g–1) to permit collection within minutes by …

Prediction Of Local Quality Of Protein Structure Models Considering Spatial Neighbors In Graphical Models., Woong Hee Shin, Xuejiao Kang, Jian Zhang, Daisuke Kihara

Department of Biological Sciences Faculty Publications

Protein tertiary structure prediction methods have matured in recent years. However, some proteins defy accurate prediction due to factors such as inadequate template structures. While existing model quality assessment methods predict global model quality relatively well, there is substantial room for improvement in local quality assessment, i.e. assessment of the error at each residue position in a model. Local quality is a very important information for practical applications of structure models such as interpreting/designing site-directed mutagenesis of proteins. We have developed a novel local quality assessment method for protein tertiary structure models. The method, named Graph-based Model Quality assessment method …

‘‘Can I Drop It This Time?’’ Gender And Collaborative Group Dynamics In An Engineering Design-Based Afterschool Program, Jessica Schnittka, Christine Schnittka

Journal of Pre-College Engineering Education Research (J-PEER)

The 21st century has brought an increasing demand for expertise in science, technology, engineering, and math (STEM). Although strides have been made towards increasing gender diversity in several of these disciplines, engineering remains primarily male dominated. In response, the U.S. educational system has attempted to make engineering curriculum more engaging, informative, and welcoming to girls. Specifically, project-based and design-based learning pedagogies promise to make engineering interesting and accessible for girls while enculturating them into the world of engineering and scientific inquiry. Outcomes for girls learning in these contexts have been mixed. The purpose of this study was to explore how …

Efficient Processing Of Similarity Queries With Applications, Mingjie Tang

Open Access Dissertations

Today, a myriad of data sources, from the Internet to business operations to scientific instruments, produce large and different types of data. Many application scenarios, e.g., marketing analysis, sensor networks, and medical and biological applications, call for identifying and processing similarities in "big" data. As a result, it is imperative to develop new similarity query processing approaches and systems that scale from low dimensional data to high dimensional data, from single machine to clusters of hundreds of machines, and from disk-based to memory-based processing. This dissertation introduces and studies several similarity-aware query operators, analyzes and optimizes their performance.

The first …