Physical Sciences and Mathematics Commons^™

New Paradigm Of Forestry And Grassland Research Driven By Artificial Intelligence, Zhang Huaiqing, Jiaojun Zhu, Yang Liu, Tingdong Yang, Tian Gao, Jing Zhang, Xueyan Zhu, Yan Chen, Xian Jiang, Zeyu Cui, Jingwei Tan, Kexin Lei

Bulletin of Chinese Academy of Sciences (Chinese Version)

Addressing the current limitations in forestry and grassland research, particularly in cross-scale system cognition, complex process mechanism representation, and multi-scenario simulation, this study proposes an artificial intelligence-driven paradigm reconstruction framework, to shift the research model from experience-oriented approaches toward data- and intelligence-driven integration. On this basis, the study systematically establishes a multidimensional mapping between artificial intelligence and forestry and grassland research across research objects, processes, and objectives, and clarifies their intrinsic coupling mechanisms and technical pathways. Furthermore, it develops a foundational capability system to support the new paradigm from four key dimensions: data, computing power, models, and applications. By examining …

Understanding And Foresight On Construction Of Foundation Model Industry Innovation Ecosystem, Liu Liu, Chunhui Jia, Yangfan Han, Qiqi Zhang, Jialin Li, Dayuan Li, Junpu Wang

Bulletin of Chinese Academy of Sciences (Chinese Version)

Foundation models are a key vehicle driving artificial intelligence toward general intelligence, and their industrialization urgently requires support from a systematic and collaborative innovation ecosystem. This study focuses on the construction of the foundation model industry innovation ecosystem. It first reviews the frontier progress and identifies its essence as a complex innovation network featuring the three-dimensional synergy of technological, organizational, and industrial architectures, and then analyzes the architecture along the upstream, midstream, and downstream of the industrial chain: the upstream supports computing power and data, the midstream undertakes algorithmic innovation and platform services, and the downstream realizes multi-scenario value transformation. …

Ai-Powered Knowledge Engines As Research Infrastructure For Systematic Knowledge Discovery, Gary Welz

Publications and Research

This paper proposes knowledge engines as a framework for understanding how intelligent systems — both human and artificial — systematically discover, integrate, and generate knowledge. We argue that history’s greatest scientific minds functioned as knowledge engines, processing information through iterative cycles of ingestion, analysis, synthesis, and communication, guided by curiosity and willingness to challenge established beliefs.

We propose a taxonomy of nine integrated capabilities — ingestion, digestion, analysis, calculation, comparison, connection, association, analogy, and multimodal communication — that any serious knowledge engine must combine systematically. The argument is deliberately integrative: achieving ambitious research goals requires orchestrating all nine capabilities within …

Building Ai-Native Innovation System To Drive Transformation And Innovation In Research Organization And Management Models, Hong Xuehai

Bulletin of Chinese Academy of Sciences (Chinese Version)

Artificial intelligence (AI) is profoundly reshaping research paradigms. This study aims to analyze the intrinsic mechanisms through which AI empowers scientific research and its impact on the organizational management models of research. By summarizing what AI can and cannot do in empowering research, it reveals the current effectiveness and capability boundaries of AI in this domain. Based on the extraction of common core conditions for AI-empowered research and the deconstruction of typical cases of AI-enabled research organizational models, this study analyzes the differences between the organizational management model of AI-empowered research and traditional research organizational models. Furthermore, it proposes three …

Insights And Implications Of Ai For Science Strategies Of Major Science And Technology Powers, Zhang Zhiqiang, Yawei Shao

Bulletin of Chinese Academy of Sciences (Chinese Version)

Artificial intelligence (AI) is transitioning from a research aid to a scientific discovery agent. The new paradigm of “AI + Science” (AI for Science, AI4S) – the intelligent science paradigm (or the fifth paradigm of science) – characterized by the deep integration of artificial intelligence into the entire process of scientific discovery, is rapidly emerging and becoming a “new agent” for intelligent and autonomous execution of scientific discovery and technological invention as well as a key force in reshaping the human knowledge production system and the global landscape of technological competition. The intervention of AI in the field of knowledge …

Can An Ai System Be Creative? A Critical Perspective From Art And Engineering, Ivan Magrin-Chagnolleau

Presidential Fellows Articles and Research

This paper examines the question of whether artificial intelligence (AI) systems can be creative, approached from the dual perspective of a researcher trained in electrical engineering, pattern recognition, machine learning, and neural networks, who has also spent most of his life engaged in the arts as actor, stage and film director, writer, composer, and visual artist, and in philosophy. Drawing on Margaret Boden’s foundational framework — both her three properties of creativity (novelty, surprise, and value) and her three types of creative processes (combinatorial, exploratory, and transformational) — the paper argues that AI systems are structurally incapable of creativity in …

Compressed Cinema As A Study In Llm Latent Spaces, Mallen Clifton

ELO (un)supervised 2026

In his article “Spec Acts” (2021), Matthew Kirschenbaum analyzes the AI-generated novel 1 the Road to develop his titular concept of the spec act, “the future in its multitudes collapsing into an actionable present.” With the proliferation of texts produced by generative AI and subsequent critical analyses of them, one element in particular calls for further theorization: “the future in its multitudes,” or more directly, the latent space. This echoes arguments by critics such as Antonio Somaini, who offered his own “Theory of Latent Spaces” last year. However, where Somaini’s attention is towards visual culture, I turn mine to the …

Observations On Recurrent Loss In The Neural Network Model Of A Partial Differential Equation: The Advection–Diffusion Equation, Jonah A. Reeger

Faculty Publications

A growing body of literature has been leveraging techniques of machine learning (ML) to build novel approaches to approximating the solutions to partial differential equations. Noticeably absent from the literature is a systematic exploration of the stability of the solutions generated by these ML approaches. Here, a recurrent network is introduced that matches precisely the evaluation of a multi-step method paired with a collocation method for approximating spatial derivatives in the advection–diffusion equation. This allows for two things: (1) the use of traditional tools for analyzing the stability of a numerical method for solving PDEs and (2) bringing to bear …

Assessing Flaws In Captcha Security Through Progress In Ai, Jaydon Stanislowski

Scholarly Horizons: University of Minnesota, Morris Undergraduate Journal

Protecting the internet from the threat of malicious bot activity is an important problem as AI tools become more powerful and commonplace over time. To that end, security measures are employed across websites in the form of CAPTCHAs, short challenges designed to identify and block fake web traffic. Yet, they become less effective over time as AI becomes more powerful, and thus more capable of solving them. This paper examines recent research on the threat to CAPTCHA security posed by current AI models and how this security can be reinforced over time, focusing primarily on Google’s reCAPTCHA v3.

Llm-As-A-Judge For Infection Prevention And Control And Antimicrobial Resistance Impact: Comparing Three Main Llms Vs. Human Experts' Assessment, Marcello Di Pumpo, Leonardo Villani, Maria Rosaria Gualano, Danilo Buonsenso, Francesca Raffaelli, Daniele Donà, Patrizia Laurenti, Vittorio Maio, Stefania Boccia, Walter Ricciardi

College of Population Health Faculty Papers

BACKGROUND: Large language models (LLMs) are increasingly used to generate health information, yet their reliability as evaluators remains unclear. This study investigated the feasibility of an LLM-as-a-judge methodology in the context of infection prevention and antimicrobial resistance (AMR), comparing automated ratings with human expert benchmarks.

METHODS: We performed a secondary analysis of an expert-annotated dataset of health messages. Three leading LLMs (ChatGPT, Claude, Gemini) independently evaluated the same messages using an adapted DISCERN tool across five domains: information reliability, quality, AMR impact, persuasiveness, and overall score. We utilized descriptive statistics, intra-rater reliability tests, and mixed-effects ordinal regression to analyze divergence …

Decoding The Allosteric Grammar Of Protein Kinases: A Dual-Stream Framework Integrating Protein Language Models And Energy Landscape Frustration Analysis, Will Gatlin, Max Ludwick, Lucas Turano, Brandon Foley, Kamila Riedlova, Vít Škrhák, Marian Novotný, David Hoksza, Gennady M. Verkhivker

Mathematics, Physics, and Computer Science Faculty Articles and Research

The spatial and energetic encoding of allosteric regulatory sites remains a major challenge in structural biology, frequently representing a “blind spot” for sequence-based artificial intelligence (AI) models. We present a protein language model (PLM)-guided approach complemented by the energy landscape frustration analysis as a dual-stream framework to investigate the relationship between AI prediction of binding sites and biophysical organization of regulatory pockets across the human kinome. By probing a fine-tuned residue-level PLM classifier across 453 kinase structures, a clear performance gap is discovered between highly predictable orthosteric pockets (Types I, I.5, and II) and poorly resolved distal allosteric sites (Type …

Expert Interview: "The Mirror Of Ai" In The Domain Of Scientifc Information Research, Taitian Mao, Yulai Bao, Jianxiang Wei, Peng Wu, Chuanming Yu, Gan Tang, Dongyan Wei, Yifei Ma, Wei Wang, Yu Ma

Journal of Scientific Information Research

Professor Mao Taitian and colleagues argues elucidates the adaptation logic, practical pathways, and prerequisites of intelligent agents to empower the high-quality development of scientific information. Professor Bao Yulai and colleagues advocate that integrating the perceptual elasticity of domain-specific large models with the cognitive rigidity of ontology can establish a new paradigm for intelligence services in complex scenarios. The synergy between the two can not only expand the theoretical boundaries of information science and serve national strategies, but also advance intelligence services from assisted analysis to intelligent decision-making. Professor Wei Jianxiang and colleagues point out that generative artificial intelligence has triggered …

Religious Bias In Llms Is Significantly Understudied, Sheryl Carty, Nancy Fulda, Walter Reade

Faculty Publications

In the earlier years of development of LLMs, it was relatively easy to prompt an LLM to respond with toxic or biased statements about religion. Subsequent improvements in frontier models addressed many of the issues of bias and toxicity in general, including against religion. At the same time, the adoption and usage of these models has grown exponentially. Small and implicit biases, therefore, have a magnified overall impact. In this paper, we (1) briefly review previous efforts to measure religious bias in LLMs, (2) show, by reviewing over 12,000 papers dealing with bias in LLMs, that religious bias has been …

Heterogeneous Graph-Augmented Contrastive Learning For Extreme Multi-Class Fiqh Classification, Ali A. Jalil

Al-Bahir

• Background/Introduction: Fine-grained text classification in the field of Islamic Jurisprudence (Fiqh) is difficult because of the structural interdependence of the legal concepts and the extremely multi-class long-tail data distribution (667 classes with 5,979 samples, 52.2% of which contain less than 5 samples). The main problem with traditional flat classifiers is that they assume that target classes are independent and orthogonal output neurons which discards very important relational semantics.
• Objectives: This paper seeks to remediate this extreme imbalance and maintain structural taxonomy by modeling the structural space of classification label space itself as an object to be learned, while giving a …

Semantic Context Improvisational Retrieval-Augmented Generation For Empathic Conversational Ai, Sharjeel Tahir, Judith Johnson, Jumana Abu-Khalaf, Syed Afaq Ali Shah

Research outputs 2022 to 2026

A fundamental limitation of modern conversational AI is its limited capacity to demonstrate sustained empathy in long-form interactions. We propose SCIRAG (Semantic Context Improvisational Retrieval-Augmented Generation), a feedback-driven retrieval framework for adaptive empathic dialogue. It employs a dual-loop retrieval framework, iteratively optimizing a static counseling dataset through user metadata and feedback memory refinement. To enhance contextual alignment, we deploy retrieval adaptation, enabling the model to retain and leverage past conversational cues based on user preferences. When integrated with Mixtral-8x7B, SCIRAG improves human-rated empathic understanding by +1.26 points and empathic response by +1.00 point on the RoPE scale, while increasing acceptability …

A Dataset Of Agentic Ai Coding Tool Configurations, Matthias Galster, Seyedmoein Mohsenimofidi, Levi Böhme, Jai Lal Lulla, Muhammad Auwal Abubakar, Christoph Treude, Sebastian Baltes

Research Collection School Of Computing and Information Systems

Agentic AI coding tools such as Claude Code and OpenAI Codex execute multi-step coding tasks with limited human oversight. To steer these tools, developers create repository-level configuration artifacts (e.g., Markdown files) for configuration mechanisms such as Context Files, Skills, Rules, and Hooks. There is no curated dataset yet that captures these configurations at scale. This dataset, collected from open-source GitHub repositories, fills that gap. We selected 40,585 actively maintained repositories through metadata filtering, classified them using GPT-5.2 to identify 36,710 as belonging to engineered software projects, and systematically detected configuration artifacts in these repositories. The dataset covers 4,738 repositories across …

Air: Improving Agent Safety Through Incident Response, Zibo Xiao, Jun Sun, Junjie Chen

Research Collection School Of Computing and Information Systems

Large Language Model (LLM) agents are increasingly deployed in practice across a wide range of autonomous applications. Yet current safety mechanisms for LLM agents focus almost exclusively on preventing failures in advance, providing limited capabilities for responding to, containing, or recovering from incidents after they inevitably arise. In this work, we introduce AIR, the first incident response framework for LLM agent systems. AIR defines a domain-specific language for managing the incident response lifecycle autonomously in LLM agent systems, and integrates it into the agent's execution loop to (1) detect incidents via semantic checks grounded in the current environment state and …

A Machine-Learning-Based Systematic Framework For Modeling Compression And Recompression Indices For Florida Soils, Michael Morales

Doctoral Dissertations and Master's Theses

This thesis develops a machine-learning framework for estimating the compression index and the recompression index of Florida soils from routinely measured index properties, and reports two studies that build it. Consolidation settlement design requires both indices, and both are obtained from the incremental-loading oedometer test, which occupies a specimen for one to two weeks; the index tests that accompany it are complete within hours. Empirical correlations have filled that interval since the 1950s, but their coefficients are calibrated on specific soil populations and transfer poorly between regions. The first study analyzes 376 consolidation tests compiled for the Florida Department of …

Online Ppo-Based Multi-Hop Task Offloading Strategy For Vehicular Edge Computing, Wenzhu Zhang, Yuewei Bian, Fuli Xiong, Siqi Cai

Journal of System Simulation

Abstract: To address the problems of frequent communication link interruptions caused by dynamic network topologies and the sharp increase in computational complexity triggered by high-dimensional decision spaces in the vehicular edge computing (VEC) environment, a multi-hop task offloading strategy for VEC based on an online PPO algorithm was proposed. A multi-hop task offloading optimization model simultaneously considering link effective time, transmission rate, and computing resource constraints was constructed; a multi-hop A* path search algorithm integrating link stability and end-to-end delay was designed; an online offloading decision framework based on PPO was proposed, which transformed the 0-1 mixed integer nonlinear programming …

Improved Pbs Algorithm For Multi-Agent Path Planning Based On Conflict Guidance And Punishment Mechanism, Jinbao Zhang, Jianlin Mao, Chengze Qian, Guimi Sun, Kaixin Tong

Journal of System Simulation

Abstract: To address the bottleneck in which the priority-based search (priority-based search, PBS) algorithm for multi-agent path planning easily falls into conflict loops and generates invalid node expansions in complex scenarios, an improved algorithm based on conflict guidance and a punishment mechanism (improved PBS multi-agent path finding algorithm based on conflict guidance and punishment mechanism, CGP-PBS) was proposed. A conflict-guided node expansion mechanism was constructed; in high-level search, it comprehensively evaluated path cost and the number of conflicts, preferentially expanded child nodes with high potential for conflict resolution, and delayed the expansion of high-conflict nodes, thereby effectively compressing the search …

Research On Temporal Action Localization Methods For Cross-Modal Understanding, Jinwei Li, Xiaoyang Liu, Rusheng Ju

Journal of System Simulation

Abstract: To address the problems of insufficient localization accuracy and high model complexity in the temporal action localization (TAL) task for video-text cross-modal understanding, an anchor-free action transformer (AFAT) model was proposed. Based on the anchor-free framework, the local self-attention mechanism of Transformer was introduced to enhance the global modeling capability of temporal features. A multi-scale feature pyramid structure was combined to strengthen the representation of actions with different durations, and a lightweight predictor was adopted to reduce computational redundancy. Experimental results show that the average precision of this model on the THUMOS14 dataset is significantly improved compared with the …

Solving Rubik's Cube By Using Artificial Intelligence, Polat Coban, Seth Reed

Systems Manuals - 2026

This document will detail a proposal to build a Rubik’s cube simulator, and a Rubik’s cube solver. It is broken into several sections which in turn are broken into subsections.

Smart Atm, Majid Hakeem

Systems Manuals - 2026

The Smart ATM is a new system that goal is to create a new experience for ATMs users by creating a different way of using the ATM. It would protect users from germs and bacteria. Instead of using buttons and touch screens, the main input for this system will be the motion sensor. To specify, the system uses Microsoft Kinect, which is the motion sensor for the Xbox One.

This document is a user guide, which is intended to give assistance to users for using the Smart ATM. This document contains an application overview, list of user requirements, the design …

Configuring Agentic Ai Coding Tools: An Exploratory Study, Matthias Galster, Seyedmoein Mohsenimofidi, Jai Lal Lulla, Muhammad Auwal Abubakar, Christoph Treude, Sebastian Baltes

Research Collection School Of Computing and Information Systems

Agentic AI coding tools increasingly automate software development tasks. Developers can configure these tools through versioned repository-level artifacts such as Markdown and JSON files. We present a systematic analysis of configuration mechanisms for agentic AI coding tools, covering Claude Code, GitHub Copilot, Cursor, Gemini, and Codex. We identify eight configuration mechanisms spanning from static context to executable and external integrations and, in an empirical study of 2,853 GitHub repositories, examine whether and how they are adopted, with a detailed analysis of Context Files, Skills, and Subagents. First, Context Files dominate the configuration landscape and are often the sole mechanism in …

Tranx-Adapter: Bridging Artifacts And Semantics Within Mllms For Robust Ai-Generated Image Detection, Wenbin Wang, Yuge Huang, Jianqing Xu, Yue Yu, Jiangtao Yan, Shouhong Ding, Pan Zhou, Yong Luo

Research Collection School Of Computing and Information Systems

Rapid advances in AI-generated image (AIGI) technology enable highly realistic synthesis, threatening public information integrity and security. Recent studies have demonstrated that incorporating texture-level artifact features alongside semantic features into multimodal large language models (MLLMs) can enhance their AIGI detection capability. However, our preliminary analyses reveal that artifact features exhibit high intra-feature similarity, leading to an almost uniform attention map after the softmax operation. This phenomenon causes attention dilution, thereby hindering effective fusion between semantic and artifact features. To overcome this limitation, we propose a lightweight fusion adapter, TranX-Adapter, which integrates a Task-aware Optimal-Transport Fusion that leverages the Jensen-Shannon divergence …

Towards Uniformity And Alignment For Multimodal Representation Learning, Wenzhe Yin, Pan Zhou, Zehao Xiao, Jie Liu, Shujian Yu, Jan-Jakob Sonke, Efstratios Gavves

Research Collection School Of Computing and Information Systems

Multimodal representation learning aims to construct a shared embedding space in which heterogeneous modalities are semantically aligned. Despite strong empirical results, InfoNCE-based objectives introduce inherent conflicts that yield distribution gaps across modalities. In this work, we identify two conflicts in the multimodal regime, both exacerbated as the number of modalities increases: (i) an alignment–uniformity conflict, whereby the repulsion of uniformity undermines pairwise alignment, and (ii) an intra-alignment conflict, where aligning multiple modalities induces competing alignment directions. To address these issues, we propose a principled decoupling of alignment and uniformity for multimodal representations, providing a conflict-free recipe for multimodal learning that …

Rendering Data Unlearnable By Exploiting Llm Alignment Mechanisms, Ruihan Zhang, Jun Sun

Research Collection School Of Computing and Information Systems

Large language models (LLMs) are increasingly trained on massive, heterogeneous text corpora, raising serious concerns about the unauthorised use of proprietary or personal data during model training. In this work, we address the problem of data protection against unwanted model learning in a realistic blackbox setting. We propose Disclaimer Injection, a novel data-level defence that renders text unlearnable to LLMs. Rather than relying on model-side controls or explicit data removal, our approach exploits the models’ own alignment mechanisms: injecting carefully designed alignment-triggers to prevent effective learning. Through layer-wise analysis, we find that finetuning on such protected data induces persistent activation …

Resilience Modeling Method For Combat System-Of-Systems Based On Hypernetwork And Game Theory, Yuxian Duan, Hanqiang Deng, Jiarui Zhang, Jian Huang, Shijia Zhang

Journal of System Simulation

Abstract: In view of the difficulties in dynamic reconfiguration and resilience evaluation faced by modern combat system-of-systems in a highly adversarial environment, and the deficiencies of existing studies in depicting high-order interaction relationships and cluster evolution mechanisms, this paper proposed a resilience modeling method for combat system-of-systems integrating hypernetwork and game theory, aiming to analyze the resilience mechanism of the system-of-systems in all dimensions from micro, mesoscopic, to macro levels. At the micro level, a high-order motif structure was introduced to represent the complex interaction modes among combat units, which overcame the information loss of traditional binary relationships in depicting …

Simulation Study Of Elevator Group Control Scheduling Based On Real-Time Occupancy Perception, Yiyong Han, Shiyu Wang, Yang Ye, Zhen Zhang, Fengque Pei, Minghai Yuan

Journal of System Simulation

Abstract: To address the conflict between car space allocation and peak passenger flow response efficiency in elevator group control scheduling, a multi-objective scheduling method based on proximal policy optimization (PPO) with real-time occupancy perception was proposed. A simulation environment considering car capacity constraints was constructed, and a reward-penalty mechanism with average passenger waiting time, system energy consumption, and car congestion as optimization objectives was designed. Based on this, state and action spaces were defined to form a PPO-based scheduling framework; a simulation platform integrating traffic flow visualization, policy scheduling, and performance evaluation was developed. Simulation results show that this method …

Adaptive Spatiotemporal Graph Neural Network-Based Net Load Forecasting For Residential Areas, Yongqi Yang, Cong Wang, Hongli Zhang, Ping Ma, Yue Meng, Tianhao Zhou

Journal of System Simulation

Abstract: To address the issue that traditional residential overall power load forecasting methods fail to fully consider the differences in users' electricity consumption habits, making it difficult to improve prediction accuracy, a residential net load forecasting method combining representation learning clustering and an AGCN-Transformer was proposed. The representation learning method was utilized to fully extract the latent features of users' net load data, and users were divided into different groups based on the similarity of electricity consumption behaviors; the net load data of the same group were aggregated, and a graph structure suitable for this task was constructed by comprehensively …