Medicine and Health Sciences Commons^™

Impact Of Covid-19 On The Diversity Of The Construction Workforce, Anil Baral, Yunping Liang, Mingshu Li, Marilyn Gonzalez, Mohsen Shahandashti, Baabak Ashuri

Durham School of Architectural Engineering and Construction: Faculty Publications

Construction industry employment has been severely impacted by the coronavirus (COVID-19) pandemic. This paper examines the impact of the COVID-19 pandemic in the US construction labor market. This study contributes to the state of knowledge by (1) revealing how the COVID-19 pandemic impacted construction employment across different demographic groups and geographic regions in the US, and (2) identifying vulnerable demographic groups (e.g., minorities, women, older workers) in the construction workforce that are disproportionally impacted by the pandemic. Employment data from the Current Population Survey and Current Employment Statistics (CES) programs, which are administered by the Bureau of Labor Statistics, are …

Quality Parameters Of Wet And Dry Aged Beef Loins From Cattle Fed High Doses Of Vitamin E, David M. Velazco, Joe A. Sonderman, Nicolas J. Herrera, Chris Calkins

Nebraska Beef Cattle Reports

The objective of this experiment was to determine if dietary supplementation of high doses of vitamin E (alpha-tocopherol; 2,200 IU per day for 100 days) can impact quality attributes of wet and dry-aged beef strip loins. Steaks from beef cattle supplemented with high doses of vitamin E exhibited less lipid oxidation after wet or dry aging, took longer time to discolor during retail display, and sustained redder color for a longer period under retail display conditions compared to controls. Free amino acids related to positive beef flavor attributes were higher for dry-aged loins compared to traditional wet aged samples loins. …

Beef Quality And Oxidative Stability From Cattle Fed High Levels Of Vitamin E, Nicolas J. Herrera, Joe A. Sonderman, David M. Velazco, Chris Calkins

Nebraska Beef Cattle Reports

Meat color is a major factor for consumer meat purchasing decisions. Aging beef, which can improve tenderness, has been shown to accelerate discoloration in fresh beef, shortening retail display time, and generating negative flavor attributes. The objective of this study was to evaluate supplementing cattle high levels (2,200 International Units/ day) of Vitamin E to sustain meat quality during prolonged retail display in beef strip loins after 2 or 14 days aging compared to commercially-produced loins selected as controls. Results showed a treatment x age effect for Warner-Bratzler shear force and free calcium content, primarily due to aging. A dietary …

Effect Of Feeding Cars On Digestibility And Fatty Acid Flow In Finishing Cattle Diets, John C. Gibbons, Mitchell M. Norman, Tyler J. Spore, Hannah C. Wilson, Kylie Butterfield, Andea K. Watson, Galen E. Erickson, Jonathan W. Wilson

Nebraska Beef Cattle Reports

An experiment was conducted to evaluate the impact of a liquid feed, Condensed Algal Residue Solubles (CARS) on diet digestibility and fatty acid flow to the small intestine. Three treatments included CARS at 0, 2.5, and 5% of the diet dry matter, replacing steam-flaked corn. The base diet included 73, 70.5, or 68% steam flaked corn, 15% dried distillers grains plus solubles, 8% alfalfa haylage, and 4% supplement. Inclusion of CARS in the diet did not affect dry matter or organic matter intake or digestibility of dry matter, organic matter or neutral detergent fiber. Amount of fatty acid flowing to …

Evaluation Of Green Grass On Nutrient Digestibility And Fatty Acid Flow In Cattle Finishing Diets, Aksel R. Wiseman, Tyler J. Spore, Mitchell M. Norman, Hannah C. Wilson, J. C. Macdonald, Andrea K. Watson, Galen E. Erickson

Nebraska Beef Cattle Reports

Six ruminally and duodenally cannulated steers were utilized in a 3 × 3 replicated Latin square experiment to test 0, 15, and 30% dietary inclusion of Green Grass (Sunseo Omega 3; Chungcheong Duk-Do, South Korea), a feed comprised of sesame meal, giant kelp, cassava, and sorghum (not currently approved to be fed in the US). Dry matter and fiber intake increased linearly with increased Green Grass inclusion. Dry matter and organic matter digestibility were not affected by Green Grass inclusion. Concentration of saturated fatty acids at the duodenum were similar for Green Grass 0 and Green Grass 15 with a …

Effect Of Biochar As A Feedlot Pen Surface Amendment On Manure Nutrient Capture, J. L. Sperber, Braden C. Troyer, Mitchell M. Norman, Levi J. Mcphillips, Heather Nobert, Andrea K. Watson, Galen E. Erickson

Nebraska Beef Cattle Reports

Two mass balance experiments were conducted during winter and summer seasons to evaluate the effect of spreading biochar on the feedlot pen surface on manure nutrient retention. The winter experiment (Dec to June) evaluated three treatments including biochar spread to pen surface (approximately 54 lb of biochar per steer), hydrated lime spread to pen surface (cooperation with UNL Environmental Engineering; approximately 68 lb per steer) and negative control (no treatment applied). The summer experiment (June to Nov) evaluated biochar treatment (approximately 68 lb of biochar per steer) against negative control. Biochar utilized in winter and summer was unprocessed and sourced …

Interaction Of Sweet Bran Inclusion And Corn Processing Method In Beef Finishing Diets, Rebecca L. Sjostrand, Levi J. Mcphillips, Braden C. Troyer, Maggie Youngers, Rick Stock, J. C. Macdonald, Galen E. Erickson

Nebraska Beef Cattle Reports

The effects of corn processing method and Sweet Bran concentration on finishing cattle performance and carcass characteristics were evaluated in steam-flaked corn or a blend of high-moisture and dry-rolled corn-based diets. Sweet Bran was included at 0, 20, or 40% of diet dry matter. When cattle were fed 0% Sweet Bran, feeding steam-flaked corn resulted in a 11.7% improvement in feed conversion and heavier hot-carcass weight compared to feeding high-moisture/ dry-rolled corn. As Sweet Bran increased in the diet, there was a linear improvement in feed conversion for high-moisture/dry-rolled corn-fed steers and no change in feed conversion for steam-flaked corn-fed …

Effect Of Rapeseed Inclusion In Late-Summer Planted Oat Pasture On Growing Performance Of Beef Steers, Devin A. Jakub, Hannah E. Riley, Kristin E. Hales, Steven D. Shackelford, Harvey C. Freetly, M. E. Drewnoski

Nebraska Beef Cattle Reports

An oat monoculture was planted in late summer at 100 lb/ac and compared to oats planted at 50 lb/ac with rapeseed included at 3 lb/ac. Seed cost of the oat monoculture ($20/ac) was greater than the mix ($15/ac). Initial forage yield was not affected by the inclusion of rapeseed with fall oat. Calf gain was significantly greater and cost of gain was significantly decreased when rapeseed was included due to the combination of greater gains and lesser seed cost. Including rapeseed in late summer planted oats may be beneficial for producers who want to graze growing calves in the fall.

Interaction Of Urea With Frequency And Amount Of Distillers Grains Supplementation On Growing Steer Rumen Digestion Parameters, Haley F. Linder, Joshua E. Sebade, Tyler J. Spore, M. E. Drewnoski, J. C. Macdonald

Nebraska Beef Cattle Reports

Ruminally cannulated steers were used in 8 × 6 row-column design with 8 animals and 6 periods. Treatment design was a 2 × 2 × 2 factorial, with factors including amount of supplementation, frequency of supplementation, and inclusion of urea. Hay dry matter intake was reduced by increased amount of supplementation and by decreased frequency of supplementation. Total VFA concentration did not differ among treatments. Rumen ammonia-N concentration was impacted by an interaction of amount of supplementation and inclusion of urea but there was no effect of supplementation frequency. In situ NDF disappearance did not differ between daily and alternate …

Comparison Of Partially Confined And Traditional Cow-Calf Systems, Zac E. Carlson, Levi J. Mcphillips, Galen E. Erickson, M. E. Drewnoski, J. C. Macdonald

Nebraska Beef Cattle Reports

Production of cow-calf pairs and grow/finish performance of calves from a partially-confined, fall-calving, intensive cow-calf system were compared to a traditional, spring-calving, extensive cow-calf system. Body condition was lower at breeding and weaning for the fall-calving alternative system compared to the traditional, spring-calving system. Conception, calving, and weaning rates were not different among treatments. Weaning weights were lower for the fall-calving alternative system than traditional, spring-calving system. Following weaning, calves were grown for 117 d and then subsequently finished to the same target fatness for both systems. In the grower phase, gain was greater and feed conversion improved for the …

Experimental Elucidation Of The Life Cycle Of Drepanocephalus Spathans (Digenea: Echinostomatidae) With Notes On The Morphological Plasticity Of D. Spathans In The United States, Neely R. Alberson, Thomas G. Rosser, Tommy King, Ethan T. Woodyard, Lester Khoo, Wes A. Baumgartner, Daviod J. Wise, Linda M. Pote, Fred L. Cunningham, Matt J. Griffin

United States Department of Agriculture Wildlife Services: Staff Publications

The echinostomatid Drepanocephalus spathans (syn. Drepanocephalus auritus) parasitizes the doublecrested cormorant Phalacrocorax auritus. In North America, the marsh rams-horn snail Planorbella trivolvis and ghost rams-horn snail Biomphalaria havanensis serve as snail intermediate hosts, both of which inhabit catfish aquaculture ponds in the southeastern United States. Studies have demonstrated D. spathans exposure can be lethal to juvenile channel catfish Ictalurus punctatus. Two studies were undertaken to elucidate the life cycle of D. spathans to establish a developmental time line. In both studies, D. spathans cercariae collected from naturally infected P. trivolvis individuals were used to infect channel catfish …

Scavenging Vs Hunting Affects Behavioral Traits Of An Opportunistic Carnivore, Mitchell A. Parsons, Andrew Garcia, Julie K. Young

United States Department of Agriculture Wildlife Services: Staff Publications

Background. Human-induced changes to ecosystems transform the availability of resources to predators, including altering prey populations and increasing access to anthropogenic foods. Opportunistic predators are likely to respond to altered food resources by changing the proportion of food they hunt versus scavenge. These shifts in foraging behavior will affect species interactions through multiple pathways, including by changing other aspects of predator behavior such as boldness, innovation, and social structure. Methods. To understand how foraging behavior impacts predator behavior, we conducted a controlled experiment to simulate hunting by introducing a prey model to captive coyotes (Canis latrans) and compared their behavior …

Influence Of Landscape Attributes On Virginia Opossum Density, David A. Bernasconi, Wesley C. Dixon, Matthew T. Hamilton, James L. Helton, Richard B. Chipman, Amy T. Gilbert, James C. Beasley, Olin E. Rhodes Jr., Guha Dharmarajan

United States Department of Agriculture Wildlife Services: Staff Publications

TheVirginia opossum (Didelphis virginiana), North America's only marsupial, has a range extending from southern Ontario, Canada, to the Yucatan Peninsula, Mexico, and from the Atlantic seaboard to the Pacific. Despite the Virginia opossum's taxonomic uniqueness in relation to other mammals in North America and rapidly expanding distribution, its ecology remains relatively understudied. Our poor understanding of the ecology of this important mesopredator is especially pronounced in the rural southeastern United States. Our goal was to estimate effects of habitat on opossum density within an extensive multiyear spatial capture‐recapture study. Additionally, we compared the results of this spatial capture‐recapture …

Multidisciplinary Engagement For Fencing Research Informs Efficacy And Rancher-To-Researcher Knowledge Exchange, Matthew Hyde, Stewart W. Breck, Alex Few, Jared Beaver, Joshua Schrecengost, Jim Stone, Cameron Krebs, Russell Talmo, Kari Eneas, Rae Nickerson, Kyran E. Kunkel, Julie K. Young

United States Department of Agriculture Wildlife Services: Staff Publications

Across much of the Western United States, recovery of large carnivore populations is creating new challenges for livestock producers. Reducing the risks of sharing the landscape with recovering wildlife populations is critical to private working lands, which play an vital role in securing future energy, water, food, and fiber for an ever-expanding human population. Fencing is an important mitigation practice that many ranchers, land managers, and conservationists implement to reduce carnivore-livestock conflict. While fencing strategies have been reviewed in the literature, research seldom incorporates knowledge from the people who utilize fencing the most (i.e., livestock producers). Incorporating producers and practitioners …

Longevity Of An Immunocontraceptive Vaccine Effect On Fecundity In Rats, Rebecca Pinkham, Douglas C. Eckery, Richard E. Mauldin, M. Gomm, F. Hill, F. Vial, G. Massei

United States Department of Agriculture Wildlife Services: Staff Publications

Increases in human-wildlife conflicts alongside cultural shifts against lethal control methods are driving the need for alternative wildlife management tools such as fertility control. Contraceptive formulations suitable for oral delivery would permit broader remote application in wildlife species.

This study evaluated the contraceptive effect and immune response to two novel injectable immunocontraceptive formulations targeting the Gonadotropin Releasing Hormone (GnRH): MAF-IMX294 and MAF-IMX294P conjugates, both identified as having potential as oral contraceptives. The study also explored whether in multiparous species immunocontraceptives may either totally prevent reproduction or also affect litter size.

Female rats, chosen as a model species, were given three …

Rapid Changes In Public Perception Toward A Conservation Initiative, Rebecca Niemiec, Richard E.W. Berl, Mireille Gonzalez, Tara L. Teel, Jonathan Salerno, Stewart Breck, Cassiopeia Camara, Matthew Collins, Courtney Scholtz, Dana Hoag, Kevin R. Crooks

United States Department of Agriculture Wildlife Services: Staff Publications

Rapid, widespread changes in public perceptions and behaviors have the potential to influence conservation outcomes. However, few studies have documented whether and how such shifts occur throughout the span of a conservation initiative. We examined the 2020 ballot initiative to reintroduce wolves into Colorado, which passed with less support than prior surveys had estimated. We conducted a postelection survey of Colorado residents using the same methods as our preelection survey to compare responses between surveys and to official election results. Reported voting in favor of wolf reintroduction in the postelection survey decreased in comparison to voting intentions shared in the …

A Model For Leveraging Animal Movement To Understand Spatio-Temporal Disease Dynamics, Mark Q. Wilber, Anni Yang, Raoul Boughton, Kezia R. Manlove, Ryan S. Miller, Kim M. Pepin, George Wittemyer

United States Department of Agriculture Wildlife Services: Staff Publications

The ongoing explosion of fine-resolution movement data in animal systems provides a unique opportunity to empirically quantify spatial, temporal and individual variation in transmission risk and improve our ability to forecast disease outbreaks. However, we lack a generalizable model that can leverage movement data to quantify transmission risk and how it affects pathogen invasion and persistence on heterogeneous landscapes. We developed a flexible model ‘Movement-driven modelling of spatio-temporal infection risk’ (MoveSTIR) that leverages diverse data on animal movement to derive metrics of direct and indirect contact by decomposing transmission into constituent processes of contact formation and duration and pathogen deposition …

Large- And Small-Scale Climate Influences Spring Migration Departure Probability Of American White Pelicans, D. Tommy King, Guiming Wang, Fred L. Cunningham

United States Department of Agriculture Wildlife Services: Staff Publications

Endogenous (e.g., age and sex) and exogenous (e.g., climate and resource availability) factors influence avian migration phenology. However, little is known regarding the migration ecology of birds at the non-breeding grounds, including the American white pelican (Pelecanus erythrorhynchos). We used Global Positioning System transmitters to track the movements and migration of 51 pelicans from 2002 to 2012. We used the Kaplan–Meier model to estimate pelican spring migration probabilities to quantify partial migration with 94 spring migration events and used the Cox proportional hazards model to evaluate the effects of the North Atlantic Oscillation index (NAOI), Southern Oscillation Index (SOI), and …

Adaptive Risk-Based Targeted Surveillance For Foreign Animal Diseases At The Wildlife-Livestock Interface, Ryan S. Miller, Sarah N. Bevins, Gericke Cook, Ross Free, Kim M. Pepin, Thomas Gidlewski, Vienna Brown

United States Department of Agriculture Wildlife Services: Staff Publications

Animal disease surveillance is an important component of the national veterinary infrastructure to protect animal agriculture and facilitates identification of foreign animal disease (FAD) introduction. Once introduced, pathogens shared among domestic and wild animals are especially challenging to manage due to the complex ecology of spillover and spillback. Thus, early identification of FAD in wildlife is critical to minimize outbreak severity and potential impacts on animal agriculture as well as potential impacts on wildlife and biodiversity. As a result, national surveillance and monitoring programs that include wildlife are becoming increasingly common. Designing surveillance systems in wildlife or, more importantly, at …

Evidence For Irruptive Fluctuation In Axis Deer Of Hawai‘I, Steven C. Hess, Jonathan Sprague, Jacob Muise

United States Department of Agriculture Wildlife Services: Staff Publications

Axis deer on the Hawaiian Islands of Maui, Lāna‘i, and Moloka‘i simultaneously experienced one of the most dramatic population crashes on record in 2020-2021, which coincided with extended drought conditions and prompted an emergency declaration for these islands. This phenomenon has been anecdotally documented during previous drought events in 2011-2012, but never formally studied. Newspaper articles document abundant deer becoming a nuisance to agriculture and natural resources, and then experiencing high mortality during droughts. This phenomenon fits Caughley’s (1970) operational definition of eruptive (sic) fluctuation “…as an increase in numbers over at least two generations, followed by a marked decline.” …

Cultivation Of Industrial Hemp On And Near Airports: Implications For Wildlife Use And Risk To Aviation Safety, Bradley F. Blackwell, Page E. Klug, Lee A. Humberg, Zachary T. Brym, Bryan M. Kluever, Jenna Edwards

United States Department of Agriculture Wildlife Services: Staff Publications

Industrial hemp (Cannabis sativa L.; hemp) is an emerging crop in the United States with little known about bird use or the potential for birds to become an agricultural pest. We identified birds associated with hemp fields, using repeated visits to oilseed plots in North Dakota, USA (n = 6) and cannabinoid (CBD) plots in Florida, USA (n = 4) from August to November 2020. We did not control for plot area or density; our observations were descriptive only. We observed 10 species in hemp, 12 species flying over hemp, and 11 species both foraging in and …

Industrial Hemp As A Resource For Birds In Agroecosystems: Human-Wildlife Conflict Or Conservation Opportunity?, Emily A. Kotten, Iona Hennessy, Bryan M. Kluever, Bradley F. Blackwell, Lee A. Humberg, Page E. Klug

United States Department of Agriculture Wildlife Services: Staff Publications

Industrial hemp (Cannabis sativa L.; hemp) is an emerging crop in the United States with little known about bird use or the potential for birds to become an agricultural pest. We identified birds associated with hemp fields, using repeated visits to oilseed plots in North Dakota, USA (n = 6) and cannabinoid (CBD) plots in Florida, USA (n = 4) from August to November 2020. We did not control for plot area or density; our observations were descriptive only. We observed 10 species in hemp, 12 species flying over hemp, and 11 species both foraging in and …

Circling The Drain: The Extinction Crisis And The Future Of Humanity, Rodolfo Dirzo, Gerardo Ceballos, Paul R. Ehrlich

Harold W. Manter Laboratory of Parasitology: Library Materials

Humanity has triggered the sixth mass extinction episode since the beginning of the Phanerozoic. The complexity of this extinction crisis is centered on the intersection of two complex adaptive systems: human culture and ecosystem functioning, although the significance of this intersection is not properly appreciated. Human beings are part of biodiversity and elements in a global ecosystem. Civilization, and perhaps even the fate of our species, is utterly dependent on that ecosystem’s proper functioning, which society is increasingly degrading. The crisis seems rooted in three factors. First, relatively few people globally are aware of its existence. Second, most people who …

Rural Parent's Experiences Of Stress And Resilience During The Covid-19 Pandemic And School Closure, Emily Wilson, Jungwon Eum, Yuenjung Joo, Martinique A. Sealy, Jentry Stoneman Barrett, Gwen C. Nugent, Joan M. Carraher, Angela G. Hinrichs

Department of Child, Youth, and Family Studies: Faculty Publications

The COVID-19 pandemic has generated social and economic disruptions, resulting in cascading effects on the health and well- being of global citizens. However, little research has focused on how COVID-19 has affected rural regions, despite rurality being a critical factor for understanding community impact and response to the pandemic. The purpose of this phenomenological study was to explore the experiences of rural Nebraskan parents with young children during the COVID-19 pandemic and school shutdown, and the strategies they used to support their families during that time. We conducted individual and group interviews with 22 white, non-Hispanic mothers living in rural …

Determinants Of Virus Variation, Evolution, And Host Adaptation, Katherine Latourrette, Hernan Garcia-Ruiz

Nebraska Center for Virology: Faculty Publications

Virus evolution is the change in the genetic structure of a viral population over time and results in the emergence of new viral variants, strains, and species with novel biological properties, including adaptation to new hosts. There are host, vector, environmental, and viral factors that contribute to virus evolution. To achieve or fine tune compatibility and successfully establish infection, viruses adapt to a particular host species or to a group of species. However, some viruses are better able to adapt to diverse hosts, vectors, and environments. Viruses generate genetic diversity through mutation, reassortment, and recombination. Plant viruses are exposed to …

Immunogenicity And Protective Efficacy Of A Recombinant Pichinde Viral-Vectored Vaccine Expressing Influenza Virus Hemagglutinin Antigen In Pigs, Sushmita Kumari, Jayeshbhai Chaudhari, Qinfeng Huang, Phillip Gauger, Marcelo Nunes De Almeida, Yuying Liang, Hinh Ly, Hiep Vu

Nebraska Center for Virology: Faculty Publications

Influenza A virus of swine (IAV-S) is an economically important swine pathogen. The IAV-S hemagglutinin (HA) surface protein is the main target for vaccine development. In this study, we evaluated the feasibility of using the recombinant tri-segmented Pichinde virus (rPICV) as a viral vector to deliver HA antigen to protect pigs against IAV-S challenge. Four groups of weaned pigs (T01–T04) were included in the study. T01 was injected with PBS to serve as a non-vaccinated control. T02 was inoculated with rPICV expressing green fluorescence protein (rPICV-GFP). T03 was vaccinated with rPICV expressing the HA antigen of the IAV-S H3N2 strain …

Malaria Resilience In South America: Epidemiology, Vector Biology, And Immunology Insights From The Amazonian International Center Of Excellence In Malaria Research Network In Peru And Brazil, Kathrine Torres, Marcelo U. Ferreira, Marcia C. Castro, Ananias A. Escalante, Jan E. Conn, Elizabeth Villasis, Maisa Da Silva Araujo, Gregorio Almeida, Priscila T. Rodrigues, Rodrigo M. Corder, Anderson R.J. Fernandes, Priscila R. Calil, Winni A. Ladeia, Stefano S. Garcia-Castillo, Joaquin Gomez, Lis Ribeiro Do Valle Antonelli, Ricardo T. Gazzinelli, Douglas T. Golenbock, Alejandro Llanos-Cuentas, Dionicia Gamboa, Joseph M. Vinetz

Harold W. Manter Laboratory of Parasitology: Library Materials

The 1990s saw the rapid reemergence of malaria in Amazonia, where it remains an important public health priority in South America. The Amazonian International Center of Excellence in Malaria Research (ICEMR) was designed to take a multidisciplinary approach toward identifying novel malaria control and elimination strategies. Based on geographically and epidemiologically distinct sites in the Northeastern Peruvian and Western Brazilian Amazon regions, synergistic projects integrate malaria epidemiology, vector biology, and immunology. The Amazonian ICEMR’s overarching goal is to understand how human behavior and other sociodemographic features of human reservoirs of transmission— predominantly asymptomatically parasitemic people—interact with the major Amazonian malaria …

Evaluation Of Ivermectin Antiviral Activity Against Avian Infectious Bronchitis Virus Using A Chicken Embryo Model, Donald L. Reynolds, E. Barry Simpson

School of Veterinary and Biomedical Sciences: Faculty Publications

Ivermectin is widely used in both animals and humans as an FDA-approved parasiticide. Ivermectin has also been reported to have antiviral activity against several viruses including coronaviruses. There are reports that indicate ivermectin may have some role in diminishing the disease caused by SARS-CoV-2, but the evidence is inconclusive. The objective of this study was to determine if ivermectin was efficacious in inhibiting avian infectious bronchitis virus (IBV, a coronavirus) replication in chicken embryos. Briefly, our approach was to use the Massachusetts vaccine strain of IBV in combination with various doses of ivermectin and then inoculate these preparations into chicken …

Structural Variant-Based Pangenome Construction Has Low Sensitivity To Variability Of Haplotype-Resolved Bovine Assemblies, Alexander S. Leonard, Danang Crysnanto, Zih-Hua Fang, Michael P. Heaton, Brian L. Vander Ley, Carolina Herrera, Heinrich Bollwein, Derek M. Bickhart, Benjamin D. Rosen, Hubert Pausch

School of Veterinary and Biomedical Sciences: Faculty Publications

Advantages of pangenomes over linear reference assemblies for genome research have recently been established. However, potential effects of sequence platform and assembly approach, or of combining assemblies created by different approaches, on pangenome construction have not been investigated. Here we generate haplotype-resolved assemblies from the offspring of three bovine trios representing increasing levels of heterozygosity that each demonstrate a substantial improvement in contiguity, completeness, and accuracy over the current Bos taurus reference genome. Diploid coverage as low as 20x for HiFi or 60x for ONT is sufficient to produce two haplotype-resolved assemblies meeting standards set by the Vertebrate Genomes Project. …

Does Swab Type Matter? Comparing Methods For Mannheimia Haemolytica Recovery And Upper Respiratory Microbiome Characterization In Feedlot Cattle, William B. Crosby, Lee Pinnell, John T. Richeson, Cory Wolfe, Jake Castle, John Dustin Loy, Sheryl P. Gow, Keun Seok Seo, Sarah F. Capik, Amelia R. Woolums, Paul S. Morley

School of Veterinary and Biomedical Sciences: Faculty Publications

Background: Bovine respiratory disease (BRD) is caused by interactions among host, environment, and pathogens. One standard method for antemortem pathogen identification in cattle with BRD is deep-guarded nasopharyngeal swabbing, which is challenging, costly, and waste generating. The objective was to compare the ability to recover Mannheimia haemolytica and compare microbial community structure using 29.5 inch (74.9 cm) deep-guarded nasopharyngeal swabs, 16 inch (40.6 cm) unguarded proctology swabs, or 6 inch (15.2 cm) unguarded nasal swabs when characterized using culture, real time-qPCR, and 16S rRNA gene sequencing. Samples for aerobic culture, qPCR, and 16S rRNA gene sequencing were collected from the …