Systems Biology Commons^™

Comparison Of Piping Plover Foraging Habitat On Artificial And Natural Sandbars On The Missouri River, Daniel H. Catlin, Joy H. Felio, James D. Fraser

The Prairie Naturalist

The presence of food close to nesting habitat is essential for piping plover (Charadrius melodus) reproductive output. Since 2004, the U.S. Army Corps of Engineers has been engineering artificial nesting and brood-rearing habitat for piping plovers on the Missouri River. We compared arthropod abundance indices from artificial and natural sandbars as part of an evaluation of foraging habitat. The artificial sandbars had fewer and different arthropods than natural sandbars. The arthropod indices, however, need to be considered in light of total area of foraging habitat. Although there were fewer arthropods on artificial sandbars, the abundance of foraging habitat and relatively …

Monitoring Standing Herbage Of Mid-Grass Prairie On The Fort Pierre National Grassland, South Dakota, Daniel W. Uresk

The Prairie Naturalist

Monitoring vegetation with a modified Robel pole on the Fort Pierre National Grassland was evaluated for combined shallow clay and loamy overflow ecological sites (dominated by warm-season grasses), and for clayey ecological sites (dominated by cool-season grasses). My objectives were to 1) develop a relationship between visual obstruction readings (VOR) and standing herbage, 2) provide guidelines for vegetation monitoring, and 3) evaluate vegetation monitoring during the growing season for clayey ecological sites. The relationship between visual obstruction readings and standing herbage was linear and regression coefficients were highly significant (P < 0.001) for both ecological types. Cluster analyses for shallow clay and loamy overflow ecological sites grouped the VOR and standing herbage (kg•ha-1) into 4 resource categories. Monitoring with 4 transects will provide adequate information to estimate standing herbage within 259 ha (1 section). Three resource categories (VOR + herbage) for clayey ecological sites were defined by cluster analyses. Monitoring with 4 transects was determined to provide reliable estimates of standing herbage. July validation of vegetation with the developed clayey ecological site model will provide reliable monitoring of standing herbage from July through November for this ecological site.

Spatial Ecology Of Urban Raccoons In Northeastern Ohio: Implications For Oral Rabies Vaccination, Are R. Berentsen, Mike R. Dunbar, Chadd E. Fitzpatrick, W. David Walter

The Prairie Naturalist

In 1977, rabies was detected in a raccoon (Procyon lotor) in West Virginia, and since the mid-1980s raccoon variant rabies has spread throughout the eastern United States and moved west as far as the eastern edge of Cleveland, Ohio. The primary tool to combat this spread is the distribution of oral rabies vaccine (ORV) baits. A thorough knowledge of raccoon space use is critical in determining bait placement, particularly in urban areas. We monitored nine raccoons in urban areas of Cleveland, Ohio, calculated home range sizes, monitored raccoon movement with respect to potential movement barriers, and used resource selection functions …

Book Reviews: Human Dimensions Of Ecological Restoration: Integrating Science, Nature, And Culture. Edited By Dave Egan, Evan E. Hjerpe, And Jesse Abrams., Chuck Harris

The Prairie Naturalist

The practice of ecological restoration has long been a key element in the management of ecosystems, but it has only been since the 1980s that research on resource management has specifically studied this practice and its foundations in restoration ecology. One major focus of this research has been the application of the theories and methods of the social sciences to ecological restoration activities.

Fairly recently, the application of the social sciences to resource management, in general, and to ecological restoration, in particular, has been couched in the broadest of terms. Beginning in the 1990s, this application was expressed in terms …

Evidence Of American Martens Populating The Turtle Mountains Of North Dakota, Amber J. Bagherian, Dorothy M. Fecske, Maggie D. Triska, Joseph A. Bishop, Dean J. Berezanski, Sandra K. Johnson, Robert P. Brooks, Thomas L. Serfass

The Prairie Naturalist

American martens (Martes americana) were native to northeastern North Dakota but were considered extirpated by the early 1800s. Although there is no historic evidence of martens occurring beyond the northeast, forested habitat potentially suitable for martens exists in the Turtle Mountains region of northcentral North Dakota and southwestern Manitoba. From 1989– 1991, the Turtle Mountain Trappers Association translocated 59 martens into the Canadian portion of the Turtle Mountains. During summer 2007, we used covered track-plates and/or remotely-triggered cameras placed at 123 survey sites distributed among 41 1-km2 grid cells (a GIS-generated layer imposed on electronic maps of the study region) …

Sickleweed On The Fort Pierre National Grassland: An Emerging Threat, Jack L. Bulter, Stefanie D. Wacker

The Prairie Naturalist

We report the first detailed field survey of sickleweed (Falcaria vulgaris L.) in the United States. Sickleweed is native to Europe, the Mediterranean, Asia Minor, and Iran and was first reported in the United States in 1922. It is listed by the Nebraska Invasive Species Council as a Category II invasive plant species. In recent years, abundance and distribution of sickle- weed has increased dramatically in and around the Fort Pierre National Grassland (FPNG), South Dakota. Management of such a rapidly expanding population is hampered by a general lack of baseline information on the biology and ecology of sickleweed. We …

Least And Merriam’S Shrews From Banner County, Nebraska, Jennifer N. Merlino, Alexandra R. Frohberg, Jamie Harmon, Keith Geluso

The Prairie Naturalist

Four species of shrews occur in the panhandle of western Nebraska – the masked shrew (Sorex cinereus), Merriam’s shrew (S. merriami), dwarf shrew (S. nanus), and least shrew (Cryptotis parva; Genoways et al. 2008). Little information is known regarding the distribution and habitat of those species due to few captures of individuals throughout the region (e.g., Jones 1964, Freeman et al. 1993, Benedict et al. 1999, 2000, Geluso et al. 2004). To date, no shrew has been reported from the southwestern part of the panhandle in Banner, Kimball, or Cheyenne counties. Here we present distributional records for the least shrew …

Grass And Canada Goldenrod (Solidago Canadensis) Competition And Implications For Management In The Northern Tallgrass Prairie, Alexander J. Smart, Gary E. Larson, Peter J. Bauman

The Prairie Naturalist

Canada goldenrod (Solidago canadensis L.) is a native perennial forb that can form dense clonal patches and become weedy in pastures of the Northern Tallgrass Prairie Ecoregion. Our objectives were to determine 1) the competitive effects between Canada goldenrod and grass, 2) the relationship between Canada goldenrod stem density and grass biomass, and 3) the distribution of Canada goldenrod stem density at the pasture scale. We used regression analysis to develop a relationship between Canada goldenrod stem density and grass biomass. Additionally, we estimated the frequency distribution of Canada goldenrod stem density categories using three evenly distributed 100 × 100-m …

Topographic Home Range Of Large Mammals: Is Planimetric Home Range Still A Viable Method?, W. David Walter, Justin W. Fischer, Teresa J. Frink, Scott E. Hygnstrom, Jonathan A. Jenks, Kurt C. Vercauteren

The Prairie Naturalist

Topography influences movement trajectories, quality of forages used, and behavioral response of large herbivores to anthropogenic disturbances, but research is lacking on the influence of terrain complexity on size of home range. Size of home range usually is based on planimetric area and therefore rarely accounts for the true surface area traversed by an animal. We conducted radiotelemetry on bighorn sheep (Ovis canadensis), Rocky Mountain elk (Cervus elaphus), mule deer (Odocoileus hemionus), and white-tailed deer (O. virginianus) equipped with VHF collars at three sites from 2002 to 2006 to document size of home range in areas that ranged from 400 …

Five New Records Of Ants (Hymenoptera: Formicidae) For Nebraska, Kristine T. Nemec, James C. Trager, Elizabeth Manley, Craig R. Allen

The Prairie Naturalist

Ants are ubiquitous and influential organisms in terrestrial ecosystems. About 1,000 ant species occur in North America, where they are found in nearly every habitat (Fisher and Cover 2007). Ants are critical to ecological processes and structure. Ants affect soils via tunneling activity (Baxter and Hole 1967), disperse plant seeds (Lengyel et al. 2009), prey upon a variety of insects and other invertebrates (Way and Khoo 1992, Folgarait 1998), are often effective primary consumers through their prodigious consumption of floral and especially extrafloral nectar, and honeydew (Tobin 1994), and serve as prey for invertebrates (Gotelli 1996, Gastreich 1999) and vertebrates …

Microhabitat Selection By Bobcats In The Badlands And Black Hills Of South Dakota, Usa: A Comparison Of Prairie And Forested Habitats, Cory E. Mosby, Troy W. Grovenburg, Robert W. Klaver, Greg M. Schroeder, Lowell E. Schmitz, Jonathan A. Jenks

The Prairie Naturalist

An understanding of habitat selection is important for management of wildlife species. Although bobcat (Lynx rufus) resource selection has been addressed in many regions of the United States, little work has been conducted in the Northern Great Plains. From 2006–2008 we captured and radiocollared 20 bobcats in the Badlands (n = 10) and Black Hills (n = 10) regions of South Dakota. During the summers of 2008 and 2009 we collected habitat measurements at 349 (176 Badlands, 176 Black Hills) bobcat locations and 321 (148 Badlands, 173 Black Hills) random sites. Microhabitat characteristics at bobcat use sites varied with region …

My Manuscript Needs Revision: Now What?, Christopher N. Jacques

The Prairie Naturalist

Greetings GPNSS members! Hopefully by now you have read my previous editorial notes about the transformation of The Prairie Naturalist (Journal) during the past few years and the work the Editorial Staff continues to do to provide a quality publication venue for the Journal’s membership and prospective authors. During my tenure as Editor-in-Chief (Editor), I have had the good fortune of working with many authors and a truly dedicated Editorial Staff. Most topics for editorials come to me relatively easily, though admittedly I found myself scratching my head when thinking about a topic for this editorial. After much pensive thought, …

Spatiotemporal Variation In Vegetation Structure Resulting From Pyric-Herbivory, Sherry Leis, Lloyd W. Morrison, Michael D. Debacker

The Prairie Naturalist

Pyric-herbivory is a process that is widely assumed to create greater habitat heterogeneity in grasslands at the landscape scale than could be achieved by either fire or grazing alone. Yet, few studies have actually quantified the effects of pyric- herbivory on vegetation structure within layers of the grass canopy. Here we quantify the effects of pyric-herbivory on a pasture at Tallgrass Prairie National Preserve in Kansas. We subdivided the pasture into three patches and burned one patch each year in a three-year rotation. We estimated visual obstruction for 25-cm strata and recorded maximum vegetation height. We found that recently burned …

Notes: Red-Tailed Hawk Predation Of A Striped Skunk, Steven G. Platt, Thomas R. Rainwater

The Prairie Naturalist

Skunks (Mephitidae) are capable of projecting pungent, oily musk from paired anal glands (Verts 1967), which acts as a central nervous system depressant (Wade- Smith and Verts 1982), and can incapacitate birds of prey if directed into the eyes (Garcelon 1981). Consequently, few raptors are known to prey on striped skunks (Mephitis mephitis). Great horned owls (Bubo virginianus) are the only raptor that regularly preys on skunks (Bent 1938b, Lowery 1974, Houston et al. 1998), although occasional instances of predation by golden eagles (Aquila chrysaetos; Olendorff 1976, Palmer 1988a), bald eagles (Haliaeetus leucocephalis; Broley 1952, Wade-Smith and Verts 1982), northern …

Energy-Saving Hypothermia Reduces Flight Ability In Mourning Doves, Jennie M. Carr, Steven L. Lima

Symposium 2012

Overwintering birds are frequently exposed to thermal challenges that can quickly decrease energy reserves, thus leading to an increase in the risk of starvation. During these periods of energetic hardship, many avian species use nocturnal hypothermia to conserve energy that would otherwise be lost remaining warm throughout the night (McKechnie & Lovegrove 2002). However, a cool body temperature (Tb) may limit a bird’s ability to monitor the environment and may slow their response to a potential threat. Thus, birds likely trade-off between the benefits of energy-saving hypothermia and the potential costs of reduced behavioral responsiveness to predators (Welton et al. …

Sphingosine-1-Phosphate Enhances Satellite Cell Activation In Dystrophic Muscles Through A S1pr2/Stat3 Signaling Pathway, Kenneth C. Loh, Weng-In Leong, Morgan E. Carlson, Babak Oskouian, Ashok Kumar, Henrik Fyrst, Meng Zhang, Richard L. Proia, Eric P. Hoffman, Julie D. Saba

Genomics and Precision Medicine Faculty Publications

No abstract provided.

San Antonio High School Food Justice Program: A Handbook And Evaluation Of Edible Education, Katherine B. Tenneson

Pitzer Senior Theses

This senior environmental studies thesis explains and analyzes edible education through a food and gardening program at a continuation high school in Claremont, California. The first chapter situates the program-specific analysis by providing background information of the edible education movement, a history of the Edible Schoolyard in Berkeley, California, and an explanation of why food is a powerful teaching tool. The second chapter delineates the program by describing all of its components and compiling essential resources and teaching documents. The third chapter is based on interviews with 9 of 12 involved students and 7 teachers, and thoroughly explains the outcomes …

Analysis Of Large Phenotypic Variability Of Eec And Shfm4 Syndromes Caused By K193e Mutation Of The Tp63 Gene, Jianhua Wei, Yang Xue, Lian Wu, Jie Ma, Xiuli Yi, Junrui Zhang, Bin Lu, Chunying Li, Dashuang Shi, Songtao Shi, Xinghua Feng, Tao Cai

Genomics and Precision Medicine Faculty Publications

No abstract provided.

Effects Of Moderate Swim Exercise On Adiposity And Metabolic Function In Mice, Roberta L. Pohlman, Ana Carneiro, Vera Farah, Lynn K. Hartzler, Mariana Morris

Biological Sciences Faculty Publications

No abstract provided.

Investigating Three Decades Of Vegetation Change In A Mojave Desert Mountain Range, Chris Lee Roberts

UNLV Theses, Dissertations, Professional Papers, and Capstones

This project is a vegetation change study spanning 29 years in the Newberry Mountains of Southern Nevada. Long term monitoring data are crucial for understanding the effects of climate change on vegetation dynamics. Successful management intervention in vegetation change will require identification of early indicator plant species and their responses to climatic cues. This project is one of the oldest comparisons of resurveyed Mojave vegetation community plots with repeatable methodology and the longest survey interval reported for the southeastern Mojave Desert. 103 plots were relocated and resurveyed based on data methods in Jim Holland's thesis titled "A Vegetative Analysis of …

Determining The Genotype-Phenotype Connection In Synthetic Inducible Gene Expression Systems, Rhys M. Adams

Dissertations and Theses (Open Access)

Introduction Gene expression is an important process whereby the genotype controls an individual cell’s phenotype. However, even genetically identical cells display a variety of phenotypes, which may be attributed to differences in their environment. Yet, even after controlling for these two factors, individual phenotypes still diverge due to noisy gene expression. Synthetic gene expression systems allow investigators to isolate, control, and measure the effects of noise on cell phenotypes. I used mathematical and computational methods to design, study, and predict the behavior of synthetic gene expression systems in S. cerevisiae, which were affected by noise.

Methods I created probabilistic …

Role Of Non-Immune Mechanisms Of Muscle Damage In Idiopathic Inflammatory Myopathies, William Coley, Sree Rayavarapu, Kanneboyina Nagaraju

Genomics and Precision Medicine Faculty Publications

No abstract provided.

Glucocorticoid-Treated Mice Are An Inappropriate Positive Control For Long-Term Preclinical Studies In The Mdx Mouse, Arpana Sali, Alfredo D. Guerron, Heather Gordish-Dressman, Christopher F. Spurney, Micaela Iantorno, Eric P. Hoffman, Kanneboyina Nagaraju

Genomics and Precision Medicine Faculty Publications

No abstract provided.

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

Heterogeneity In Genetic Diversity Among Non-Coding Loci Fails To Fit Neutral Coalescent Models Of Population History, Jeffrey L. Peters, Trina E. Roberts, Kevin Winker, Kevin G. Mccracken

Biological Sciences Faculty Publications

Inferring aspects of the population histories of species using coalescent analyses of non-coding nuclear DNA has grown in popularity. These inferences, such as divergence, gene flow, and changes in population size, assume that genetic data reflect simple population histories and neutral evolutionary processes. However, violating model assumptions can result in a poor fit between empirical data and the models. We sampled 22 nuclear intron sequences from at least 19 different chromosomes (a genomic transect) to test for deviations from selective neutrality in the gadwall (Anas strepera), a Holarctic duck. Nucleotide diversity among these loci varied by nearly two …

Distribution, Population Size, And Structure Of Himalayan Grey Goral Naemorhedus Goral Bedfordi (Cetartiodactyla: Bovidae) In Pakistan, Fakhar -I- Abbas, Kathreen E. Ruckstuhl, Afsar Mian, Tanveer Akhtar, Thomas P. Rooney

Biological Sciences Faculty Publications

Himalayan grey goral (Naemorhedus goral bedfordi) is a Red List (Near Threatened) member of Caprinae endemic to Asia, occupying the south-facing slopes of the Himalaya Mountains. The species is listed as Vulnerable on the National Pakistan Red List, but the distribution and abundance of the species within the nation is poorly known. We conducted a national census of Himalayan grey goral in Pakistan during 2002 – 2004, with the objective of documenting the geographic locations of populations, estimating population size, and describing group sizes and sex ratios. We conducted a direct count census in 98 sites distributed over …

Time Of Day Regulates Subcellular Trafficking, Tripartite Synaptic Localization, And Polyadenylation Of The Astrocytic Fabp7 Mrna, Jason R. Gerstner, William M. Vanderheyden, Timothy Lavaute, Cara J. Westmark, Labib Rouhana, Allan I. Pack, Marvin Wickens, Charles F. Landry

Biological Sciences Faculty Publications

The astrocyte brain fatty acid binding protein (Fabp7) has previously been shown to have a coordinated diurnal regulation of mRNA and protein throughout mouse brain, and an age-dependent decline in protein expression within synaptoneurosomal fractions. Mechanisms that control time-of-day changes in expression and trafficking Fabp7 to the perisynaptic process are not known. In this study, we confirmed an enrichment of Fabp7 mRNA and protein in the astrocytic perisynaptic compartment, and observed a diurnal change in the intracellular distribution of Fabp7 mRNA in molecular layers of hippocampus. Northern blotting revealed a coordinated time-of-day-dependent oscillation for the Fabp7 mRNA poly(A) tail throughout …

Family History Of Autoimmune Disease In Patients With Aicardi-Goutières Syndrome, Johanna L. Schmidt, Ivana Olivieri, Jodie M. Vento, Elisa Fazzi, Heather A. Gordish-Dressman, Simona Orcesi, Adeline Vanderver

Genomics and Precision Medicine Faculty Publications

PURPOSE: The purpose of this study was to explore anecdotal evidence for an increase in the prevalence of autoimmune diseases in family members of patients with Aicardi-Goutières syndrome (AGS).

METHODS: Pedigrees of patients and controls were analyzed using chi-square and logistic regression to assess differences in reports of autoimmune disease among family members of cases and controls. Data was collected at Children's National Medical Center in Washington, DC, USA and at the International Aicardi-Goutières Syndrome Association Scientific Headquarters, C. Mondino National Institute of Neurology in Pavia, Italy.

RESULTS: The number of individuals with reported autoimmune disease is significantly related to …

Phylogenetic Search Through Partial Tree Mixing., Kenneth Sundberg, Mark Clement, Quinn Snell, Dan Ventura, Michael Whiting, Keith Crandall

Computational Biology Institute

BACKGROUND: Recent advances in sequencing technology have created large data sets upon which phylogenetic inference can be performed. Current research is limited by the prohibitive time necessary to perform tree search on a reasonable number of individuals. This research develops new phylogenetic algorithms that can operate on tens of thousands of species in a reasonable amount of time through several innovative search techniques.

RESULTS: When compared to popular phylogenetic search algorithms, better trees are found much more quickly for large data sets. These algorithms are incorporated in the PSODA application available at http://dna.cs.byu.edu/psoda

CONCLUSIONS: The use of Partial Tree Mixing …

Eps Homology Domain Endosomal Transport Proteins Differentially Localize To The Neuromuscular Junction, Suzanne E. Mate, Jack H. Van Der Meulen, Priyanka Arya, Sohinee Bhattacharyya, Hamid Band, Eric P. Hoffman

Genomics and Precision Medicine Faculty Publications

No abstract provided.