Systems Biology Commons^™

Phragmites Australis In South Dakota: Historical Distribution And Environment, Carol A. Johnston, Kayla L. Miller

The Prairie Naturalist

Common reed, Phragmites australis, has long been a component of Northern Plains wetlands, but impending invasion by the non-native P. australis haplotype M may displace native haplotypes in the future. To increase understanding of historical Phragmites occurrence, we developed a geographic information system (GIS) protocol to improve the georeferencing of specimens from South Dakota herbaria, and mapped the distribution of Phragmites relative to geology, physiographic regions, and water bodies. There were 91 Phragmites herbarium specimens from South Dakota and adjacent Wyoming. Phragmites collections occurred in nearly all physiographic regions of the state, with concentrations occurring in the Prairie Coteau of …

Distribution Of Crayfish Species In Select North Dakota Streams, Cari-Ann Hayer, Terrance L. Velazquez, Mclain S. Johnson, Brian Graeb

The Prairie Naturalist

Crayfish have an integral role in aquatic ecosystems, serving as herbivores, predators, detritivores, and prey for fishes and other aquatic and terrestrial animals (Momot 1995, Taylor et al. 1996, Martin 1997). Many crayfish populations are currently declining as a result of habitat alteration (Taylor et al. 1996) and invasive predators (e.g., rusty crayfish Orconectes rusticus [Girard; Lodge et al. 2000]). Knowledge of crayfish distribution and biology in North America and specifically North Dakota is sparse or lacking (Taylor et al. 1996) and baseline information is necessary to identify effects of anthropogenic alterations. Early inventories documented 3 crayfish species in North …

Assessing The Role Of Conspecific Attraction In Habitat Restoration For Henslow’S Sparrows In Iowa, Jennifer A. Vogel, Rolf R. Koford, David L. Otis

The Prairie Naturalist

The presence of conspecific individuals may provide important cues about habitat quality for territorial songbirds. We tested the ability of a conspecific song playback system to attract Henslow’s sparrows to previously unoccupied restored habitat. We successfully attracted Heslow’s sparrows to 3 of 7 treatment plots using conspecific song playbacks and we found no Henslow’s sparrows in control plots. The addition of social cues using playback systems in restored grassland habitats may aid conservation efforts of Henslow’s sparrows to available habitat.

Calodium Hepaticum In White-Tailed Jackrabbits In South Dakota, Dustin J. Schaible, Charles D. Dieter, Regg D. Neiger, Michael B. Hildreth

The Prairie Naturalist

White-tailed jackrabbits (Lepus townsendii) are common on the prairie, and an important species in prairie food webs (Lim 1987). Although it has been suggested that jackrabbits have cyclic populations (Donoho 1972, Gross et al. 1974, Anderson and Shumar 1986), there is concern that a general downward trend exists in populations in the Northern Great Plains (Feldhamer et al. 2003). Disease incidence in white-tailed jackrabbits is poorly known (Feldhamer et al. 2003), but may be an important factor in population changes. Tularemia, a disease caused by bacteria (Francisella tularensis), occurs throughout the Northern Hemisphere and can affect many mammals including hares, …

Habitat Selection By Female Swift Foxes (Vulpes Velox) During The Pup- Rearing Season, Indrani Sasmal, Jonathan A. Jenks, Troy W. Grovenburg, Shubham Datta, Greg. M. Schroeder, Robert W. Klaver, Kevin M. Honness

The Prairie Naturalist

The swift fox (Vulpes velox) was historically distributed in western South Dakota including the region surrounding Badlands National Park (BNP). The species declined during the mid-1800s, largely due to habitat loss and poisoning targeted at wolves (Canis lupis) and coyotes (C. latrans). Only a small population of swift foxes near Ardmore, South Dakota persisted. In 2003, an introduction program was initiated at BNP with swift foxes translocated from Colorado and Wyoming. We report on habitat use by female swift foxes during the pup-rearing season (May–July) in 2009. Analyses of location data from 13 radiomarked female foxes indicated disproportional use (P < 0.001) of some habitats relative to their availability within swift fox home ranges. Swift foxes used grassland (ŵ = 1.01), sparse vegetation (ŵ = 1.43) and prairie dog towns (ŵ = 1.18) in proportion to their availability, whereas they were less likely to use woodland (ŵ = 0.00), shrubland (ŵ = 0.14), pasture/agricultural-land (ŵ = 0.25) and development (ŵ = 0.16) relative to availability. Swift foxes typically are located in habitats that provide greater visibility, such as shortgrass prairie and areas with sparse vegetation; which allow detection of approaching coyotes (e.g., primary predator of swift foxes).

First Record Of The Least Weasel In The Black Hills Of South Dakota, Tim R. Mullican

The Prairie Naturalist

The least weasel (Mustela nivalis) is a circumboreal species, occurring in North America from Alaska to the Appalachian Mountains (Jones et al. 1983). In the Great Plains, the least weasel recently expanded its range southward through Nebraska (Benedict et al. 2000) and Kansas (Choate et al. 1979, Bailey and Terman 1986) into Oklahoma (Clark and Clark 1988). Also, in recent decades, the least weasel has expanded from eastern and central Nebraska into western Nebraska (Benedict et al. 2000). In South Dakota, least weasels have been previously reported from the eastern 3/4 of the state (Jones et al. 1983, Higgins et …

Domainrbf: A Bayesian Regression Approach To The Prioritization Of Candidate Domains For Complex Diseases., Wangshu Zhang, Yong Chen, Fengzhu Sun, Rui Jiang

College of Science & Mathematics Departmental Research

BACKGROUND: Domains are basic units of proteins, and thus exploring associations between protein domains and human inherited diseases will greatly improve our understanding of the pathogenesis of human complex diseases and further benefit the medical prevention, diagnosis and treatment of these diseases. Within a given domain-domain interaction network, we make the assumption that similarities of disease phenotypes can be explained using proximities of domains associated with such diseases. Based on this assumption, we propose a Bayesian regression approach named "domainRBF" (domain Rank with Bayes Factor) to prioritize candidate domains for human complex diseases.

RESULTS: Using a compiled dataset containing 1,614 …

Avian Community Ecology And The Shifting Baseline In Sugarcreek Metropark, Jennifer Lynne Hays, Thomas P. Rooney, Jeffrey L. Peters

Biological Sciences Faculty Publications

No abstract provided.

Abundance And Trends Of Woodpecker Populations In The Wright State Biology Preserve, Brittany Damron, Thomas P. Rooney

Biological Sciences Faculty Publications

No abstract provided.

Carbon Sequestration In Soils Of The Wright State University Biology Preserve, Laurie Wissler, Thomas P. Rooney

Biological Sciences Faculty Publications

No abstract provided.

Review Of The Tallgrass Prairie Center Guide To Prairie Restoration In The Upper Midwest. By Daryl Smith, Dave Williams, Greg Houseal, And Kirk Henderson., Gerry Steinauer

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

Tallgrass prairie restoration in the Upper Midwest is the focus of this guide. Its geographic area of coverage includes the eastern fifth of South Dakota and Nebraska and northeast Kansas, a region some ascribe to the eastern Great Plains. Two types of prairie restoration are dealt with: prairie reconstruction, which the authors define as creating prairie from scratch on sites where prairie plants no longer exist; and prairie remnant restoration, defined as upgrading degraded existing prairies. The book comprises five sections: "Reconstruction Planning," "Implementing Reconstruction," "Prairie Restoration and Management," "Special Cases," and "Native Seed Production." There are 16 chapters, each …

Rising Seas, Stormy Skies, Margaret (Peg) A. Van_Patten Ms.

Wrack Lines

Rising seas and more intense storms will affect Connecticut and Long Island Sound if climate change continues at present rates.

Long Island Sound And Climate Change: What Is Going To Happen?, Juliana Barrett

Wrack Lines

Certain plants and animals can be used as "sentinels", to help us monitor the impacts of a changing climate and warming planet on the ecology and biodiversity of Long Island Sound.

Caffeine Metabolism And Cytochrome P450 Enzyme Mrna Expression Levels Of Genetically Diverse Inbred Mouse Strains, Neal Addicott, Michael Malfatti, Gabriela G. Loots

STAR Program Research Presentations

Cytochrome P450 (CYP) enzymes activate or eliminate medications and other xenobiotics, and Caffeine has been used as an indicator of activity for some CYPs. The natural genetic variation in the human population for caffeine metabolizing CYPs does not yet have an established animal model for comparison, but the natural variation in inbred mouse strains presents an attractive starting point. The project gave four different strains of mice a 40mg/kg dose of caffeine and sampled blood and liver tissue after 30 minutes. Samples were analyzed using High Performance Liquid Chromatography (HPLC), reverse transcription PCR (rtPCR), and quantitative PCR (qPCR). The DBA/2J …

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

Effects Of Xs® Energy Drink On Aerobic Exercise Capacity Of Athletes, Kevin M. Sheehan, Lynn K. Hartzler

Biological Sciences Faculty Publications

A small increase in performance is often the difference between winning and losing for athletes, and energy supplements are marketed to give them a competitive edge. One such supplement is XS® Energy Drink which contains B vitamins, caffeine, taurine, and an herbal adaptogen blend. XS® Energy Drink is primarily designed and marketed as an alertness stimulus; however, it is also marketed to athletes as a performance enhancing supplement. The hypothesis of this investigation was that the consumption of XS® Energy Drink before exercise would increase aerobic capacity (an increase in Vo2max) and time to fatigue, and would decrease time for …

Mathematical Modeling Of Clostridium Thermocellum’S Metabolic Responses To Environmental Perturbation, Bless Adotey

Theses and Dissertations--Biosystems and Agricultural Engineering

Clostridium thermocellum is a thermophilic anaerobe that is capable of producing ethanol directly from lignocellulosic compounds, however this organism suffers from low ethanol tolerance and low ethanol yields. In vivo mathematical modeling studies based on steady state traditional metabolic flux analysis, metabolic control analysis, transient and steady states’ flux spectrum analysis (FSA) were conducted on C. thermocellum’s central metabolism. The models were developed in Matrix Laboratory software ( MATLAB^® (The Language of Technical Computing), R2008b, Version 7.7.0.471)) based on known stoichiometry from C. thermocellum pathway and known physical constraints. Growth on cellobiose from Metabolic flux analysis (MFA) and Metabolic …

Computer Simulation Of A Hollow-Fiber Bioreactor: Heparan Regulated Growth Factors-Receptors Binding And Dissociation Analysis, Changjiang Zhang

University of Kentucky Doctoral Dissertations

This thesis demonstrates the use of numerical simulation in predicting the behavior of proteins in a flow environment.

A novel convection-diffusion-reaction computational model is first introduced to simulate fibroblast growth factor (FGF-2) binding to its receptor (FGFR) on cell surfaces and regulated by heparan sulfate proteoglycan (HSPG) under flow in a bioreactor. The model includes three parts: (1) the flow of medium using incompressible Navier-Stokes equations; (2) the mass transport of FGF-2 using convection-diffusion equations; and (3) the cell surface binding using chemical kinetics. The model consists of a set of coupled nonlinear partial differential equations (PDEs) for flow and …

The Proteomic Response Of Sea Squirts (Genus Ciona Congeners) To Heat Stress: Evidence For Differential Thermal Sensitivities, Loredana Serafini

Master's Theses

The sea squirts Ciona intestinalis and C. savignyi have disparate distribution patterns, which may result from differences in their thermal tolerance limits. Because C. intestinalis, an almost cosmopolitan species, has a more widespread distribution, it is thought that it is better adapted to endure a wide range of temperatures. In order to compare the heat stress response between these two congeners, we studied global changes in protein expression, using a proteomics approach. To characterize the response to extreme heat stress, animals of both species were exposed to temperatures of 22°C, 25°C, and 28°C for 6 h, and then were …