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Articles 1 - 19 of 19

Full-Text Articles in Systems Biology

Mcnamara 201412 Nih Scap Innocentive Challenge Solution - T-Bow Rainbow T-Cells And Tumor Cells Spatial Multiplexing Gene Expression Reporter System – Plus Supplement Plus Posters - 20151027 - Please Download "75" Instead, George Mcnamara Oct 2015

Mcnamara 201412 Nih Scap Innocentive Challenge Solution - T-Bow Rainbow T-Cells And Tumor Cells Spatial Multiplexing Gene Expression Reporter System – Plus Supplement Plus Posters - 20151027 - Please Download "75" Instead, George Mcnamara

George McNamara

McNamara 201412 NIH SCAP InnoCentive Challenge Solution - T-Bow Rainbow T-cells and Tumor Cells Spatial Multiplexing Gene Expression Reporter System – plus supplement plus posters - 20151027.

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Please download the current 20151027 (October 27, 2015) Tattletales and T-Bow update from

http://works.bepress.com/gmcnamara/75/

The bepress web site is not letting me replace the old pdf here at "65" with the additional 10 pages update.

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The download is my/Cooper lab solution (submission) to the 2014 NIH Single Cell Analysis Program (SCAP) InnoCentive Challenge, "Follow That Cell". I submitted the Solution on 20141215Mon (with 20 minutes to spare). The Challenge web page …


Optimal Experimental Design For Parameter Identification And Model Selection, René Schenkendorf May 2014

Optimal Experimental Design For Parameter Identification And Model Selection, René Schenkendorf

René Schenkendorf

No abstract provided.


Stellaris Fish Workshop Gadph And Dapi Z-Series, George Mcnamara Dec 2013

Stellaris Fish Workshop Gadph And Dapi Z-Series, George Mcnamara

George McNamara

Stellaris FISH workshop GADPH and DAPI Z-series at MD Anderson Cancer Center, Houston, TX.

The zip file contains raw and GPU deconvolved image data from a workshop Biosearch Technologies conducted for MDACC researchers in December 2013. Image data was acquired on a Leica DMI6000 microscope with Lumencor SOLA light engine, DAPI and Cy5 filter cubes, Hamamatsu ORCA FLASH4.0 sCMOS camera (500 ms exposure time per plane for Quasar 670).

Pixel size 100 nm XY.

Z-step size 200 nm.

32 planes (power of 2 is optimal for GPU deconvolution). With 500 ms exposure time, the Quasar 670 GADPH FISH probes images …


Site Assessment For Environmental Restoration, David A. Bainbridge Jan 2013

Site Assessment For Environmental Restoration, David A. Bainbridge

David A Bainbridge

Restoring degraded desert ecosystems is challenging but it can be done. The first key step is understanding the site history and understanding the disturbance and current site conditions. With this information the appropriate steps can be taken to improve the site ecosystem function and structure.


Container Plants For Desert Restoration, David A. Bainbridge Jan 2013

Container Plants For Desert Restoration, David A. Bainbridge

David A Bainbridge

Container planting is essential for most desert restoration work because direct seeding is rarely successful. The containers best suited for desert planting are often taller (deeper) to facilitate root development. Fertilizer management, inoculation, irrigation and pruning can be used to maximize root growth with minimal shoot development.


Online Model Selection Approach Based On Unscented Kalman Filtering, René Schenkendorf, Michael Mangold Jan 2013

Online Model Selection Approach Based On Unscented Kalman Filtering, René Schenkendorf, Michael Mangold

René Schenkendorf

Highly predictive mathematical models are of inestimable value in systems biology. Their application ranges from investigations of basic processes in living organisms up to model based drug design in the field of pharmacology. For the development of reliable models suitable model candidates and related model parameters have to be identified by minimising the difference between the model outcome and available measurement data. Due to the complexity of the analysed processes mathematical models capture only the essential features of interest. This approximate representation, which is usually combined with a vague knowledge of basic processes, leads in many cases to a variety …


Health Effects Of Trihalomethanes As Chlorinated Disinfection By Products: A Review Article, Mohammad Reza Mohammad Shafiee, Lobat Taghavi Jan 2012

Health Effects Of Trihalomethanes As Chlorinated Disinfection By Products: A Review Article, Mohammad Reza Mohammad Shafiee, Lobat Taghavi

Mohammad Reza Mohammad Shafiee

Trihalomethanes (THMs) were among the first disinfection byproducts to be discovered in chlorinated water. The substances form during a reaction between chlorine and organic matter in the water. Trihalomethanes are suspected to have negative effects on birth such as, low birth weight, intrauterine growth retardation in term births, as well as gestational age and preterm delivery. There are also some evidences showing these by-products to be mutagenic and carcinogenic, the greatest amount of evidence being related to the bladder cancer. However, there exist inconsistencies regarding such effects of THMs as different studies have provided different results in this regard. The …


Kinetic Analytical Method For Determination Of Uric Acid In Human Urine Using Analyte Pulse Perturbation Technique, Zeljko D. Cupic Jan 2012

Kinetic Analytical Method For Determination Of Uric Acid In Human Urine Using Analyte Pulse Perturbation Technique, Zeljko D. Cupic

Zeljko D Cupic

No abstract provided.


The Stability Of The Extended Model Of Hypothalamic-Pituitary-Adrenal (Hpa) Axis Examined By Stoichiometric Network Analysis, Zeljko D. Cupic Jan 2011

The Stability Of The Extended Model Of Hypothalamic-Pituitary-Adrenal (Hpa) Axis Examined By Stoichiometric Network Analysis, Zeljko D. Cupic

Zeljko D Cupic

No abstract provided.


Predictive Modeling Of The Hypothalamic-Pituitary-Adrenal (Hpa) Axis Response To Acute And Chronic Stress, Zeljko D. Cupic Jan 2011

Predictive Modeling Of The Hypothalamic-Pituitary-Adrenal (Hpa) Axis Response To Acute And Chronic Stress, Zeljko D. Cupic

Zeljko D Cupic

No abstract provided.


Desempenho Do Bicho-Da-Seda (Lepidoptera: Bombycidae) Sob O Efeito Da Adição De Minerais Nas Folhas De Amoreira Antes E Depois Do Trato Alimentar, Rodrigo Souza Santos Rss Jan 2010

Desempenho Do Bicho-Da-Seda (Lepidoptera: Bombycidae) Sob O Efeito Da Adição De Minerais Nas Folhas De Amoreira Antes E Depois Do Trato Alimentar, Rodrigo Souza Santos Rss

Rodrigo Souza Santos RSS

No abstract provided.


Improvement Of The Stoichiometric Network Analysis For Determination Of Instability Conditions Of Complex Nonlinear Reaction Systems, Zeljko D. Cupic Jan 2010

Improvement Of The Stoichiometric Network Analysis For Determination Of Instability Conditions Of Complex Nonlinear Reaction Systems, Zeljko D. Cupic

Zeljko D Cupic

No abstract provided.


Predictive Modeling Of The Hypothalamic-Pituitary-Adrenal (Hpa) Function. Dynamic Systems Theory Approach By Stoichiometric Network Analysis And Quenching Small Amplitude Oscillations, Zeljko D. Cupic Jan 2009

Predictive Modeling Of The Hypothalamic-Pituitary-Adrenal (Hpa) Function. Dynamic Systems Theory Approach By Stoichiometric Network Analysis And Quenching Small Amplitude Oscillations, Zeljko D. Cupic

Zeljko D Cupic

No abstract provided.


Sustainable Management, David A. Bainbridge Jan 2008

Sustainable Management, David A. Bainbridge

David A Bainbridge

Management for the future must include a broader and more complex view of the world. Sustainable management of business can be profitable and provide benefits for workers, shareholders as well as communities, nations and the planet.


Stoichiometric Network Analysis And Associated Dimensionless Kinetic Equations. Application To A Model Of The Bray-Liebhafsky Reaction, Zeljko D. Cupic Jan 2008

Stoichiometric Network Analysis And Associated Dimensionless Kinetic Equations. Application To A Model Of The Bray-Liebhafsky Reaction, Zeljko D. Cupic

Zeljko D Cupic

No abstract provided.


50 Nuances De Grey En Streaming - Regarder Film Complet!!!, Serg/Gorduj Gordienko Nov 2007

50 Nuances De Grey En Streaming - Regarder Film Complet!!!, Serg/Gorduj Gordienko

Serg/Gorduj Gordienko

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Mathematical Modeling Of The Hypothalamic-Pituitary-Adrenal System Activity, Zeljko D. Cupic Jan 2005

Mathematical Modeling Of The Hypothalamic-Pituitary-Adrenal System Activity, Zeljko D. Cupic

Zeljko D Cupic

No abstract provided.


Soil Treatment For Restoration Projects, David A. Bainbridge Jan 1999

Soil Treatment For Restoration Projects, David A. Bainbridge

David A Bainbridge

Soil treatment is a critical step in restoration projects. When soil problems are ignored restoration projects fail. Erosion, compaction, limited infiltration and other problems can make a site very different from its historic function and structure. Treatment can be done with equipment or by hand and will greatly improve chances for success.


The Palmer Philosophy Of Chiropractic – An Historical Perspective., Dennis M. Richards Jan 1991

The Palmer Philosophy Of Chiropractic – An Historical Perspective., Dennis M. Richards

Dennis M Richards

This paper presents the Palmer philosophy of chiropractic from an historical viewpoint. It examines how influences in the life of DD Palmer, such as spiritualism, theosophy and magnetic healing helped to shape the chiropractic philosophy expressed by him. It also oulines the philosophy of BJ Palmer, explaining how it may have been influenced by legal challenges to the early pioneers of chiropractic. Contemporary expression of the Palmer philosophy, as articulated by Strang, is also noted.