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Articles 361 - 390 of 467

Full-Text Articles in Plant Pathology

First Report Of Leaf Spot Of Smooth Bromegrass Caused By Pithomyces Chartarum In Nebraska, C. Eken, C. C. Jochum, G. Y. Yuen Jan 2006

First Report Of Leaf Spot Of Smooth Bromegrass Caused By Pithomyces Chartarum In Nebraska, C. Eken, C. C. Jochum, G. Y. Yuen

Department of Plant Pathology: Faculty Publications

Smooth bromegrass (Bromus inermis Leyss.) is the most common perennial grass species cultivated for forage in North America. During late fall of 2004, smooth bromegrass plants in Lincoln, NE were observed to have brown lesions on leaf midveins that were several centimeters long. Symptomatic leaves were surface disinfested for 1 min in 2% NaOCl and incubated at 25°C on potato dextrose agar (PDA) and water agar. The fungus, Pithomyces chartarum (Berk. & Curt) Ellis, was isolated consistently and identified on the basis of morphological characteristics (1). Colonies were effused and black on PDA. Conidiophores measured 3.5 to 8 …


Bioinformatics-Enabled Identification Of The Hrpl Regulon And Type Iii Secretion System Effector Proteins Of Pseudomonas Syringae Pv. Phaseolicola 1448a, Monica Vencato, Fang Tian, James R. Alfano, C. Robin Buell, Samuel Cartinhour, Genevieve A. Declerck, David S. Guttman, John Stavrinides, Vinita Joardar, Magdalen Lindeberg, Philip A. Bronstein, John W. Mansfield, Christopher R. Myers, Alan Collmer, David J. Schneider Jan 2006

Bioinformatics-Enabled Identification Of The Hrpl Regulon And Type Iii Secretion System Effector Proteins Of Pseudomonas Syringae Pv. Phaseolicola 1448a, Monica Vencato, Fang Tian, James R. Alfano, C. Robin Buell, Samuel Cartinhour, Genevieve A. Declerck, David S. Guttman, John Stavrinides, Vinita Joardar, Magdalen Lindeberg, Philip A. Bronstein, John W. Mansfield, Christopher R. Myers, Alan Collmer, David J. Schneider

Department of Plant Pathology: Faculty Publications

The ability of Pseudomonas syringae pv. phaseolicola to cause halo blight of bean is dependent on its ability to translocate effector proteins into host cells via the hypersensitive response and pathogenicity (Hrp) type III secretion system (T3SS). To identify genes encoding type III effectors and other potential virulence factors that are regulated by the HrpL alternative sigma factor, we used a hidden Markov model, weight matrix model, and type III targeting-associated patterns to search the genome of P. syringae pv. phaseolicola 1448A, which recently was sequenced to completion. We identified 44 high-probability putative Hrp promoters upstream of genes encoding the …


Regulation Of Hyphal Morphogenesis And The Dna Damage Response By The Aspergillus Nidulans Atm Homolog Atma, Iran Malavazi, Camile P. Semighini, Marcia Regina Von Zeska Kress, Steven D. Harris, Gustavo H. Goldman Jan 2006

Regulation Of Hyphal Morphogenesis And The Dna Damage Response By The Aspergillus Nidulans Atm Homolog Atma, Iran Malavazi, Camile P. Semighini, Marcia Regina Von Zeska Kress, Steven D. Harris, Gustavo H. Goldman

Department of Plant Pathology: Faculty Publications

Ataxia telangiectasia (A-T) is an inherited disorder characterized by progressive loss of motor function and susceptibility to cancer. The most prominent clinical feature observed in A-T patients is the degeneration of Purkinje motor neurons. Numerous studies have emphasized the role of the affected gene product, ATM, in the regulation of the DNA damage response. However, in Purkinje cells, the bulk of ATM localizes to the cytoplasm and may play a role in vesicle trafficking. The nature of this function, and its involvement in the pathology underlying A-T, remain unknown. Here we characterize the homolog of ATM (AtmA) in the filamentous …


First Report Of Crown And Stem Rot Of Orchid (Orchis Palustris) Caused By Sclerotinia Minor, C. Eken, S. Ercişli, A. Eşitken, E. Demirci, G. Y. Yuen Aug 2005

First Report Of Crown And Stem Rot Of Orchid (Orchis Palustris) Caused By Sclerotinia Minor, C. Eken, S. Ercişli, A. Eşitken, E. Demirci, G. Y. Yuen

Department of Plant Pathology: Faculty Publications

Orchis palustris Jacq. is a wild orchid native to wetlands in eastern Anatolia. During June of 2003, near Erzurum, Turkey, a decline of this orchid was observed in several meadows that had been irrigated for forage production. Stems were chlorotic, wilted, and collapsed. There was a soft, watery rot at the crowns and lower stems. White mycelium and black sclerotia formed on necrotic stem and crown tissues. The fungus was isolated from sclerotia on potato dextrose agar (PDA) and identified as Sclerotinia minor Jagger on the basis of small sclerotia (0.5 to 2.5 mm long) scattered throughout the colonies (2). …


Mutagenesis Of Β-1,3-Glucanase Genes In Lysobacter Enzymogenes Strain C3 Results In Reduced Biological Control Activity Toward Bipolaris Leaf Spot Of Tall Fescue And Pythium Damping-Off Of Sugar Beet, Jeffrey D. Palumbo, Gary Y. Yuen, C. Christine Jochum, Kristin Tatum, Donald Y. Kobayashi Jun 2005

Mutagenesis Of Β-1,3-Glucanase Genes In Lysobacter Enzymogenes Strain C3 Results In Reduced Biological Control Activity Toward Bipolaris Leaf Spot Of Tall Fescue And Pythium Damping-Off Of Sugar Beet, Jeffrey D. Palumbo, Gary Y. Yuen, C. Christine Jochum, Kristin Tatum, Donald Y. Kobayashi

Department of Plant Pathology: Faculty Publications

Lysobacter enzymogenes produces extracellular lytic enzymes capable of degrading the cell walls of fungi and oomycetes. Many of these enzymes, including β-1,3-glucanases, are thought to contribute to the biological control activity expressed by several strains of the species. L. enzymogenes strain C3 produces multiple extracellular β-1,3-glucanases encoded by the gluA, gluB, and gluC genes. Analysis of the genes indicates they are homologous to previously characterized genes in the related strain N4-7, each sharing >95% amino acid sequence identity to their respective counterparts. The gluA and gluC gene products encode enzymes belonging to family 16 glycosyl …


Proposed Guidelines For A Unified Nomenclature And Phylogenetic Analysis Of Type Iii Hop Effector Proteins In The Plant Pathogen Pseudomonas Syringae, Magdalen Lindeberg, John Stavrinides, Jeffrey H. Chang, James R. Alfano, Alan Collmer, Jeffrey L. Dangl, Jean T. Greenberg, John W. Mansfield, David S. Guttman Apr 2005

Proposed Guidelines For A Unified Nomenclature And Phylogenetic Analysis Of Type Iii Hop Effector Proteins In The Plant Pathogen Pseudomonas Syringae, Magdalen Lindeberg, John Stavrinides, Jeffrey H. Chang, James R. Alfano, Alan Collmer, Jeffrey L. Dangl, Jean T. Greenberg, John W. Mansfield, David S. Guttman

Department of Plant Pathology: Faculty Publications

Pathovars of Pseudomonas syringae interact with their plant hosts via the action of Hrp outer protein (Hop) effector proteins, injected into plant cells by the type III secretion system (TTSS). Recent availability of complete genome sequences for a number of P. syringae pathovars has led to a significant increase in the rate of effector discovery. However, lack of a systematic nomenclature has resulted in multiple names being assigned to the same Hop, unrelated Hops designated by the same alphabetic character, and failure of name choices to reflect consistent standards of experimental confirmation or phylogenetic relatedness. Therefore, specific experimental and bioinformatic …


Crop Updates 2005 - Lupins And Pulses, Peter White, Martin Harries, Ian Pritchard, Rodger Beermier, Mark Seymor, David Syme, Bevan Buirchell, Kedar Adhikari, Mark Sweetingham, Geoff Thomas, Jon Clements, Shao Fang Wang, Ping Si, David Bowran, Huaan Yang, Mike Baker, Wayne Parker, Bob French, Damien Owen D'Arcy, Bill Bowden, Craig Scanlan, Jeff Russell, Angie Roe, Greg Shea, Chris Matthews, Shahab Pathan, Abul Hashem, Sofia Sipsas, John Quealy, Roger Jones, Clive Francis, Colin Smith, Gordon Francis, Tanveer Khan, Kerry Regan, Jenny Garlinge, Rod Hunter, Greg Mussell, Glen Riethmuller, Moin Salam, Jean Galloway, Larn Mcmurray, Kambot Siddique, Dirranie Kirby, Murray Blyth, Fucheng Shan, Heather Clarke, Madeleine Wouterlood, Hans Lambers, Erik Veneklaas, Peter Smith, Gae Plunkett, Tim Pope, Janine Croser, Julia Wilson, Leanne Young, Michael Materne, Colin Hanbury, Dennis Van Gool, Noel Schoknecht, Richard Bell, Wendy Vance, Kedar Adhikari, Mohammad Nuruzzaman, Erik Veneklaas, Mike Bolland, Stuart Pearse, Geoff Thomas, Ken Adcock, Bill Mcleod, Pip Payne, Alan Harrod, Glenda Smith, Rohan Prince Feb 2005

Crop Updates 2005 - Lupins And Pulses, Peter White, Martin Harries, Ian Pritchard, Rodger Beermier, Mark Seymor, David Syme, Bevan Buirchell, Kedar Adhikari, Mark Sweetingham, Geoff Thomas, Jon Clements, Shao Fang Wang, Ping Si, David Bowran, Huaan Yang, Mike Baker, Wayne Parker, Bob French, Damien Owen D'Arcy, Bill Bowden, Craig Scanlan, Jeff Russell, Angie Roe, Greg Shea, Chris Matthews, Shahab Pathan, Abul Hashem, Sofia Sipsas, John Quealy, Roger Jones, Clive Francis, Colin Smith, Gordon Francis, Tanveer Khan, Kerry Regan, Jenny Garlinge, Rod Hunter, Greg Mussell, Glen Riethmuller, Moin Salam, Jean Galloway, Larn Mcmurray, Kambot Siddique, Dirranie Kirby, Murray Blyth, Fucheng Shan, Heather Clarke, Madeleine Wouterlood, Hans Lambers, Erik Veneklaas, Peter Smith, Gae Plunkett, Tim Pope, Janine Croser, Julia Wilson, Leanne Young, Michael Materne, Colin Hanbury, Dennis Van Gool, Noel Schoknecht, Richard Bell, Wendy Vance, Kedar Adhikari, Mohammad Nuruzzaman, Erik Veneklaas, Mike Bolland, Stuart Pearse, Geoff Thomas, Ken Adcock, Bill Mcleod, Pip Payne, Alan Harrod, Glenda Smith, Rohan Prince

Crop Updates

This session covers sixty five papers from different authors:

1. 2004 LUPIN AND PULSE INDUSTRY HIGHLIGHTS, Peter White Department of Agriculture

2. BACKGROUND, Peter White Department of Agriculture

2004 REGIONAL ROUNDUP

3. Northern Agricultural Region, Martin Harries, Department of Agriculture

4. Central Agricultural Region, Ian Pritchard, Department of Agriculture

5. Great Southern and Lakes, Rodger Beermier, Department of Agriculture

6. Esperance Port Zone, Mark Seymour, Department of Agriculture, and David Syme, The Grain Pool of WA

LUPIN AND PULSE PRODUCTION AGRONOMY AND GENETIC IMPROVEMENT

7. Lupin, Martin Harries, Department of Agriculture …


Mutual Interference Between Genomic Rna Replication And Subgenomic Mrna Transcription In Brome Mosaic Virus, Valery Z. Grdzelishvili, Hernan Garcia-Ruiz, Tokiko Watanabe, Paul Ahlquist Feb 2005

Mutual Interference Between Genomic Rna Replication And Subgenomic Mrna Transcription In Brome Mosaic Virus, Valery Z. Grdzelishvili, Hernan Garcia-Ruiz, Tokiko Watanabe, Paul Ahlquist

Department of Plant Pathology: Faculty Publications

Replication by many positive-strand RNA viruses includes genomic RNA amplification and subgenomic mRNA (sgRNA) transcription. For brome mosaic virus (BMV), both processes occur in virus-induced, membrane- associated compartments, require BMV replication factors 1a and 2a, and use negative-strand RNA3 as a template for genomic RNA3 and sgRNA syntheses. To begin elucidating their relations, we examined the interaction of RNA3 replication and sgRNA transcription in Saccharomyces cerevisiae expressing 1a and 2a, which support the full RNA3 replication cycle. Blocking sgRNA transcription stimulated RNA3 replication by up to 350%, implying that sgRNA transcription inhibits RNA3 replication. Such inhibition was independent of the …


The Glycosphingolipid Globotriaosylceramide In The Metastatic Transformation Of Colon Cancer, Olga Kovbasnjuk, Rakhilya Mourtazina, Boris Baibakov, Thomas Wang, Christian Elowsky, Michael A. Choti, Anne Kane, Mark Donowitz Jan 2005

The Glycosphingolipid Globotriaosylceramide In The Metastatic Transformation Of Colon Cancer, Olga Kovbasnjuk, Rakhilya Mourtazina, Boris Baibakov, Thomas Wang, Christian Elowsky, Michael A. Choti, Anne Kane, Mark Donowitz

Department of Plant Pathology: Faculty Publications

The most devastating aspect of cancer is the emergence of metastases. Thus, identification of potentially metastatic cells among a tumor cell population and the underlying molecular changes that switch cells to a metastatic state are among the most important issues in cancer biology. Here we show that, although normal human colonic epithelial cells lack the glycosphingolipid globotriaosylceramide (Gb3), this molecule is highly expressed in metastatic colon cancer. In addition, a subpopulation of cells that are greatly enriched in Gb3 and have an invasive phenotype was identified in human colon cancer cell lines. In epithelial cells in culture, …


Chlorella Virus Marburg Topoisomerase Ii: High Dna Cleavage Activity As A Characteristic Of Chlorella Virus Type Ii Enzymes, Jennifer S. Dickey, Tae-Jin Choi, James L. Van Etten, Neil Osheroff Jan 2005

Chlorella Virus Marburg Topoisomerase Ii: High Dna Cleavage Activity As A Characteristic Of Chlorella Virus Type Ii Enzymes, Jennifer S. Dickey, Tae-Jin Choi, James L. Van Etten, Neil Osheroff

Department of Plant Pathology: Faculty Publications

Although the formation of a covalent enzyme-cleaved DNA complex is a prerequisite for the essential functions of topoisomerase II, this reaction intermediate has the potential to destabilize the genome. Consequently, all known eukaryotic type II enzymes maintain this complex at a low steady-state level. Recently, however, a novel topoisomerase II was discovered in Paramecium bursaria chlorella virus-1 (PBCV-1) that has an exceptionally high DNA cleavage activity [Fortune et al. (2001) J. Biol. Chem. 276, 24401-24408]. If robust DNA cleavage is critical to the physiological functions of chlorella virus topoisomerase II, then this remarkable characteristic should be …


Morphogenesis In Germinating Fusarium Graminearum Macroconidia, Steven D. Harris Jan 2005

Morphogenesis In Germinating Fusarium Graminearum Macroconidia, Steven D. Harris

Department of Plant Pathology: Faculty Publications

Fusarium graminearum (teleomorph Gibberella zeae) is a significant pathogen of wheat and corn. F. graminearum forms multicellular macroconidia that play an important role in dissemination of the disease. The spatial pattern of morphogenesis in germinating macroconidia is described. Germ tubes preferentially emerge from the apical cells in a bipolar pattern that appears to be common to filamentous fungi. Chitin deposition occurs at two locations: the spore apices and cortical regions of macroconidial cells that subsequently produce a germ tube. The spatial pattern of morphogenesis requires the presence of functional microtubules, which may be responsible for the transport of key …


Promoters From Chlorella Virus Genes Providing For Expression Of Genes In Prokaryotic And Eukaryotic Hosts, Amitava Mitra, James L. Van Etten Jun 2004

Promoters From Chlorella Virus Genes Providing For Expression Of Genes In Prokaryotic And Eukaryotic Hosts, Amitava Mitra, James L. Van Etten

Department of Plant Pathology: Faculty Publications

The invention is directed to novel promoters or mutants thereof from Chlorella virus DNA methyltansferase genes. A Chlorella Virus gene promoter is operably linked to a first and/or Second DNA sequence encoding a gene that is different from the Chlorella virus to form an expression cassette. An expression cassette can be introduced into prokaryotic and/or eukaryotic cells and can provide for a high level of expression of the gene encoded by the first and/or Second DNA sequence. The invention also provides a method for Screening other Chlorella virus genes for promoters that can function to express a heterologous gene in …


Closterovirus Bipolar Virion: Evidence For Initiation Of Assembly By Minor Coat Protein And Its Restriction To The Genomic Rna 5' Region, Satyanarayana Tatineni, Siddarame Gowda, Maria A. Ayllon, William O. Dawson Jan 2004

Closterovirus Bipolar Virion: Evidence For Initiation Of Assembly By Minor Coat Protein And Its Restriction To The Genomic Rna 5' Region, Satyanarayana Tatineni, Siddarame Gowda, Maria A. Ayllon, William O. Dawson

Department of Plant Pathology: Faculty Publications

The long flexuous virions of the Closteroviridae have a unique bipolar architecture incorporating two coat proteins, with most of the helical nucleocapsid encapsidated by the major coat protein (CP) and a small portion of one end encapsidated by the minor coat protein (CPm). It is not known whether CPm encapsidates the genomic RNA and, if so, which end and what effects transition between the two coat proteins. Two other virus-encoded proteins, an HSP70 homolog (HSP70h) and an = 61-kDa protein, are required to augment virion assembly. In this work, we examine the in vivo encapsidation of Citrus tristeza virus by …


Molecular Differentiation Of Two Sibling Species Of The Black Fly Simulium Vittatum (Diptera: Simuliidae) Based On Random Amplified Polymorphic Dna, G. A. Duncan, P. H. Adler, K. P. Pruess, Thomas O. Powers Jan 2004

Molecular Differentiation Of Two Sibling Species Of The Black Fly Simulium Vittatum (Diptera: Simuliidae) Based On Random Amplified Polymorphic Dna, G. A. Duncan, P. H. Adler, K. P. Pruess, Thomas O. Powers

Department of Plant Pathology: Faculty Publications

Larvae of the black fly morphospecies Simulium vittatum from Colorado, Montana, Nebraska, and New Hampshire were cytologically identified as either the IS-7 or the IIIL-1 cytospecies. DNA was PCR amplified from cytotyped larvae using eight 10-mer primers, labeled with 33P, and run on polyacrylamide gels. The entire data set of 96 amplicons produced incomplete separation of the two cytospecies when subjected to neighbor-joining and maximum parsimony analyses. However, when analyzed within geographical regions, separate species status was supported. Boot- strap support for distinctness of the two cytospecies was best in Colorado where they were collected in true sympatry. The …


The Hopptof Locus Of Pseudomonas Syringae Pv. Tomato Dc3000 Encodes A Type Iii Chaperone And A Cognate Effector, Libo Shan, Hye-Sook Oh, Jianfu Chen, Ming Guo, Jianmin Zhou, James R. Alfano, Alan Collmer, Xu Jia, Xiaoyan Tang Jan 2004

The Hopptof Locus Of Pseudomonas Syringae Pv. Tomato Dc3000 Encodes A Type Iii Chaperone And A Cognate Effector, Libo Shan, Hye-Sook Oh, Jianfu Chen, Ming Guo, Jianmin Zhou, James R. Alfano, Alan Collmer, Xu Jia, Xiaoyan Tang

Department of Plant Pathology: Faculty Publications

Type III secretion systems are highly conserved among gram-negative plant and animal pathogenic bacteria. Through the type III secretion system, bacteria inject a number of virulence proteins into the host cells. Analysis of the whole genome sequence of Pseudomonas syringae pv. tomato DC3000 strain identified a locus, named HopPtoF, that is homologous to the avirulence gene locus avrPphF in P. syringae pv. phaseolicola. The HopPtoF locus harbors two genes, ShcFPto and HopFPto, that are preceded by a single hrp box promoter. We present evidence here to show that ShcFPto and HopFPto encode a type …


Effects Of Choline, Betaine, And Wheat Floral Extracts On Growth Of Fusarium Graminearum, Jessica S. Engle, Patrick E. Lipps, Terry L. Graham, Michael J. Boehm Jan 2004

Effects Of Choline, Betaine, And Wheat Floral Extracts On Growth Of Fusarium Graminearum, Jessica S. Engle, Patrick E. Lipps, Terry L. Graham, Michael J. Boehm

Department of Plant Pathology: Faculty Publications

Fusarium head blight has been more severe when infection occurs during anthesis, indicating that floral organs may be important infection courts. Choline acetate and glycinebetaine have been extracted from wheat and reported to be growth stimulants of Fusarium graminearum. They are hypothesized to enhance infection and tissue colonization. Growth of F. graminearum was examined on media amended with extracts from floral parts of nine wheat genotypes with various Fusarium head blight resistance levels. Results indicated no significant effect of anther, palea, or lemma extracts on radial growth when compared with unamended controls. Effects on spore germination and hyphal growth …


Nematode Molecular Diagnostics: From Bands To Barcodes, Tom Powers Jan 2004

Nematode Molecular Diagnostics: From Bands To Barcodes, Tom Powers

Department of Plant Pathology: Faculty Publications

Nematodes are considered among the most difficult animals to identify. DNA-based diagnostic methods have already gained acceptance in applications ranging from quarantine determinations to assessments of biodiversity. Researchers are currently in an information-gathering mode, with intensive efforts applied to accumulating nucleotide sequence of 18S and 28S ribosomal genes, internally transcribed spacer regions, and mitochondrial genes. Important linkages with collateral data such as digitized images, video clips and specimen voucher web pages are being established on GenBank and NemATOL, the nematode-specific Tree of Life database. The growing DNA taxonomy of nematodes has lead to their use in testing specific short sequences …


Type Iii Secretion System Effector Proteins: Double Agents In Bacterial Disease And Plant Defense, James R. Alfano, Alan Collmer Jan 2004

Type Iii Secretion System Effector Proteins: Double Agents In Bacterial Disease And Plant Defense, James R. Alfano, Alan Collmer

Department of Plant Pathology: Faculty Publications

Many phytopathogenic bacteria inject virulence effector proteins into plant cells via a Hrp type III secretion system (TTSS). Without the TTSS, these pathogens cannot defeat basal defenses, grow in plants, produce disease lesions in hosts, or elicit the hypersensitive response (HR) in nonhosts. Pathogen genome projects employing bioinformatic methods to identify TTSS Hrp regulon promoters and TTSS pathway targeting signals suggest that phytopathogenic Pseudomonas, Xanthomonas, and Ralstonia spp. harbor large arsenals of effectors. The Hrp TTSS employs cus- tomized cytoplasmic chaperones, conserved export components in the bacterial en- velope (also used by the TTSS of animal pathogens), and …


Gaca, The Response Regulator Of A Two-Component System, Acts As A Master Regulator In Pseudomonas Syringae Pv. Tomato Dc3000 By Controlling Regulatory Rna, Transcriptional Activators, And Alternate Sigma Factors, Asita Chatterjee, Yaya Cui, Hailian Yang, Alan Collmer, James R. Alfano, Arun K. Chatterjee Nov 2003

Gaca, The Response Regulator Of A Two-Component System, Acts As A Master Regulator In Pseudomonas Syringae Pv. Tomato Dc3000 By Controlling Regulatory Rna, Transcriptional Activators, And Alternate Sigma Factors, Asita Chatterjee, Yaya Cui, Hailian Yang, Alan Collmer, James R. Alfano, Arun K. Chatterjee

Department of Plant Pathology: Faculty Publications

Concerted investigations of factors affecting host-pathogen interactions are now possible with the model plant Arabidopsis thaliana and its model pathogen Pseudomonas syringae pv. tomato DC3000, as their whole genome sequences have become available. As a prelude to analysis of the regulatory genes and their targets, we have focused on GacA, the response regulator of a two-component system. The DC3000 gene was cloned by testing for the reversal of phenotypes of an Erwinia GacA– mutant. A GacA– mutant of DC3000 constructed by marker exchange produces much-reduced levels of transcripts of three alternate sigma factors: HrpL, required for the production of effector …


Effects Of Modification Of The Transcription Initiation Site Context On Citrus Tristeza Virus Subgenomic Rna Synthesis, Maria A. Ayllon, Siddarame Gowda, Satyanarayana Tatineni, Alexander V. Karasev, Scott Adkins, Munir Mawassi, Jose Guerri, Pedro Moreno, William O. Dawson Sep 2003

Effects Of Modification Of The Transcription Initiation Site Context On Citrus Tristeza Virus Subgenomic Rna Synthesis, Maria A. Ayllon, Siddarame Gowda, Satyanarayana Tatineni, Alexander V. Karasev, Scott Adkins, Munir Mawassi, Jose Guerri, Pedro Moreno, William O. Dawson

Department of Plant Pathology: Faculty Publications

Citrus tristeza virus (CTV), a member of the Closteroviridae, has a positive-sense RNA genome of about 20 kb organized into 12 open reading frames (ORFs). The last 10 ORFs are expressed through 3'-coterminal subgenomic RNAs (sgRNAs) regulated in both amounts and timing. Additionally, relatively large amounts of complementary sgRNAs are produced. We have been unable to determine whether these sgRNAs are produced by internal promotion from the full-length template minus strand or by transcription from the minus-stranded sgRNAs. Understanding the regulation of 10 sgRNAs is a conceptual challenge. In analyzing commonalities of a replicase complex in producing so many …


Induced Resistance As A Mechanism Of Biological Control By Lysobacter Enzymogenes Strain C3, Ozlem Kilic-Ekici, Gary Y. Yuen Apr 2003

Induced Resistance As A Mechanism Of Biological Control By Lysobacter Enzymogenes Strain C3, Ozlem Kilic-Ekici, Gary Y. Yuen

Department of Plant Pathology: Faculty Publications

Induced resistance was found to be a mechanism for biological control of leaf spot, caused by Bipolaris sorokiniana, in tall fescue (Festuca arundinacea) using the bacterium Lysobacter enzymogenes strain C3. Resistance elicited by C3 suppressed germination of B. sorokiniana conidia on the phylloplane in addition to reducing the severity of leaf spot. The pathogen-inhibitory effect could be separated from antibiosis by using heat-inactivated cells of C3 that retained no antifungal activity. Application of live or heat-killed cells to tall fescue leaves resulted only in localized resistance confined to the treated leaf, whereas treatment of roots resulted in …


Fungal Biology And Agriculture: Revisiting The Field, O. Yarden, D. J. Ebbole, S. Freeman, R. J. Rodriguez, M. B. Dickman Jan 2003

Fungal Biology And Agriculture: Revisiting The Field, O. Yarden, D. J. Ebbole, S. Freeman, R. J. Rodriguez, M. B. Dickman

Department of Plant Pathology: Faculty Publications

Plant pathology has made significant progress over the years, a process that involved overcoming a variety of conceptual and technological hurdles. Descriptive mycology and the advent of chemical plant-disease management have been followed by biochemical and physiological studies of fungi and their hosts. The later establishment of biochemical genetics along with the introduction of DNA-mediated transformation have set the stage for dissection of gene function and advances in our understanding of fungal cell biology and plant–fungus interactions. Currently, with the advent of high-throughput technologies, we have the capacity to acquire vast data sets that have direct relevance to the numerous …


Transcription Strategy In A Closterovirus: A Novel 5'-Proximal Controller Element Of Citrus Tristeza Virus Produces 5'- And 3'-Terminal Subgenomic Rnas And Differs From 3' Open Reading Frame Controller Elements, Siddarame Gowda, Maria A. Ayllon, Satyanarayana Tatineni, Moshe Bar-Joseph, William O. Dawson Jan 2003

Transcription Strategy In A Closterovirus: A Novel 5'-Proximal Controller Element Of Citrus Tristeza Virus Produces 5'- And 3'-Terminal Subgenomic Rnas And Differs From 3' Open Reading Frame Controller Elements, Siddarame Gowda, Maria A. Ayllon, Satyanarayana Tatineni, Moshe Bar-Joseph, William O. Dawson

Department of Plant Pathology: Faculty Publications

Citrus tristeza virus (CTV) produces more than thirty 3'- or 5'-terminal subgenomic RNAs (sgRNAs) that accumulate to various extents during replication in protoplasts and plants. Among the most unusual species are two abundant populations of small 5'-terminal sgRNAs of approximately 800 nucleotides (nt) termed low-molecular-weight tristeza (LMT1 and LMT2) RNAs. Remarkably, CTV replicons with all 10 3' genes deleted produce only the larger LMT1 RNAs. These 5'-terminal positive-sense sgRNAs do not have corresponding negative strands and were hypothesized to be produced by premature termination during plus-strand genomic RNA synthesis. We characterized a cis-acting element that controls the production …


Evaluation Of Resistance Screening Methods For Sclerotinia Stem Rot Of Soybean And Dry Bean, Linda S. Kull, Tri D. Vuong, Kris S. Powers, Kent M. Eskridge, James R. Steadman, Glen L. Hartman Jan 2003

Evaluation Of Resistance Screening Methods For Sclerotinia Stem Rot Of Soybean And Dry Bean, Linda S. Kull, Tri D. Vuong, Kris S. Powers, Kent M. Eskridge, James R. Steadman, Glen L. Hartman

Department of Plant Pathology: Faculty Publications

Three methods to identify levels of resistance to Sclerotinia sclerotiorum in soybean (Glycine max) and dry bean (Phaseolus vulgaris) were compared using multiple data analyses. The three methods were mycelial plug inoculations of cotyledons, cut stems, and detached leaves. Six S. sclerotiorum isolates of known relative aggressiveness were inoculated on each of three soybean and dry bean cultivars with varied response to S. sclerotiorum. For soybean, all three inoculation methods accurately identified isolate aggressiveness irrespective of cultivar, but identification of susceptible and partially resistant soybean cultivars was influenced by isolate. For dry bean, the cotyledon and cut …


Crop Updates 2002 - Geraldton, Steve Penny Jr, Robin Wilson, Iian Barclay, Robyn Mclean, Robert Loughman, Jenny Garlinge, Bill Lambe, Neil Venn, Peter Clarke, Wal Anderson, Raffaele De Cima, James Bee, Darshan Sharma, Sheena Lyon, Melaine Kupsch, Mohammad Amjad, Pam Burgess, Veronika Reck, Brenda Shackley, Ray Tugwell, Bindi Webb, Robert Park, Daya Patabendige, Phil Michael, Debbie Thackray, Jenny Hawkes, Roger Jones, David Stephens, Bob French, Laurie Wahlsten, Glen Riethmuller, M. Bolland, P. White, T. Khan, Kevin Walden, Ravjit Khangura, Martin J. Barbetti, Graham Walton, Françoise Berlandier, Paul Carmody, Christiaan Valentine, Roy Latter, Keith Devenish, Bill Bowden, Michael O'Connell, Chris Gazey, David Gartner, Caroline Peek, David Rogers, Greg Shea, George Yan, Alexandra Douglas, Sally Peltzer, Paul Matson, David Minkey, Clinton Revell, Giles Glasson, Dean Thomas, Aik Cheam, Siew Lee, Mike Clarke, Peter Newman, Glenn Adam Mar 2002

Crop Updates 2002 - Geraldton, Steve Penny Jr, Robin Wilson, Iian Barclay, Robyn Mclean, Robert Loughman, Jenny Garlinge, Bill Lambe, Neil Venn, Peter Clarke, Wal Anderson, Raffaele De Cima, James Bee, Darshan Sharma, Sheena Lyon, Melaine Kupsch, Mohammad Amjad, Pam Burgess, Veronika Reck, Brenda Shackley, Ray Tugwell, Bindi Webb, Robert Park, Daya Patabendige, Phil Michael, Debbie Thackray, Jenny Hawkes, Roger Jones, David Stephens, Bob French, Laurie Wahlsten, Glen Riethmuller, M. Bolland, P. White, T. Khan, Kevin Walden, Ravjit Khangura, Martin J. Barbetti, Graham Walton, Françoise Berlandier, Paul Carmody, Christiaan Valentine, Roy Latter, Keith Devenish, Bill Bowden, Michael O'Connell, Chris Gazey, David Gartner, Caroline Peek, David Rogers, Greg Shea, George Yan, Alexandra Douglas, Sally Peltzer, Paul Matson, David Minkey, Clinton Revell, Giles Glasson, Dean Thomas, Aik Cheam, Siew Lee, Mike Clarke, Peter Newman, Glenn Adam

Crop Updates

This session covers twenty seven papers from different authors:

1. Taking the Why out of Wyalkatchem – the new widely adapted wheat variety, Steve Penny Jr, Department of Agriculture

2. Future wheat varieties, Robin Wilson, Iain Barclay,Robyn McLean, Robert Loughman, Jenny Garlinge, Bill Lambe, Neil Venn and Peter Clarke

Department of Agriculture

3. Maximising wheat variety performance through agronomic management, Wal Anderson, Raffaele Del Cima, James Bee, Darshan Sharma, Sheena Lyon, Melaine Kupsch, Mohammad Amjad, Pam Burgess, Veronika Reck, Brenda Shackley, Ray Tugwell, Bindi Webb and Steve Penny Jr

Department of Agriculture

4. Cereal rust update 2002 – …


Crop Updates 2002 - Pulse Research And Industry Development In Western Australia, M. Harries, R. French, I. Pritchard, N. Brandon, N. Runciman, S. White, M. Seymour, P. White, J. Howieson, R. Yates, H. Dhammu, T. Piper, T. Khan, K. Regan, N. Suizu, D. Diepeveen, C. Veitch, J. Palta, A. Nandwal, N. Turner, H. Clarke, G. Dwyer, H. Loo, K. Siddique, M. Bellgard, M. Jones, Glen Riethmuller, B. Mcleod, R. Shackles, P. Smith, C. Francis, M. Bolland, M. Materne, J. Clements, C. Hanbury, R. Matic, M. Tate, B. Hughes, B. French, P. Rees, J. Galloway, M. Salam, A. Diggle, N. Burges, D. Wright, J. Hawkes, D. Thackray, R. Jones, O. Edwards, J. Ridsdill-Smith, R. Horbury, F. Berlandier, O. Byrne, D. Hardie, H. Sharma, M. De Sousa Majer, R. Roush, R. Morton, T. Higgins Feb 2002

Crop Updates 2002 - Pulse Research And Industry Development In Western Australia, M. Harries, R. French, I. Pritchard, N. Brandon, N. Runciman, S. White, M. Seymour, P. White, J. Howieson, R. Yates, H. Dhammu, T. Piper, T. Khan, K. Regan, N. Suizu, D. Diepeveen, C. Veitch, J. Palta, A. Nandwal, N. Turner, H. Clarke, G. Dwyer, H. Loo, K. Siddique, M. Bellgard, M. Jones, Glen Riethmuller, B. Mcleod, R. Shackles, P. Smith, C. Francis, M. Bolland, M. Materne, J. Clements, C. Hanbury, R. Matic, M. Tate, B. Hughes, B. French, P. Rees, J. Galloway, M. Salam, A. Diggle, N. Burges, D. Wright, J. Hawkes, D. Thackray, R. Jones, O. Edwards, J. Ridsdill-Smith, R. Horbury, F. Berlandier, O. Byrne, D. Hardie, H. Sharma, M. De Sousa Majer, R. Roush, R. Morton, T. Higgins

Crop Updates

This session covers seventy one papers from different authors:

1. 2001 PULSE INDUSTRY HIGHLIGHTS

CONTRIBUTORS

BACKGROUND

2001 REGIONAL ROUNDUP

2. Northern Agricultural Region, M. Harries, Department of Agriculture

3. Central Agricultural Region, R. French and I. Pritchard, Department of Agriculture

4. Great Southern and Lakes, N. Brandon, N. Runciman and S. White, Department of Agriculture

5. Esperance Mallee, M. Seymour, Department of Agriculture

PULSE PRODUCTION AGRONOMY AND GENETIC IMPROVEMENT

6. Faba bean, P. White, Department of Agriculture

7. Germplasm evaluation, P. White, M. Seymour and M. Harries, Department of Agriculture

8. Variety evaluation, P. White, M. Harries, N. Brandon …


Selected Soybean Plant Introductions With Partial Resistance To Sclerotinia Sclerotiorum, D. D. Hoffman, B. W. Diers, G. L. Hartman, C. D. Nickell, R. L. Nelson, W. L. Pedersen, E. R. Cober, George L. Graef, J. R. Steadman, C. R. Grau, B. D. Nelson, L. E. Del Rio, T. Helms, T. Anderson, V. Poysa, University Of Guelph, W. C. Stienstra Jan 2002

Selected Soybean Plant Introductions With Partial Resistance To Sclerotinia Sclerotiorum, D. D. Hoffman, B. W. Diers, G. L. Hartman, C. D. Nickell, R. L. Nelson, W. L. Pedersen, E. R. Cober, George L. Graef, J. R. Steadman, C. R. Grau, B. D. Nelson, L. E. Del Rio, T. Helms, T. Anderson, V. Poysa, University Of Guelph, W. C. Stienstra

Department of Plant Pathology: Faculty Publications

Sclerotinia stem rot, caused by Sclerotinia sclerotiorum, is a major soybean (Glycine max) disease in north-central regions of the United States and throughout the world. Current sources of resistance to Sclerotinia stem rot express partial resistance, and are limited in number within soybean germ plasm. A total of 6,520 maturity group (MG) 0 to IV plant introductions (PIs) were evaluated for Sclerotinia stem rot resistance in the United States and Canada in small plots or in the greenhouse from 1995 to 1997. Selected PIs with the most resistance were evaluated for resistance in the United States and …


Greenhouse And Field Evaluation Of Biological Control Of Fusarium Head Blight On Durum Wheat, D. A. Schisler, N. I. Khan, Michael J. Boehm, P. J. Slininger Jan 2002

Greenhouse And Field Evaluation Of Biological Control Of Fusarium Head Blight On Durum Wheat, D. A. Schisler, N. I. Khan, Michael J. Boehm, P. J. Slininger

Department of Plant Pathology: Faculty Publications

Fusarium head blight (FHB) is a devastating disease that causes extensive yield and quality losses to wheat and barley. In durum wheat, the pathogen-produced toxin deoxynivalenol (DON) is retained in semolina at ~50%, and the causal agent of FHB, Gibberella zeae, has a strong adverse effect on pasta color. Two bacteria and two yeast strains with known efficacy against G. zeae on hexaploid wheats were produced in liquid culture and assayed on two cultivars of durum wheat in greenhouse bioassays. All antagonists reduced FHB severity on cultivar Renville, and three of the four reduced severity on cultivar Ben, with …


The P23 Protein Of Citrus Tristeza Virus Controls Asymmetrical Rna Accumulation, Satyanarayana Tatineni, Siddarame Gowda, Maria A. Ayllon, Maria R. Albiach-Marti, Shailaja Rabindran, William O. Dawson Jan 2002

The P23 Protein Of Citrus Tristeza Virus Controls Asymmetrical Rna Accumulation, Satyanarayana Tatineni, Siddarame Gowda, Maria A. Ayllon, Maria R. Albiach-Marti, Shailaja Rabindran, William O. Dawson

Department of Plant Pathology: Faculty Publications

Citrus tristeza virus (CTV), a member of the Closteroviridae, has a 19.3-kb positive-stranded RNA genome that is organized into 12 open reading frames (ORFs) with the 10 3' genes expressed via a nested set of nine or ten 3'-coterminal subgenomic mRNAs (sgRNAs). Relatively large amounts of negative-stranded RNAs complementary to both genomic and sgRNAs accumulate in infected cells. As is characteristic of RNA viruses, wild-type CTV produced more positive than negative strands, with the plus-to-minus ratios of genomic and sgRNAs estimated at 10 to 20:1 and 40 to 50:1, respectively. However, a mutant with all of the 3' genes …


First Report Of Columbia Root Knot Nematode (Meloidogyne Chitwoodi) In Potato In Texas, A. L. Szalanski, P. G. Mullin, T. S. Harris, T. O. Powers Apr 2001

First Report Of Columbia Root Knot Nematode (Meloidogyne Chitwoodi) In Potato In Texas, A. L. Szalanski, P. G. Mullin, T. S. Harris, T. O. Powers

Department of Plant Pathology: Faculty Publications

Columbia root-knot nematode, Meloidogyne chitwoodi Golden et al. (1) was identified from potatoes, Solanum tuberosum L., collected from Dallam County, Texas in October 2000. Seed potatoes are the most likely source for this introduction. This nematode is currently found infecting potatoes grown in California, Colorado, Idaho, New Mexico, Nevada, Oregon, Utah, and Washington. Some countries prohibit import of both seed and table stock potatoes originating in states known to harbor M. chitwoodi. Lesions on the potatoes had discrete brown coloration with white central spots in the outer 1 cm of the tuber flesh. Female nematode densities averaged 3 per square …