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Articles 331 - 360 of 465
Full-Text Articles in Plant Breeding and Genetics
Origin Of The Polycomb Repressive Complex 2 And Gene Silencing By An E(Z) Homolog In The Unicellular Alga Chlamydomonas, Scott Shaver, J. Armando Casas-Mollano, Ronald L. Cerny, Heriberto D. Cerutti
Origin Of The Polycomb Repressive Complex 2 And Gene Silencing By An E(Z) Homolog In The Unicellular Alga Chlamydomonas, Scott Shaver, J. Armando Casas-Mollano, Ronald L. Cerny, Heriberto D. Cerutti
Center for Plant Science Innovation: Faculty Publications
Polycomb group proteins play an essential role in the maintenance of cell identity and the regulation of development in both animals and plants. The Polycomb Repressive Complex 2 (PRC2) is involved in the establishment of transcriptionally silent chromatin states, in part through its ability to methylate lysine 27 of histone H3 by the Enhancer of zeste [E(z)] subunit. The absence of PRC2 in unicellular model fungi and its function in the repression of genes vital for the development of higher eukaryotes led to the proposal that this complex may have evolved together with the emergence of multicellularity. However, we report …
The Pseudomonas Syringae Type Iii Effector Hopg1 Targets Mitochondria, Alters Plant Development, And Suppresses Plant Innate Immunity, Anna Block, Ming Guo, Guangyong Li, Christian Elowsky, Thomas Clemente, James R. Alfano
The Pseudomonas Syringae Type Iii Effector Hopg1 Targets Mitochondria, Alters Plant Development, And Suppresses Plant Innate Immunity, Anna Block, Ming Guo, Guangyong Li, Christian Elowsky, Thomas Clemente, James R. Alfano
Center for Plant Science Innovation: Faculty Publications
The bacterial plant pathogen Pseudomonas syringae uses a type III protein secretion system to inject type III effectors into plant cells. Primary targets of these effectors appear to be effector-triggered immunity (ETI) and pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI). The type III effector HopG1 is a suppressor of ETI that is broadly conserved in bacterial plant pathogens. Here we show that HopG1 from P. syringae pv. tomato DC3000 also suppresses PTI. Interestingly, HopG1 localizes to plant mitochondria, suggesting that its suppression of innate immunity may be linked to a perturbation of mitochondrial function. While HopG1 possesses no obvious mitochondrial signal …
Alkylresorcinol Synthases Expressed In Sorghum Bicolor Root Hairs Play An Essential Role In The Biosynthesis Of The Allelopathic Benzoquinone Sorgoleone, Daniel Cook, Agnes M. Rimando, Thomas E. Clemente, Joachim Schroder, Franck E. Dayan, N. P. Dhammika Nanayakkara, Zhiqiang Pan, Brice P. Noonan, Mark Fishbein, Ikuro Abe, Stephen O. Duke, Scott R. Baerson
Alkylresorcinol Synthases Expressed In Sorghum Bicolor Root Hairs Play An Essential Role In The Biosynthesis Of The Allelopathic Benzoquinone Sorgoleone, Daniel Cook, Agnes M. Rimando, Thomas E. Clemente, Joachim Schroder, Franck E. Dayan, N. P. Dhammika Nanayakkara, Zhiqiang Pan, Brice P. Noonan, Mark Fishbein, Ikuro Abe, Stephen O. Duke, Scott R. Baerson
Center for Plant Science Innovation: Faculty Publications
Sorghum bicolor is considered to be an allelopathic crop species, producing phytotoxins such as the lipid benzoquinone sorgoleone, which likely accounts for many of the allelopathic properties of Sorghum spp. Current evidence suggests that sorgoleone biosynthesis occurs exclusively in root hair cells and involves the production of an alkylresorcinolic intermediate (5-[(Z,Z)-8',11',14'-pentadecatrienyl]resorcinol) derived from an unusual 16:3D9,12,15 fatty acyl-CoA starter unit. This led to the suggestion of the involvement of one or more alkylresorcinol synthases (ARSs), type III polyketide synthases (PKSs) that produce 5-alkylresorcinols using medium to long-chain fatty acyl-CoA starter units via iterative condensations with malonyl-CoA. In an effort …
Crop Updates 2010 - Crop Specific, Hugh J. Beckie, Wallace Cowling, T. N. Khan, K. Adhikari, K. Siddique, J. Garlinge, L. Smith, S. Morgan, C. Boyd, Ian Pritchard, Chris Veitch, Alan Harris, Tony Leonforts, Murray Blyth, Shari Dougal, Kristy Hobson, Ben Curtis, Doug Sawkins, D. Stephens, Ciara Beard, Kith Jayasena, Kazue Tanaka, Anne Smith, Brenda Coutts, Roger Jones, Jean Galloway, Pip Payne, Tess Humphreys, William Macleod, Ravjit Khangura, M. Aberra, H. Mian, Geoff Thomas, Dusty Severtson, Peter Mangano, Monica Kehoe, Madeline A. Tucker, Neil Barker, Robert Loughman, Larisa Cato, Ken Quail, Mohammad Amjad, Mark Seymour, Justin Kudnig, Mark Thompson, Anton Mannes, Michael Uttley, Chris Fletcher, Andrew Etherton, Nick Joyce, Kate Light, Peter Hamblin, Michael Lamond, Alan Meldrum, Wayne Parker, Steve Penny Jr, Sarah Ellis, Brenda Shackley, Christine Zaicou, Shajahan Miyan, Darshan Sharma, Ben Curtis, Greg Shea, Bevan Buirchell, David Harris, Bob French
Crop Updates 2010 - Crop Specific, Hugh J. Beckie, Wallace Cowling, T. N. Khan, K. Adhikari, K. Siddique, J. Garlinge, L. Smith, S. Morgan, C. Boyd, Ian Pritchard, Chris Veitch, Alan Harris, Tony Leonforts, Murray Blyth, Shari Dougal, Kristy Hobson, Ben Curtis, Doug Sawkins, D. Stephens, Ciara Beard, Kith Jayasena, Kazue Tanaka, Anne Smith, Brenda Coutts, Roger Jones, Jean Galloway, Pip Payne, Tess Humphreys, William Macleod, Ravjit Khangura, M. Aberra, H. Mian, Geoff Thomas, Dusty Severtson, Peter Mangano, Monica Kehoe, Madeline A. Tucker, Neil Barker, Robert Loughman, Larisa Cato, Ken Quail, Mohammad Amjad, Mark Seymour, Justin Kudnig, Mark Thompson, Anton Mannes, Michael Uttley, Chris Fletcher, Andrew Etherton, Nick Joyce, Kate Light, Peter Hamblin, Michael Lamond, Alan Meldrum, Wayne Parker, Steve Penny Jr, Sarah Ellis, Brenda Shackley, Christine Zaicou, Shajahan Miyan, Darshan Sharma, Ben Curtis, Greg Shea, Bevan Buirchell, David Harris, Bob French
Crop Updates
This session covers twenty four papers from different authors:
PLENARY
1. Challenges facing western Canadian cropping over the next 10 years, Hugh J Beckie, Research Centre, Agriculture and Agri-Food Canada, Saskatoon,
Saskatchewan
CROP SPECIFIC
Breeding
2. The challenge of breeding canola hybrids – new opportunities for WA growers, Wallace Cowling, Research Director, Canola Breeders Western Australia Pty Ltd
3. Chickpea 2009 crop variety testing of germplasm developed by DAFWA/CLIMA/ICRISAT/COGGO alliance. Khan, TN1,3, Adhikari, K1,3, Siddique, K2, Garlinge, J1, Smith, L1, Morgan, S1 and Boyd, C1 1Department …
Turnover Of Mature Mirnas And Sirnas In Plants And Algae, Heriberto Cerutti, Fadia Ibrahim
Turnover Of Mature Mirnas And Sirnas In Plants And Algae, Heriberto Cerutti, Fadia Ibrahim
Center for Plant Science Innovation: Faculty Publications
rnicroRNAs (miRNAs) and small interfering RNAs (siRNAs) play important roles in gene regulation and defense responses against transposons and viruses in eukaryotes. These small RNAs generally trigger the silencing of cognate sequences through a variety of mechanisms, including RNA degradation, translational inhibition, and transcriptional repression. In the past few years, the synthesis and the mode of action of miRNAs and siRNAs have attracted great attention. However, relatively little is known about mechanisms of quality control during small RNA biogenesis as well as those that regulate mature small RNA stability. Recent studies in Arabidopsis thaliana and Caenorhahditis elegans have implicated 3′-to-5′ …
Translational Inhibition By Micrornas In Plants, Bin Yu, Hai Wang
Translational Inhibition By Micrornas In Plants, Bin Yu, Hai Wang
Center for Plant Science Innovation: Faculty Publications
MicroRNAs (miRNAs) are 21–24 nucleotide riboregulators, which selectively repress gene expression through transcript cleavage and/or translational inhibition. It was thought that most plant miRNAs act through target transcript cleavage due to the high degree of complementarity between miRNAs and their targets. However, recent studies have suggested widespread translational inhibition by miRNAs in plants. The mechanisms underlining translational inhibition by plant miRNAs are largely unknown, but existing evidence has indicated that plants and animals share some mechanistic similarity of translational inhibition. Translational inhibition by miRNAs has been shown to regulate floral patterning, floral timing, and stress responses. This chapter covers recent …
Insights Into The World Of Pea Nodulation Using The Low Nodulator R50, Scott Clemow
Insights Into The World Of Pea Nodulation Using The Low Nodulator R50, Scott Clemow
Theses and Dissertations (Comprehensive)
Cytokinin oxidase (CKX) is the enzyme responsible for the degradation of cytokinin, a class of adenine-based plant hormones that stimulate cell division, among other physiological processes. The pea mutant R50 is characterized by having a pale leaf phenotype, dwarf stature, few lateral roots, low nodule formation, and elevated levels of endogenous cytokinins in its shoots, roots and nodules. When compared to that of the wild-type Sparkle, total CKX activity is low but the transcript levels of PsCKX1 are significantly higher. In this study, I investigated the expression of PsCKX1 throughout the development of a nodule and the localization of PsCKX1 …
Morphogenesis And Tissue Culture Studies Of Gerbera Jamesonii Bolus Ex. Hook F., Nor Azlina Hasbullah
Morphogenesis And Tissue Culture Studies Of Gerbera Jamesonii Bolus Ex. Hook F., Nor Azlina Hasbullah
Student Works (2010-2019)
In vitro regeneration of Gerbera jamesonii Bolus ex. Hook f. was successfully carried out in this study. Petiole and leaf explants from 8-week-old aseptic seedlings were used as source of explants. Different response was observed when different explants were cultured on the culture media. MS (Murashige and Skoog, 1962) supplemented with 2.0 mg/l BAP and 0.5 mg/l NAA was identified as the optimum medium for shoot regeneration, while petiole explant was identified as the most responsive explant in this study. Petiole explants regenerated shoots (94.3 } 2.5 %) and produced 9.3 } 0.6 shoots per explant. MS basal medium was …
Molecular Characterization And Expression Analysis Of Putative Rpk1 And Putative Clv1 In Malaysian Indica Rice (Oryza Sativa L.) Cv.Mr219 And Malaysian Wild Rice (Oryza Rufipogon) Irgc105491., Law Yee Song
Student Works (2010-2019)
Two candidate yield-related genes, putative Receptor-like Protein Kinase 1 (putative RPK1) and putative CLAVATA1 Receptor Kinase (putative CLV1), were selected for molecular characterization and expression analysis. This was carried out using in four rice lines comprising the parents and two BC2F7 lines from a local rice breeding program, with Malaysian rice variety, Oryza sativa ssp. indica cv. MR219 as recurrent parent, and Oryza rufipogon (IRGC105491) as donor parent. Approximately 2.8 kb and 2.6 kb putative RPK1 cDNA nucleotide sequences were obtained from Oryza rufipogon and Oryza sativa ssp. indica cv. MR219 respectively. However, only 402 …
Crop Updates 2009 - Cereals, Jeff Baldock, Doug Edmeades, Mark Seymour, Paul Carmody, Ian Pritchard, Alan Meldrum, Michael Robertson, Roger Lawes, Rob Sands, Peter White, Felicity Byrne, Andrew Bathgate, Kedar Adhikari, Tanveer Khan, Stuart Morgan, Alan Harris, P. Gaur, K. M. H. Siddique, H. Clarke, N. C. Turner, W. Macleod, S. Morgan, Chris Veitch, Tony Leonforte, Kithsiri Jayasena, Geoff J. Thomas, Rob Loughman, Kazue Tanaka, Ravjit Khangura, Mohammad Amjad, Richard Oliver, Dusty Severtson, Peter Mangano, John Botha, Brenda A. Coutts, Manisha Shankar, Kasia Rybak, Michael Baker, Andrea Hills, Shahajahan Miyan, Peter Portmann, Nicole Rice, Robert Henry, Jeff Russell, Blakely H. Paynter, Linda Price, Brenda Shackley, Vicki Scanlan, Darshan Sharma, Christine M. Zaicou-Kunesch
Crop Updates 2009 - Cereals, Jeff Baldock, Doug Edmeades, Mark Seymour, Paul Carmody, Ian Pritchard, Alan Meldrum, Michael Robertson, Roger Lawes, Rob Sands, Peter White, Felicity Byrne, Andrew Bathgate, Kedar Adhikari, Tanveer Khan, Stuart Morgan, Alan Harris, P. Gaur, K. M. H. Siddique, H. Clarke, N. C. Turner, W. Macleod, S. Morgan, Chris Veitch, Tony Leonforte, Kithsiri Jayasena, Geoff J. Thomas, Rob Loughman, Kazue Tanaka, Ravjit Khangura, Mohammad Amjad, Richard Oliver, Dusty Severtson, Peter Mangano, John Botha, Brenda A. Coutts, Manisha Shankar, Kasia Rybak, Michael Baker, Andrea Hills, Shahajahan Miyan, Peter Portmann, Nicole Rice, Robert Henry, Jeff Russell, Blakely H. Paynter, Linda Price, Brenda Shackley, Vicki Scanlan, Darshan Sharma, Christine M. Zaicou-Kunesch
Crop Updates
This session covers twenty seven papers from different authors:
PLENARY
1. Building soil carbon for productivity and implications for carbon accounting, Jeff Baldock, CSIRO Land and Water, Adelaide, SA
2. Fact or Fiction: Who is telling the truth and how to tell the difference, Doug Edmeades, agKnowledge Ltd, Hamilton
3. Four decades of crop sequence trials in Western Australia, Mark Seymour,Department of Agriculture and Food
BREAK CROPS
4. 2008 Break Crops survey Report, Paul Carmody,Development Officer, Department of Agriculture and Food
5. Attitudes of Western Australian wheatbelt growers to ‘Break Crops’, Paul Carmody and Ian …
Current And Potential Distributions Of Three Non-Native Invasive Plants In The Contiguous Usa, Chad C. Jones, Sarah Reichard
Current And Potential Distributions Of Three Non-Native Invasive Plants In The Contiguous Usa, Chad C. Jones, Sarah Reichard
Botany Faculty Publications
Biological invasions pose a serious threat to biodiversity, but monitoring for invasive species is time consuming and costly. Understanding where species have the potential to invade enables land managers to focus monitoring efforts. In this paper, we compared two simple types of models to predict the potential distributions of three non-native invasive plants (Geranium robertianum, Hedera spp., and Ilex aquifolium) in the contiguous USA. We developed models based on the climatic requirements of the species as reported in the literature (literature-based) and simple climate envelope models based on the climate where the species already occur (observation-based). We then compared the …
Roadmap For Future Research On Plant Pathogen Effectors, James R. Alfano
Roadmap For Future Research On Plant Pathogen Effectors, James R. Alfano
Center for Plant Science Innovation: Faculty Publications
Bacterial and eukaryotic plant pathogens deliver effector proteins into plant cells to promote pathogenesis. Bacterial pathogens containing type III protein secretion systems are known to inject many of these effectors into plant cells. More recently, oomycete pathogens have been shown to possess a large family of effectors containing the RXLR motif, and many effectors are also being discovered in fungal pathogens. Although effector activities are largely unknown, at least a subset suppress plant immunity. A plethora of new plant pathogen genomes that will soon be available thanks to next-generation sequencing technologies will allow the identification of many more effectors. This …
Histone H3 Phosphorylation: Universal Code Or Lineage Specific Dialects?, Heriberto Cerutti, J. Armando Casas-Mollano
Histone H3 Phosphorylation: Universal Code Or Lineage Specific Dialects?, Heriberto Cerutti, J. Armando Casas-Mollano
Center for Plant Science Innovation: Faculty Publications
Post-translational modifications of histones modulate the functional landscape of chromatin and impinge on many DNA-mediated processes. Phosphorylation of histone H3 plays a role in the regulation of gene expression and in chromosome condensation/segregation. Certain evolutionarily conserved residues on histone H3—namely Thr3, Ser10, Thr11, and Ser28—are phosphorylated during interphase or mitosis in both metazoa and plants. However, many of the kinases involved in these events appear to have evolved independently in different lineages. Likewise, the mechanistic function of specific phosphorylated amino acids, although poorly understood, also seems to differ among eukaryotes. Moreover, some modifications, such as phosphorylation of histone H3 Ser10, …
Protein-Protein Interactions Of Tandem Affinity Purified Protein Kinases From Rice, Jai S. Rohila, Mei Chen, Shuo Chen, Johann Chen, Ronald L. Cerny, Christopher Dardick, Patrick Canlas, Hiroaki Fujii, Michael Gribskov, Siddhartha Kanrar, Lucas Knoflicek, Becky Stevenson, Mingtang Xie, Xia Xu, Xianwu Zheng, Jing-Kang Zhu, Pamela Ronald, Michael E. Fromm
Protein-Protein Interactions Of Tandem Affinity Purified Protein Kinases From Rice, Jai S. Rohila, Mei Chen, Shuo Chen, Johann Chen, Ronald L. Cerny, Christopher Dardick, Patrick Canlas, Hiroaki Fujii, Michael Gribskov, Siddhartha Kanrar, Lucas Knoflicek, Becky Stevenson, Mingtang Xie, Xia Xu, Xianwu Zheng, Jing-Kang Zhu, Pamela Ronald, Michael E. Fromm
Center for Plant Science Innovation: Faculty Publications
Eighty-eight rice (Oryza sativa) cDNAs encoding rice leaf expressed protein kinases (PKs) were fused to a Tandem Affinity Purification tag (TAP-tag) and expressed in transgenic rice plants. The TAP-tagged PKs and interacting proteins were purified from the T1 progeny of the transgenic rice plants and identified by tandem mass spectrometry. Forty-five TAPtagged PKs were recovered in this study and thirteen of these were found to interact with other rice proteins with a high probability score. In vivo phosphorylated sites were found for three of the PKs. A comparison of the TAP-tagged data from a combined analysis of 129 …
Participation Of Leaky Ribosome Scanning In Protein Dual Targeting By Alternative Translation Initiation In Higher Plants, Yashitola Wamboldt, Saleem Mohammed, Christian Elowsky, Chris Wittgren, Wilson B. M. De Paula, Sally Ann Mackenzie
Participation Of Leaky Ribosome Scanning In Protein Dual Targeting By Alternative Translation Initiation In Higher Plants, Yashitola Wamboldt, Saleem Mohammed, Christian Elowsky, Chris Wittgren, Wilson B. M. De Paula, Sally Ann Mackenzie
Center for Plant Science Innovation: Faculty Publications
Postendosymbiotic evolution has given rise to proteins that are multiply targeted within the cell. Various mechanisms have been identified to permit the expression of proteins encoding distinct N termini from a single gene. One mechanism involves alternative translation initiation (aTI). We previously showed evidence of aTI activity within the Arabidopsis thaliana organellar DNA polymerase gene POLg2. Translation initiates at four distinct sites within this gene, two non-AUG, to produce distinct plastid and mitochondrially targeted forms of the protein. To understand the regulation of aTI in higher plants, we used Polg2 as a model to investigate both cis- and trans …
Intergenic Transcription By Rna Polymerase Ii Coordinates Pol Iv And Pol V In Sirna-Directed Transcriptional Gene Silencing In Arabidopsis, Binglian Zheng, Zhengming Wang, Shengben Li, Bin Yu, Jin -Yuan Liu, Xuemei Chen
Intergenic Transcription By Rna Polymerase Ii Coordinates Pol Iv And Pol V In Sirna-Directed Transcriptional Gene Silencing In Arabidopsis, Binglian Zheng, Zhengming Wang, Shengben Li, Bin Yu, Jin -Yuan Liu, Xuemei Chen
Center for Plant Science Innovation: Faculty Publications
Intergenic transcription by RNA Polymerase II (Pol II) is widespread in plant and animal genomes, but the functions of intergenic transcription or the resulting noncoding transcripts are poorly understood. Here, we show that Arabidopsis Pol II is indispensable for endogenous siRNA-mediated transcriptional gene silencing (TGS) at intergenic low-copy-number loci, despite the presence of two other polymerases—Pol IV and Pol V—that specialize in TGS through siRNAs. We show that Pol II produces noncoding scaffold transcripts that originate outside of heterochromatic, siRNA-generating loci. Through these transcripts and physical interactions with the siRNA effector protein ARGONAUTE4 (AGO4), Pol II recruits AGO4/siRNAs to homologous …
Letter From The Dean, Lalit Verma
Letter From The Dean, Lalit Verma
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Plan To Support Grains Industry Development 2009-2012, Department Of Agriculture And Food, Western Australia
Plan To Support Grains Industry Development 2009-2012, Department Of Agriculture And Food, Western Australia
Grain and other field crops published reports
The Plan to Support Grains Industry Development (‘the Plan’) recognises that Western Australian agricultural industries are integral to the economic wellbeing of regional and rural communities. The Plan promotes a progressive and profitable grains industry through modern best practice services and research to enhance continuous improvement in farming and supply chain practices.
The Plan has been developed to align with the Government of Western Australia’s initiatives, strategies and tactics for ‘making every hectare count’ (see Appendix 1) and with grains industry needs as identified by industry stakeholders during a series of consultation forums. These industry needs will be addressed in …
Genetic Diversity In Native And Invasive Rubus (Rosaceae), Ashley A. Wint
Genetic Diversity In Native And Invasive Rubus (Rosaceae), Ashley A. Wint
Masters Theses & Specialist Projects
Invasive species are an increasing threat to biological diversity as well as a leading cause of recent species’ extinctions. Invasives spread quickly and efficiently, and the U.S spends millions of dollars annually in the control and eradication of these species. More information is necessary in order to predict which species may become invasive. Rubus (Rosaceae) was chosen for study because this genus includes various ploidy levels, reproductive modes, and species that are invasive as well as native.
Three Rubus species were chosen to represent apomictic and tetraploid invasives (Rubus armeniacus), a sexual and diploid native species (R. occidentalis), and a …
Phytopathogen Type Iii Effector Weaponry And Their Plant Targets, Anna Block, Guangyong Li, Zheng Qing Fu, James R. Alfano
Phytopathogen Type Iii Effector Weaponry And Their Plant Targets, Anna Block, Guangyong Li, Zheng Qing Fu, James R. Alfano
Center for Plant Science Innovation: Faculty Publications
Phytopathogenic bacteria suppress plant innate immunity and promote pathogenesis by injecting proteins called type III effectors into plant cells using a type III protein secretion system. These type III effectors use at least three major strategies to alter host responses. One strategy is to alter host protein turnover, either by direct cleavage or by modulating ubiquitination and targeting to the 26S proteasome. Another strategy involves alteration of RNA metabolism by transcriptional activation or ADP-ribosylation of RNA-binding proteins. A third major strategy is to inhibit the kinases involved in plant defence signalling, either by removing phosphates or by direct inhibition. The …
Nectar Secondary Compounds Affect Self-Pollen Transfer: Implications For Female And Male Reproduction, Rebecca E. Irwin, Lynn S. Adler
Nectar Secondary Compounds Affect Self-Pollen Transfer: Implications For Female And Male Reproduction, Rebecca E. Irwin, Lynn S. Adler
Dartmouth Scholarship
Pollen movement within and among plants affects inbreeding, plant fitness, and the spatial scale of genetic differentiation. Although a number of studies have assessed how plant and floral traits influence pollen movement via changes in pollinator behavior, few have explored how nectar chemical composition affects pollen transfer. As many as 55% of plants produce secondary compounds in their nectar, which is surprising given that nectar is typically thought to attract pollinators. We tested the hypothesis that nectar with secondary compounds may benefit plants by encouraging pollinators to leave plants after visiting only a few flowers, thus reducing self-pollen transfer. We …
The Complete Plastid Genome Sequence Of Welwitschia Mirabilis: An Unusually Compact Plastome With Accelerated Divergence Rates, Skip R. Mccoy, Jennifer V. Kuehl, Jeffrey L. Boore, Linda A. Raubeson
The Complete Plastid Genome Sequence Of Welwitschia Mirabilis: An Unusually Compact Plastome With Accelerated Divergence Rates, Skip R. Mccoy, Jennifer V. Kuehl, Jeffrey L. Boore, Linda A. Raubeson
All Faculty Scholarship for the College of the Sciences
Background
Welwitschia mirabilis is the only extant member of the family Welwitschiaceae, one of three lineages of gnetophytes, an enigmatic group of gymnosperms variously allied with flowering plants or conifers. Limited sequence data and rapid divergence rates have precluded consensus on the evolutionary placement of gnetophytes based on molecular characters. Here we report on the first complete gnetophyte chloroplast genome sequence, from Welwitschia mirabilis, as well as analyses on divergence rates of protein-coding genes, comparisons of gene content and order, and phylogenetic implications.
Results
The chloroplast genome of Welwitschia mirabilis [GenBank: EU342371] is comprised of 119,726 base pairs and exhibits …
Crop Updates 2008 - Lupins, Pulses And Oilseeds, Mark Seymour, Robert Johnson, Ian Pritchard, Raj Malik, Wayne Parker, Martin Harries, Robert French, Jo Walker, Laurie Maiolo, Leigh Smith, Alan Harris, Rod Hunter, Tanveer Khan, Jenny Garlinge, Pooran Gaur, Kambot Siddique, Heather Clarke, Neil Turner, William Macleod, Stuart Morgan, Wendy Vance, Philip Chambers, Chris Veitch, Tony Leonforte, Rodger Beermier, Moin U. Salam, Jenny Davidson, Jean Galloway, Pip Payne, Tess Humphries, Art Diggle, Harmohinder Dhammu, Michael Materne, Kerry Regan, Mohammad Amjad, Andy Sutherland, Pat Fels, Glen Riethmuller, Wallace Cowling, Milton Saunders, Eliot Jones, Chris Newman, John Duff, David Sermon, Svetlana Micic, Anthony Dore, Geoff Strickland, Blakely Paynter, Vince Lambert, Chris Roberts
Crop Updates 2008 - Lupins, Pulses And Oilseeds, Mark Seymour, Robert Johnson, Ian Pritchard, Raj Malik, Wayne Parker, Martin Harries, Robert French, Jo Walker, Laurie Maiolo, Leigh Smith, Alan Harris, Rod Hunter, Tanveer Khan, Jenny Garlinge, Pooran Gaur, Kambot Siddique, Heather Clarke, Neil Turner, William Macleod, Stuart Morgan, Wendy Vance, Philip Chambers, Chris Veitch, Tony Leonforte, Rodger Beermier, Moin U. Salam, Jenny Davidson, Jean Galloway, Pip Payne, Tess Humphries, Art Diggle, Harmohinder Dhammu, Michael Materne, Kerry Regan, Mohammad Amjad, Andy Sutherland, Pat Fels, Glen Riethmuller, Wallace Cowling, Milton Saunders, Eliot Jones, Chris Newman, John Duff, David Sermon, Svetlana Micic, Anthony Dore, Geoff Strickland, Blakely Paynter, Vince Lambert, Chris Roberts
Crop Updates
This session covers twenty six papers from different authors:
Regional Roundup
1. SOUTH EAST AGRICULTURAL REGION, Mark Seymour Department of Agriculture and Food, and Robert Johnson CBH Group, Esperance
2. CENTRAL AGRICULTURAL REGION, Ian Pritchard, Department of Agriculture and Food
3. GREAT SOUTHERN AND LAKES REGION, Raj Malik, Department of Agriculture and Food
4. NORTHERN AGRICULTURAL REGION, Wayne Parker and Martin Harries, Department of Agriculture and Food
LUPINS
5. Cropping lupins in wide rows in Western Australia, Martin Harries and Bob French, Department of Agriculture and Food
6. The effect of sowing time and radish density …
Crop Updates 2008 - Farming Systems, John De Majnik, Paul Meibusch, Vince Logan, Louise Barton, Wahid Biswas, Daniel Carter, Nicolyn Short, Jodie Bowling, Glen Riethmuller, James Fisher, Moin Salam, Stephen Davies, Jim Dixon, Dennis Van Gool, Alison Slade, Bob Gilkes, Megan Abrahams, Caroline Peek, Daniel Gardiner, Kari-Lee Falconer, David Hall, Jeromy Lemon, Harvey Jones, Yvette Oliver, Tania Butler, Michael Robertson, Stephen Carr, Chris Gazey, David York, Joel Andrews, Michael Simeoni, G. Peter Mangano, Svetlana Micic, Dave Gartner, Adam Clune, Matthew Morell, Adam Umbers, Angelo Loi, Brad Nutt, Clinton Revell, Geoff Kew, Vivien Vanstone, Ali Bhatti, Ming Pei You, Imma Farre, Bill Bowden, Henry Smolinski, Jane Speijers, John Bruce, David Mccarthy, Gary Lang, David Rees, Rob Grima, John Young, Ross Kingwell, Chris Oldham, Derk Bakker, Ian Foster, David Beard, Wen Chen, Richard Bell, Ross Brennan, Art Diggle, Reg Lunt, Qifu Ma, Zed Rengel, Tim Hilder, Dusty Severtson, Shahajahan Miyan, Sam Clune, Barb Sage, Tenielle Martin, Chris Newman, Neal Dalgliesh, Caroline Peak, Andrew Blake, Megan Ryan, Richard Bennett, Tim Colmer, D. Real, Jiyan Pang, Lori Kroiss, Dion Nicol, Tammy Edmonds-Tibbett, Ron Mctaggart, Sean Kelly, Helen Hunter
Crop Updates 2008 - Farming Systems, John De Majnik, Paul Meibusch, Vince Logan, Louise Barton, Wahid Biswas, Daniel Carter, Nicolyn Short, Jodie Bowling, Glen Riethmuller, James Fisher, Moin Salam, Stephen Davies, Jim Dixon, Dennis Van Gool, Alison Slade, Bob Gilkes, Megan Abrahams, Caroline Peek, Daniel Gardiner, Kari-Lee Falconer, David Hall, Jeromy Lemon, Harvey Jones, Yvette Oliver, Tania Butler, Michael Robertson, Stephen Carr, Chris Gazey, David York, Joel Andrews, Michael Simeoni, G. Peter Mangano, Svetlana Micic, Dave Gartner, Adam Clune, Matthew Morell, Adam Umbers, Angelo Loi, Brad Nutt, Clinton Revell, Geoff Kew, Vivien Vanstone, Ali Bhatti, Ming Pei You, Imma Farre, Bill Bowden, Henry Smolinski, Jane Speijers, John Bruce, David Mccarthy, Gary Lang, David Rees, Rob Grima, John Young, Ross Kingwell, Chris Oldham, Derk Bakker, Ian Foster, David Beard, Wen Chen, Richard Bell, Ross Brennan, Art Diggle, Reg Lunt, Qifu Ma, Zed Rengel, Tim Hilder, Dusty Severtson, Shahajahan Miyan, Sam Clune, Barb Sage, Tenielle Martin, Chris Newman, Neal Dalgliesh, Caroline Peak, Andrew Blake, Megan Ryan, Richard Bennett, Tim Colmer, D. Real, Jiyan Pang, Lori Kroiss, Dion Nicol, Tammy Edmonds-Tibbett, Ron Mctaggart, Sean Kelly, Helen Hunter
Crop Updates
This session covers thirty nine papers from different authors:
PLENARY
1. Developments in grain end use, Dr John de Majnik, New Grain Products, GRDC, Mr Paul Meibusch, New Farm Products and Services, GRDC, Mr Vince Logan, New Products Executive Manager, GRDC
PRESENTATIONS
2. Global warming potential of wheat production in Western Australia: A life cycle assessment, Louise Barton1, Wahid Biswas2 and Daniel Carter3, 1School of Earth & Geographical Sciences, The University of Western Australia, 2Centre of Excellence in Cleaner Production, Division of Science and Engineering, Curtin University of Technology, 3Department of Agriculture and …
Crop Updates 2008 - Cereals, Christine M. Zaicou-Kunesch, Shahajahan Miyan, Brenda Shackley, Steve Penny, Sarah Ellis, Darshan Sharma, Blakely Paynter, Jeff Russell, Andrea Hills, Glen Riethmuller, Bill Bowden, Paul Blackwell, Harmohinder Dhammu, Vince Lambert, Chris Roberts, David Cox, Sally Cox, Jeremy Lemon, Paul Damon, Zed Rengel, Geoff J. Thomas, Ciara Beard, Anne Smith, Kithsiri Jayasena, Sean Kelly, Rob Loughman, Bill Macleod, Raj Malik, Ravjit Khangura, Vivien Vanstone, Colin Hanbury, Mehreteab Aberra, Gordon Masnish, Brenda A. Coutts, Geoff Strickland, Monica Kehoe, Dustin Severtson, Roger A C Jones, Dominie Wright, Megan Jordan, Xinhua He, Eli Manyol, Song-Ai Nio, Imran Malik, Tina Botwright-Acuña, Len Wade, Nigel Metz, Linda Price, Dean A. Diepeveen, Leisa Armstrong, Peter Clarke, Doug Abrecht, Rudi Appels, Matthew Bellgard
Crop Updates 2008 - Cereals, Christine M. Zaicou-Kunesch, Shahajahan Miyan, Brenda Shackley, Steve Penny, Sarah Ellis, Darshan Sharma, Blakely Paynter, Jeff Russell, Andrea Hills, Glen Riethmuller, Bill Bowden, Paul Blackwell, Harmohinder Dhammu, Vince Lambert, Chris Roberts, David Cox, Sally Cox, Jeremy Lemon, Paul Damon, Zed Rengel, Geoff J. Thomas, Ciara Beard, Anne Smith, Kithsiri Jayasena, Sean Kelly, Rob Loughman, Bill Macleod, Raj Malik, Ravjit Khangura, Vivien Vanstone, Colin Hanbury, Mehreteab Aberra, Gordon Masnish, Brenda A. Coutts, Geoff Strickland, Monica Kehoe, Dustin Severtson, Roger A C Jones, Dominie Wright, Megan Jordan, Xinhua He, Eli Manyol, Song-Ai Nio, Imran Malik, Tina Botwright-Acuña, Len Wade, Nigel Metz, Linda Price, Dean A. Diepeveen, Leisa Armstrong, Peter Clarke, Doug Abrecht, Rudi Appels, Matthew Bellgard
Crop Updates
This session covers twenty four papers from different authors:
WHEAT AGRONOMY
1. Wheat variety performance in the Northern Agricultural Region in 2007, Christine Zaicou, Department of Agriculture and Food
2. Wheat variety performance on the Central Agricultural Region in 2007, Shahajahan Miyan, Department of Agriculture and Food
3. Response of wheat varieties to sowing time in the Great Southern and Lakes Region in 2007, Brenda Shackley and Steve Penny, Department of Agriculture and Food
4. Wheat variety performance in the South Coastal Region in 2007, Sarah Ellis, Department of Agriculture and Food
5. Flowering dates of wheat varieties in Western …
The Small Glycine-Rich Rna Binding Protein Atgrp7 Promotes Floral Transition In Arabidopsis Thaliana, Corinna Streitner, Selahattin Danisman, Franziska Wehrle, Jan C. Schoning, James R. Alfano, Dorothee Staiger
The Small Glycine-Rich Rna Binding Protein Atgrp7 Promotes Floral Transition In Arabidopsis Thaliana, Corinna Streitner, Selahattin Danisman, Franziska Wehrle, Jan C. Schoning, James R. Alfano, Dorothee Staiger
Center for Plant Science Innovation: Faculty Publications
The RNA binding protein AtGRP7 is part of a circadian slave oscillator in Arabidopsis thaliana that negatively autoregulates its own mRNA, and affects the levels of other transcripts. Here, we identify a novel role for AtGRP7 as a flowering-time gene. An atgrp7-1 T-DNA mutant flowers later than wild-type plants under both long and short days, and independent RNA interference lines with reduced levels of AtGRP7, and the closely related AtGRP8 protein, are also late flowering, particularly in short photoperiods. Consistent with the retention of a photoperiodic response, the transcript encoding the key photoperiodic regulator CONSTANS oscillates with a similar pattern …
Mullewa Research Annexe Spring Field Day Future Farming Systems For North-Eastern Districts 21 August 2008, Department Of Agriculture, Western Australia
Mullewa Research Annexe Spring Field Day Future Farming Systems For North-Eastern Districts 21 August 2008, Department Of Agriculture, Western Australia
Grain and other field crops research reports
Papers:
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Mullewa Research Annexe activities 2008
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Wheat for today and the future
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Consequences of strongly acidic and alkaline soils
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Break crop influence on low rainfall heavy soil
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Chemical fallow options for the north-east agricultural region
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Herbicide tolerance of new wheat varieties
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Lowrainfall oilseed crops for food and biofuel
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Utilising stock to reduce business risk in Binnu! A case study
Anther Appendages Of Incarvillea Trigger A Pollen-Dispensing Mechanism, Yi Han, Can Dai, Chun-Feng Yang, Qing-Feng Wang, Timothy J. Motley
Anther Appendages Of Incarvillea Trigger A Pollen-Dispensing Mechanism, Yi Han, Can Dai, Chun-Feng Yang, Qing-Feng Wang, Timothy J. Motley
Biological Sciences Faculty Publications
Background and Aims Anther appendages play diverse roles in anther dehiscence and pollen dispersal. This study aims to explore the pollen-dispensing mechanism triggered by special anther appendages in Incarvillea arguta.
Methods Field studies were conducted to record floral characteristics, pollinator visitations, and flower-pollinator interactions. Measurements of flowers and pollinators were analysed statistically. Pollen counts following a series of floral manipulations were used to evaluate pollen dispensing efficiency and function of the anther appendages.
Key Results Field observations determined that two species of Bombus (bumble-bees) were the primary pollinators of I. arguta with a mean visiting frequency of 1.42 visitations …
Australian Temperate Strawberry Breeding Program (Albany Western Australia) Screening Of Advance And New Selections For Albany Western Australia - 2006/2007, Shane Trainer, Dennis Phillips, Hal
Australian Temperate Strawberry Breeding Program (Albany Western Australia) Screening Of Advance And New Selections For Albany Western Australia - 2006/2007, Shane Trainer, Dennis Phillips, Hal
Horticulture research reports
Fourteen intermediate day neutral selections from the Australian temperate breeding program were compared in a June trial planting on a commercial property in the Albany region. Intermediate selections were derived from crosses made between 1999 and 2002. Three advanced 'short day' selections were compared for yield, both as trial plots (10 plants) and as large plot demonstrations of up to 500 plants. Accompanying these selections, six named day neutral, three short day and four Queensland cultivars of different runner origins were compared. Camarosa, Selva and Diamante were included as commercial controls.
Day neutral selections 02-083-24 and 02-83-311 were potentially superior …
Comparative Chloroplast Genomics: Analyses Including New Sequences From The Angiosperms Nuphar Advena And Ranunculus Macranthus, Linda A. Raubeson, Rhiannon Peery, Timothy W. Chumley, Chris Dziubek, H. Matthew Fourcade, Jeffrey L. Boore, Robert K. Jansen
Comparative Chloroplast Genomics: Analyses Including New Sequences From The Angiosperms Nuphar Advena And Ranunculus Macranthus, Linda A. Raubeson, Rhiannon Peery, Timothy W. Chumley, Chris Dziubek, H. Matthew Fourcade, Jeffrey L. Boore, Robert K. Jansen
All Faculty Scholarship for the College of the Sciences
Background
The number of completely sequenced plastid genomes available is growing rapidly. This array of sequences presents new opportunities to perform comparative analyses. In comparative studies, it is often useful to compare across wide phylogenetic spans and, within angiosperms, to include representatives from basally diverging lineages such as the genomes reported here: Nuphar advena (from a basal-most lineage) and Ranunculus macranthus (a basal eudicot). We report these two new plastid genome sequences and make comparisons (within angiosperms, seed plants, or all photosynthetic lineages) to evaluate features such as the status of ycf15 and ycf68 as protein coding genes, the distribution …