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Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

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Full-Text Articles in Plant Biology

Nasa’S Ecostress Satellite Reveals Widespread Midday Depression In Ecosystem Evapotranspiration, Jingyi Bu, Jingfeng Xiao, Joshua B. Fisher, Yiqi Luo Aug 2026

Nasa’S Ecostress Satellite Reveals Widespread Midday Depression In Ecosystem Evapotranspiration, Jingyi Bu, Jingfeng Xiao, Joshua B. Fisher, Yiqi Luo

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Plants often exhibit a midday depression in water use (i.e., transpiration), reflecting a constraint on their ability to sustain maximum water transport, which may occur at the cost of reduced photosynthesis. Eddy covariance observations and geostationary satellites cannot quantify this widespread phenomenon globally while resolving fine-scale spatial variability. Using evapotranspiration measurements from the ECOsystem Spaceborne Thermal Radiometer Experiment on Space Station (ECOSTRESS) and machine learning, we quantify the global distribution of midday depression in evapotranspiration. Midday depression primarily occurs during peak-growing seasons in temperate zones and dry periods in the tropics, with a morning shift of the peak evapotranspiration time …


Optimizing Plant Nutrient Uptake: Cost Function Sensitivity Analysis Of The Fun Model, Gabriel Alpay, Joshua B. Fisher, Renato K. Braghiere, Edward R. Brzostek, Gabriella R. Dauber, Kara Allen, Rosemary A. Fisher Sep 2025

Optimizing Plant Nutrient Uptake: Cost Function Sensitivity Analysis Of The Fun Model, Gabriel Alpay, Joshua B. Fisher, Renato K. Braghiere, Edward R. Brzostek, Gabriella R. Dauber, Kara Allen, Rosemary A. Fisher

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

This study explores the cost functions of the Fixation & Uptake of Nutrients (FUN) model, which aims to optimize the amount of carbon used when plants acquire their necessary nutrients from the soil to maximize nitrogen (N) and phosphorus (P) uptake while minimizing the carbon cost. Specifically, we aimed to quantify the sensitivity of FUN outputs to the parameters belonging to the cost of nitrogen and phosphorus uptake functions by arbuscular mycorrhizal and ectomycorrhizal fungi. We present three dimensions of sensitivity analysis: (1) adjusting all parameters at the same time; (2) keeping one parameter constant while varying the other; and, …


Does Green Stem Photosynthesis Affect Plant Drought Tolerance And Recovery In Avocado?, Nadia A. Valverdi, Paula Guzmán-Delgado, Gregory R. Goldsmith, Eleinis Ávila-Lovera Aug 2025

Does Green Stem Photosynthesis Affect Plant Drought Tolerance And Recovery In Avocado?, Nadia A. Valverdi, Paula Guzmán-Delgado, Gregory R. Goldsmith, Eleinis Ávila-Lovera

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Woody plants with green stems may have advantages over non-green-stemmed plants in that extra photosynthetic carbon gain has the potential to improve plant drought tolerance and aid drought recovery. However, most studies relating to green stem photosynthesis and drought tolerance have been conducted on non-horticultural plants under natural growing conditions. We investigated whether avocado green stem photosynthesis enhances drought tolerance and recovery. We applied light exclusion and drought treatments to 3-year-old potted trees of cultivars ‘Hass’ and ‘Fuerte’. Measurements of soil moisture, midday stem water potential, stem photosynthesis, bark chlorophyll concentration, concentration of sugars + starch and stem hydraulic conductivity …


Climate And Shared Evolutionary History Drive Trait Variation Among Species Of Neotropical Understory Monocots, Eleinis Ávila-Lovera, Oscar M. Vargas, Jennifer L. Funk, Kathleen M. Kay, Gregory R. Goldsmith Jun 2024

Climate And Shared Evolutionary History Drive Trait Variation Among Species Of Neotropical Understory Monocots, Eleinis Ávila-Lovera, Oscar M. Vargas, Jennifer L. Funk, Kathleen M. Kay, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Environmental variation commonly drives functional trait diversity within species, among species, and across communities. Climate and shared evolutionary history can both influence trait–environment relationships. We studied variation in plant functional traits among closely related Costus species occurring across environmental gradients, the extent to which this variation occurs within single species, and how that variation may be influenced by shared evolutionary history. We measured leaf, aboveground stem, rhizome, and fine root traits of 17 species of Costus in eight sites in Costa Rica and Panama, which varied in elevation, temperature, and precipitation. We then assessed the relationships among traits and environmental …


Toward A Coordinated Understanding Of Hydro-Biogeochemical Root Functions In Tropical Forests For Application In Vegetation Models, Daniela F. Cusack, Bradley Christoffersen, Chris M. Smith-Martin, Kelly M. Andersen, Amanda L. Cordeiro, Katrin Fleischer, S. Joseph Wright, Nathaly R. Guerrero-Ramírez, Laynara F. Lugli, Lindsay A. Mcculloch, Mareli Sanchez-Julia, Sarah A. Batterman, Caroline Dallstream, Claire Fortunel, Laura Toro, Lucia Fuchslueger, Michelle Y. Wong, Daniela Yaffar, Joshua B. Fisher, Marie Arnaud, Lee H. Dietterich, Shalom D. Addo-Danso, Oscar J. Valverde-Barrantes, Monique Weemstra, Jing Cheng Ng, Richard J. Norby Feb 2024

Toward A Coordinated Understanding Of Hydro-Biogeochemical Root Functions In Tropical Forests For Application In Vegetation Models, Daniela F. Cusack, Bradley Christoffersen, Chris M. Smith-Martin, Kelly M. Andersen, Amanda L. Cordeiro, Katrin Fleischer, S. Joseph Wright, Nathaly R. Guerrero-Ramírez, Laynara F. Lugli, Lindsay A. Mcculloch, Mareli Sanchez-Julia, Sarah A. Batterman, Caroline Dallstream, Claire Fortunel, Laura Toro, Lucia Fuchslueger, Michelle Y. Wong, Daniela Yaffar, Joshua B. Fisher, Marie Arnaud, Lee H. Dietterich, Shalom D. Addo-Danso, Oscar J. Valverde-Barrantes, Monique Weemstra, Jing Cheng Ng, Richard J. Norby

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Tropical forest root characteristics and resource acquisition strategies are underrepresented in vegetation and global models, hampering the prediction of forest–climate feedbacks for these carbon-rich ecosystems. Lowland tropical forests often have globally unique combinations of high taxonomic and functional biodiversity, rainfall seasonality, and strongly weathered infertile soils, giving rise to distinct patterns in root traits and functions compared with higher latitude ecosystems. We provide a roadmap for integrating recent advances in our understanding of tropical forest belowground function into vegetation models, focusing on water and nutrient acquisition. We offer comparisons of recent advances in empirical and model understanding of root characteristics …


Multiple Light Signaling Pathways Control Solar Tracking In Sunflowers, Christopher J. Brooks, Hagop S. Atamian, Stacey L. Harmer Oct 2023

Multiple Light Signaling Pathways Control Solar Tracking In Sunflowers, Christopher J. Brooks, Hagop S. Atamian, Stacey L. Harmer

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Sunflowers are famous for their ability to track the sun throughout the day and then reorient at night to face east the following morning. This occurs by differential growth patterns, with the east sides of stems growing more during the day and the west sides of stems growing more at night. This process, termed heliotropism, is generally believed to be a specialized form of phototropism; however, the underlying mechanism is unknown. To better understand heliotropism, we compared gene expression patterns in plants undergoing phototropism in a controlled environment and in plants initiating and maintaining heliotropic growth in the field. We …


Quantifying And Manipulating The Angles Of Light In Experimental Measurements Of Plant Gas Exchange, Z. Carter Berry, Jerry Larue, Gregory R. Goldsmith Mar 2022

Quantifying And Manipulating The Angles Of Light In Experimental Measurements Of Plant Gas Exchange, Z. Carter Berry, Jerry Larue, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Diffuse light has been shown to alter plant leaf photosynthesis, transpiration and water-use efficiency. Despite this, the angular distribution of light for the artificial light sources used with common gas exchange systems is unknown. Here, we quantify the angular distribution of light from common gas exchange systems and demonstrate the use of an integrating sphere for manipulating those light distributions. Among three different systems, light from a 90° angle perpendicular to the leaf surface (±5.75°) was <25% of the total light reaching the leaf surface. The integrating sphere resulted in a greater range of possible distributions from predominantly direct light (i.e., >40% of light from a 90 ± 5.75° angle perpendicular to the leaf surface) to almost entirely diffuse (i.e., light from an even distribution …


Above- And Below-Ground Functional Trait Coordination In The Neotropical Understory Genus Costus, Eleinis Ávila-Lovera, Gregory R. Goldsmith, Kathleen M. Kay, Jennifer L. Funk Dec 2021

Above- And Below-Ground Functional Trait Coordination In The Neotropical Understory Genus Costus, Eleinis Ávila-Lovera, Gregory R. Goldsmith, Kathleen M. Kay, Jennifer L. Funk

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The study of plant functional traits and variation among and within species can help illuminate functional coordination and trade-offs in key processes that allow plants to grow, reproduce and survive. We studied 20 leaf, above-ground stem, below-ground stem and fine-root traits of 17 Costus species from forests in Costa Rica and Panama to answer the following questions: (i) Do congeneric species show above-ground and below-ground trait coordination and trade-offs consistent with theory of resource acquisition and conservation? (ii) Is there correlated evolution among traits? (iii) Given the diversity of habitats over which Costus occurs, what is the relative contribution of …


A Microbiome Engineering Framework To Evaluate Rhizobial Symbionts Of Legumes, Kenjiro W. Quides, Hagop S. Atamian Mar 2021

A Microbiome Engineering Framework To Evaluate Rhizobial Symbionts Of Legumes, Kenjiro W. Quides, Hagop S. Atamian

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Background

For well over a century, rhizobia have been recognized as effective biofertilizer options for legume crops. This has led to the widespread use of rhizobial inoculants in agricultural systems, but a recurring issue has emerged: applied rhizobia struggle to provide growth benefits to legume crops. This has largely been attributed to the presence of soil rhizobia and has been termed the ‘rhizobial competition problem.’

Scope

Microbiome engineering has emerged as a methodology to circumvent the rhizobial competition problem by creating legume microbiomes that do not require exogenous rhizobia. However, we highlight an alternative implementation of microbiome engineering that focuses …


Patterns Of Intraspecific Trait Variation Along An Aridity Gradient Suggest Both Drought Escape And Drought Tolerance Strategies In An Invasive Herb, Shana R. Welles, Jennifer L. Funk Sep 2020

Patterns Of Intraspecific Trait Variation Along An Aridity Gradient Suggest Both Drought Escape And Drought Tolerance Strategies In An Invasive Herb, Shana R. Welles, Jennifer L. Funk

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Background and Aims

In water limited landscapes, some plants build structures that enable them to survive with minimal water (drought resistance). Instead of making structures that allow for survival through times of water limitation, annual plants may invoke a drought escape strategy where they complete growth and reproduction when water is available. Drought escape and resistance each require a unique combination of traits and, therefore, plants are likely to have a suite of trait values that are consistent with a single drought response strategy. In environments where conditions are variable, plants may additionally evolve phenotypically plastic trait responses to water …


Leaf Traits Can Be Used To Predict Rates Of Litter Decomposition, Marc Rosenfield, Jennifer L. Funk, Jason K. Keller, Catrina Clausen, Kimberlee Cyphers Jun 2020

Leaf Traits Can Be Used To Predict Rates Of Litter Decomposition, Marc Rosenfield, Jennifer L. Funk, Jason K. Keller, Catrina Clausen, Kimberlee Cyphers

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Strong relationships exist between litter chemistry traits and rates of litter decomposition. However, leaf traits are more commonly found in online trait databases than litter traits and fewer studies have examined how well leaf traits predict litter decomposition rates. Furthermore, while bulk leaf nitrogen (N) content is known to regulate litter decomposition, few studies have explored the importance of N biochemistry fractions, such as protein and amino acid concentration. Here, we decomposed green leaves and naturally senesced leaf litter of nine species representing a wide range of leaf functional traits. We evaluated the ability of traits associated with leaf and …


Leaf Traits And Performance Vary With Plant Age And Water Availability In Artemisia Californica, Jennifer L. Funk, Julie E. Larson, Gregory Vose Jun 2020

Leaf Traits And Performance Vary With Plant Age And Water Availability In Artemisia Californica, Jennifer L. Funk, Julie E. Larson, Gregory Vose

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Background and aims
Leaf functional traits are strongly tied to growth strategies and ecological processes across species, but few efforts have linked intraspecific trait variation to performance across ontogenetic and environmental gradients. Plants are believed to shift towards more resource-conservative traits in stressful environments and as they age. However, uncertainty in how intraspecific trait variation aligns with plant age and performance in the context of environmental variation may limit our ability to use traits to infer ecological processes at larger scales.

Methods
We measured leaf physiological and morphological traits, canopy volume, and flowering effort for Artemisia californica (California sagebrush), a …


De Novo Sequencing And Analysis Of Salvia Hispanica Tissue-Specific Transcriptome And Identification Of Genes Involved In Terpenoid Biosynthesis, James Wimberley, Joseph Cahill, Hagop S. Atamian Mar 2020

De Novo Sequencing And Analysis Of Salvia Hispanica Tissue-Specific Transcriptome And Identification Of Genes Involved In Terpenoid Biosynthesis, James Wimberley, Joseph Cahill, Hagop S. Atamian

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Salvia hispanica (commonly known as chia) is gaining popularity worldwide as a healthy food supplement due to its low saturated fatty acid and high polyunsaturated fatty acid content, in addition to being rich in protein, fiber, and antioxidants. Chia leaves contain plethora of secondary metabolites with medicinal properties. In this study, we sequenced chia leaf and root transcriptomes using the Illumina platform. The short reads were assembled into contigs using the Trinity software and annotated against the Uniprot database. The reads were de novo assembled into 103,367 contigs, which represented 92.8% transcriptome completeness and a diverse set of Gene Ontology …


Ecological Strategies Begin At Germination: Traits, Plasticity, And Survival In The First Four Days Of Plant Life, Julie E. Larson, Brian L. Anacker, Sara Wanous, Jennifer L. Funk Feb 2020

Ecological Strategies Begin At Germination: Traits, Plasticity, And Survival In The First Four Days Of Plant Life, Julie E. Larson, Brian L. Anacker, Sara Wanous, Jennifer L. Funk

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

  1. We commonly use trait variation to characterize plant function within and among species and understand how vegetation responds to the environment. Seedling emergence is an especially vulnerable window affecting population and community dynamics, yet trait‐based frameworks often bypass this earliest stage of plant life. Here we assess whether traits vary in ecologically‐meaningful ways when seedlings are just days old. How do shared evolutionary history and environmental conditions shape trait expression, and can traits explain which seedlings endure drought?.
  2. We measured seedling traits in the first four days of life for 16 annual plant species under two water treatments, exploring trait …


The 18O-Signal Transfer From Water Vapour To Leaf Water And Assimilates Varies Among Plant Species And Growth Forms, Marco M. Lehmann, Gregory R. Goldsmith, Cathleen Mirande-Ney, Rosemarie B. Weigt, Leonie Schönbeck, Ansgar Kahmen, Arthur Gessler, Rolf T.W. Siegwolf, Matthias Saurer Nov 2019

The 18O-Signal Transfer From Water Vapour To Leaf Water And Assimilates Varies Among Plant Species And Growth Forms, Marco M. Lehmann, Gregory R. Goldsmith, Cathleen Mirande-Ney, Rosemarie B. Weigt, Leonie Schönbeck, Ansgar Kahmen, Arthur Gessler, Rolf T.W. Siegwolf, Matthias Saurer

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The 18O signature of atmospheric water vapour (δ18OV) is known to be transferred via leaf water to assimilates. It remains, however, unclear how the 18O‐signal transfer differs among plant species and growth forms. We performed a 9‐hr greenhouse fog experiment (relative humidity ≥ 98%) with 18O‐depleted water vapour (−106.7‰) on 140 plant species of eight different growth forms during daytime. We quantified the 18O‐signal transfer by calculating the mean residence time of O in leaf water (MRTLW) and sugars (MRTSugars) and related it to leaf traits and physiological …


Diffuse Light And Wetting Differentially Affect Tropical Tree Leaf Photosynthesis, Z. Carter Berry, Gregory R. Goldsmith Aug 2019

Diffuse Light And Wetting Differentially Affect Tropical Tree Leaf Photosynthesis, Z. Carter Berry, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

‐Most ecosystems experience frequent cloud cover resulting in light that is predominantly diffuse rather than direct. Moreover, these cloudy conditions are often accompanied by rain that results in wet leaf surfaces. Despite this, our understanding of photosynthesis is built upon measurements made on dry leaves experiencing direct light.

‐Using a modified gas exchange setup, we measured the effects of diffuse light and leaf wetting on photosynthesis in canopy species from a tropical montane cloud forest.

‐We demonstrate significant variation in species‐level response to light quality independent of light intensity. Some species demonstrated 100% higher rates of photosynthesis in diffuse light …


Seasonal Origins Of Soil Water Used By Trees, Scott T. Allen, James W. Kirchner, Sabine Braun, Rolf T. W. Siegwolf, Gregory R. Goldsmith Mar 2019

Seasonal Origins Of Soil Water Used By Trees, Scott T. Allen, James W. Kirchner, Sabine Braun, Rolf T. W. Siegwolf, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Rain recharges soil water storages and either percolates downward into aquifers and streams or is returned to the atmosphere through evapotranspiration. Although it is commonly assumed that summer rainfall recharges plant-available water during the growing season, the seasonal origins of water used by plants have not been systematically explored. We characterize the seasonal origins of waters in soils and trees by comparing their midsummer isotopic signatures (δ2H) to seasonal isotopic cycles in precipitation, using a new seasonal origin index. Across 182 Swiss forest sites, xylem water isotopic signatures show that summer rain was not the predominant water source …


Phylogenetic And Biogeographic Controls Of Plant Nighttime Stomatal Conductance, Kailiang Yu, Gregory R. Goldsmith, Yujie Wang, William R. L. Anderegg Feb 2019

Phylogenetic And Biogeographic Controls Of Plant Nighttime Stomatal Conductance, Kailiang Yu, Gregory R. Goldsmith, Yujie Wang, William R. L. Anderegg

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The widely documented phenomenon of nighttime stomatal conductance (gsn) could lead to substantial water loss with no carbon gain, and thus it remains unclear whether nighttime stomatal conductance confers a functional advantage. Given that studies of gsn have focused on controlled environments or small numbers of species in natural environments, a broad phylogenetic and biogeographic context could provide insights into potential adaptive benefits of gsn.

We measured gsn on a diverse suite of species (n = 73) across various functional groups and climates‐of‐origin in a common garden to study the phylogenetic and biogeographic/climatic controls …


Foliar Water Uptake: Processes, Pathways, And Integration Into Plant Water Budgets, Z. Carter Berry, Nathan C. Emery, Sybil G. Gotsch, Gregory R. Goldsmith Sep 2018

Foliar Water Uptake: Processes, Pathways, And Integration Into Plant Water Budgets, Z. Carter Berry, Nathan C. Emery, Sybil G. Gotsch, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Nearly all plant families, represented across most major biomes, absorb water directly through their leaves. This phenomenon is commonly referred to as foliar water uptake. Recent studies have suggested that foliar water uptake provides a significant water subsidy that can influence both plant water and carbon balance across multiple spatial and temporal scales. Despite this, our mechanistic understanding of when, where, how, and to what end water is absorbed through leaf surfaces remains limited. We first review the evidence for the biophysical conditions necessary for foliar water uptake to occur, focusing on the plant and atmospheric water potentials necessary to …


Inferring Foliar Water Uptake Using Stable Isotopes Of Water, Gregory R. Goldsmith, Marco M. Lehmann, Lucas A. Cernusak, Matthias Arend, Rolf T.W. Siegwolf Jul 2017

Inferring Foliar Water Uptake Using Stable Isotopes Of Water, Gregory R. Goldsmith, Marco M. Lehmann, Lucas A. Cernusak, Matthias Arend, Rolf T.W. Siegwolf

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

A growing number of studies have described the direct absorption of water into leaves, a phenomenon known as foliar water uptake. The resultant increase in the amount of water in the leaf can be important for plant function. Exposing leaves to isotopically enriched or depleted water sources has become a common method for establishing whether or not a plant is capable of carrying out foliar water uptake. However, a careful inspection of our understanding of the fluxes of water isotopes between leaves and the atmosphere under high humidity conditions shows that there can clearly be isotopic exchange between the two …


Hydrogenation Of Organic Matter As A Terminal Electron Sink Sustains High Co2:Ch4 Production Ratios During Anaerobic Decomposition, Rachel M. Wilson, Malak M. Tfaily, Virginia I. Rich, Jason K. Keller, Scott D. Bridgham, Cassandra Medvedeff Zalman, Laura Meredith, Paul J. Hanson, Mark Hines, Laurel Pfeifer-Meister, Scott R. Saleska, Patrick Crill, William T. Cooper, Jeff P. Chanton, Joel E. Kostka Jul 2017

Hydrogenation Of Organic Matter As A Terminal Electron Sink Sustains High Co2:Ch4 Production Ratios During Anaerobic Decomposition, Rachel M. Wilson, Malak M. Tfaily, Virginia I. Rich, Jason K. Keller, Scott D. Bridgham, Cassandra Medvedeff Zalman, Laura Meredith, Paul J. Hanson, Mark Hines, Laurel Pfeifer-Meister, Scott R. Saleska, Patrick Crill, William T. Cooper, Jeff P. Chanton, Joel E. Kostka

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Once inorganic electron acceptors are depleted, organic matter in anoxic environments decomposes by hydrolysis, fermentation, and methanogenesis, requiring syntrophic interactions between microorganisms to achieve energetic favorability. In this classic anaerobic food chain, methanogenesis represents the terminal electron accepting (TEA) process, ultimately producing equimolar CO2 and CH4 for each molecule of organic matter degraded. However, CO2:CH4 production in Sphagnum-derived, mineral-poor, cellulosic peat often substantially exceeds this 1:1 ratio, even in the absence of measureable inorganic TEAs. Since the oxidation state of C in both cellulose-derived organic matter and acetate is 0, and CO2 has …


Predicting Trait-Environment Relationships For Venation Networks Elong An Andes-Amazon Elevation Gradient, Benjamin Blonder, Norma Salinas, Lisa Patrick Bentley, Alexander Shenkin, Percy O. Chambi Porroa, Yolvi Valdez Tejeira, Cyrille Violle, Nikolaos M. Fyllas, Gregory R. Goldsmith, Roberta E. Martin, Gregory P. Asner, Sandra Diaz, Brian J. Enquist, Yadvinder Malhi Apr 2017

Predicting Trait-Environment Relationships For Venation Networks Elong An Andes-Amazon Elevation Gradient, Benjamin Blonder, Norma Salinas, Lisa Patrick Bentley, Alexander Shenkin, Percy O. Chambi Porroa, Yolvi Valdez Tejeira, Cyrille Violle, Nikolaos M. Fyllas, Gregory R. Goldsmith, Roberta E. Martin, Gregory P. Asner, Sandra Diaz, Brian J. Enquist, Yadvinder Malhi

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Understanding functional trait-environment relationships (TERs) may improve predictions of community assembly. However, many empirical TERs have been weak or lacking conceptual foundation. TERs based on leaf venation networks may better link individuals and communities via hydraulic constraints. We report measurements of vein density, vein radius, and leaf thickness for more than 100 dominant species occurring in ten forest communities spanning a 3,300 m Andes-Amazon elevation gradient in Peru. We use these data to measure the strength of TERs at community scale and to determine whether observed TERs are similar to those predicted by physiological theory. We found strong support for …


Can Functional Traits Predict Plant Community Response To Global Change?, Sarah Kimball, Jennifer L. Funk, Marko J. Spasojevic, Katharine N. Suding, Scot Parker, Michael K. Goulden Dec 2016

Can Functional Traits Predict Plant Community Response To Global Change?, Sarah Kimball, Jennifer L. Funk, Marko J. Spasojevic, Katharine N. Suding, Scot Parker, Michael K. Goulden

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

One primary goal at the intersection of community ecology and global change biology is to identify functional traits that are useful for predicting plant community response to global change. We used observations of community composition from a long-term field experiment in two adjacent plant communities (grassland and coastal sage shrub) to investigate how nine key plant functional traits were related to altered water and nitrogen availability following fire. We asked whether the functional responses of species found in more than one community type were context dependent and whether community-weighted mean and functional diversity were significantly altered by water and nitrogen …


The Variation Of Productivity And Its Allocation Along A Tropical Elevation Gradient: A Whole Carbon Budget Perspective, Yadvinder Malhi, Cécile A. J. Girardin, Gregory R. Goldsmith, Christopher E. Doughty, Norma Salinas, Daniel B. Metcalfe, Walter Huaraca Huasco, Javier E. Silva-Espejo, Jhon Del Aguilla-Pasquell, Filio Farfán Amézquita, Luiz E.O.C. Aragão, Rossella Guerrieri, Françoise Yoko Ishida, Nur Bahar, William Farfan-Rios, Oliver L. Phillips, Patrick Meir, Miles Silman Oct 2016

The Variation Of Productivity And Its Allocation Along A Tropical Elevation Gradient: A Whole Carbon Budget Perspective, Yadvinder Malhi, Cécile A. J. Girardin, Gregory R. Goldsmith, Christopher E. Doughty, Norma Salinas, Daniel B. Metcalfe, Walter Huaraca Huasco, Javier E. Silva-Espejo, Jhon Del Aguilla-Pasquell, Filio Farfán Amézquita, Luiz E.O.C. Aragão, Rossella Guerrieri, Françoise Yoko Ishida, Nur Bahar, William Farfan-Rios, Oliver L. Phillips, Patrick Meir, Miles Silman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

  • Why do forest productivity and biomass decline with elevation? To address this question, research to date generally has focused on correlative approaches describing changes in woody growth and biomass with elevation.

  • We present a novel, mechanistic approach to this question by quantifying the autotrophic carbon budget in 16 forest plots along a 3300 m elevation transect in Peru.

  • Low growth rates at high elevations appear primarily driven by low gross primary productivity (GPP), with little shift in either carbon use efficiency (CUE) or allocation of net primary productivity (NPP) between wood, fine roots and canopy. The lack of trend in …


Variation In Leaf Wettability Traits Along A Tropical Montane Elevation Gradient, Gregory R. Goldsmith, Lisa Patrick Bentley, Alexander Shenkin, Norma Salinas, Benjamin Blonder, Roberta E. Martin, Rosa Castro-Ccossco, Percy Chambi-Porroa, Sandra Diaz, Brian J. Enquist, Gregory P. Asner, Yadvinder Malhi Jul 2016

Variation In Leaf Wettability Traits Along A Tropical Montane Elevation Gradient, Gregory R. Goldsmith, Lisa Patrick Bentley, Alexander Shenkin, Norma Salinas, Benjamin Blonder, Roberta E. Martin, Rosa Castro-Ccossco, Percy Chambi-Porroa, Sandra Diaz, Brian J. Enquist, Gregory P. Asner, Yadvinder Malhi

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

  • Leaf wetting is often considered to have negative effects on plant function, such that wet environments may select for leaves with certain leaf surface, morphological, and architectural traits that reduce leaf wettability. However, there is growing recognition that leaf wetting can have positive effects.
  • We measured variation in two traits, leaf drip tips and leaf water repellency, in a series of nine tropical forest communities occurring along a 3300-m elevation gradient in southern Peru. To extend this climatic gradient, we also assembled published leaf water repellency values from 17 additional sites. We then tested hypotheses for how these traits should …


Regeneration: An Overlooked Aspect Of Trait-Based Plant Community Assembly Models, Julie Larson, Jennifer L. Funk May 2016

Regeneration: An Overlooked Aspect Of Trait-Based Plant Community Assembly Models, Julie Larson, Jennifer L. Funk

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Despite the disproportionate influence that propagule production, dispersal, seed to seedling recruitment, and vegetative reproduction can have on plant population and community dynamics, progress has been slow in the directed collection of regeneration traits to inform community assembly outcomes.

While seed mass is globally available and linked to growth and reproductive output, there are limits to its explanatory ability. In this essay, we call for expanded efforts to integrate a more diverse set of regeneration traits into community assembly models.

First, we extend an existing community assembly framework to conceptualize regeneration as a series of transitional processes whose outcomes are …


The Linkages Between Photosynthesis, Productivity, Growth And Biomass In Lowland Amazonian Forests, Yadvinder Malhi, Christopher E. Doughty, Gregory R. Goldsmith, Daniel B. Metcalfe, Cécile A.J. Girardin, Toby R. Marthews, Jhon Del Aguila-Pasquel, Luiz E.O.C. Aragão, Alejandro Araujo-Murakami, Paulo Brando, Antonino C.L. Da Costa, Javier E. Silva-Espejo, Filio Farfán Amézquita, David R. Galbraith, Carlos A. Quesada, Wanderley Rocha, Norma Salinas-Revilla, Divino Silvério, Patrick Meir, Oliver L. Phillips Mar 2015

The Linkages Between Photosynthesis, Productivity, Growth And Biomass In Lowland Amazonian Forests, Yadvinder Malhi, Christopher E. Doughty, Gregory R. Goldsmith, Daniel B. Metcalfe, Cécile A.J. Girardin, Toby R. Marthews, Jhon Del Aguila-Pasquel, Luiz E.O.C. Aragão, Alejandro Araujo-Murakami, Paulo Brando, Antonino C.L. Da Costa, Javier E. Silva-Espejo, Filio Farfán Amézquita, David R. Galbraith, Carlos A. Quesada, Wanderley Rocha, Norma Salinas-Revilla, Divino Silvério, Patrick Meir, Oliver L. Phillips

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Understanding the relationship between photosynthesis, net primary productivity and growth in forest ecosystems is key to understanding how these ecosystems will respond to global anthropogenic change, yet the linkages among these components are rarely explored in detail. We provide the first comprehensive description of the productivity, respiration and carbon allocation of contrasting lowland Amazonian forests spanning gradients in seasonal water deficit and soil fertility. Using the largest data set assembled to date, ten sites in three countries all studied with a standardized methodology, we find that (i) gross primary productivity (GPP) has a simple relationship with seasonal water deficit, but …


Plant Functional Traits Of Dominant Native And Invasive Species In Mediterranean-Climate Ecosystems, Jennifer L. Funk, Rachel J. Standish, William D. Stock, Fernando Valladares Jan 2015

Plant Functional Traits Of Dominant Native And Invasive Species In Mediterranean-Climate Ecosystems, Jennifer L. Funk, Rachel J. Standish, William D. Stock, Fernando Valladares

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The idea that dominant invasive plant species outperform neighboring native species through higher rates of carbon assimilation and growth is supported by several analyses of global datasets. However, theory suggests that native and invasive species occurring in low-resource environments will be functionally similar, as environmental factors restrict the range of observed physiological and morphological trait values. We measured resource-use traits in native and invasive plant species across eight diverse vegetation communities distributed throughout the five Mediterranean-climate regions, which are drought-prone and increasingly threatened by human activities including the introduction of exotic species. Traits differed strongly across the five regions. In …


Differential Allocation To Photosynthetic And Non-Photosynthetic Nitrogen Fractions Among Native And Invasive Species, Jennifer L. Funk, Lori A. Glenwinkle, Lawren Sack Jan 2013

Differential Allocation To Photosynthetic And Non-Photosynthetic Nitrogen Fractions Among Native And Invasive Species, Jennifer L. Funk, Lori A. Glenwinkle, Lawren Sack

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Invasive species are expected to cluster on the “high-return” end of the leaf economic spectrum, displaying leaf traits consistent with higher carbon assimilation relative to native species. Intra-leaf nitrogen (N) allocation should support these physiological differences; however, N biochemistry has not been examined in more than a few invasive species. We measured 34 leaf traits including seven leaf N pools for five native and five invasive species from Hawaii under low irradiance to mimic the forest understory environment. We found several trait differences between native and invasive species. In particular, invasive species showed preferential N allocation to metabolism (amino acids) …


Leaf Traits Within Communities: Context May Affect The Mapping Of Traits To Function, Jennifer L. Funk, William K. Cornwell Jan 2013

Leaf Traits Within Communities: Context May Affect The Mapping Of Traits To Function, Jennifer L. Funk, William K. Cornwell

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The leaf economics spectrum (LES) has revolutionized the way many ecologists think about quantifying plant ecological trade-offs. In particular, the LES has connected a clear functional trade-off (long-lived leaves with slow carbon capture vs. short-lived leaves with fast carbon capture) to a handful of easily measured leaf traits. Building on this work, community ecologists are now able to quickly assess species carbon-capture strategies, which may have implications for community-level patterns such as competition or succession. However, there are a number of steps in this logic that require careful examination, and a potential danger arises when interpreting leaf-trait variation among species …