Other Plant Sciences Commons^™

Re-Indigenizing And Collaboratively Tending Urban Greenspaces, Divinity Nnenne Adewale

University Honors Theses

This work details the active process of land tending with the intention of re-Indigenization in the Pacific Northwest at several Portland sites; The Native American Student Community Center, PSU Oak Savanna, and the Ridgefield National Wildlife Refuge. Land tending is an intuitive process, one rooted in love and respect for life of all forms as well as becoming the perpetual student; land tending is not a skill to be mastered, only practiced. Unlike environmental management, tending cannot be done separate from the earth, in a classroom or otherwise. Connections are what tending is built on top of: the foundation; effort …

Mountain Big Sagebrush Restoration In Former Dryland Pasture, Elizabeth Bailey, Eric Thacker, Thomas Monaco, Kari E. Veblen

All Current Publications

Our study supports using older naturally grown sagebrush plants (wildlings) for restoration efforts. Wildlings had already faced various environmental stresses before transplantation and then had a survival advantage when transplanted. Our study also demonstrates how successfully established transplants planted in “islands” aid in the future recruitment of sagebrush. Overall, because of their higher survival, we found that wildlings led to higher sagebrush densities and were a more cost-effective approach.

Phytoplankton Responses To Changing Irradiance And Carbon Fertilization, Alison Siersma

Graduate Theses and Dissertations (2019 - present)

Phytoplankton play a crucial role in marine ecosystems due to their innate ability to fix carbon. As atmospheric CO2 levels continue to rise from fossil fuel combustion, the resulting increase in dissolved CO2 and the concurrent decrease in ocean pH are likely to impact the phytoplankton community. The response of phytoplankton to elevated CO2 can vary significantly among species and environmental conditions (e.g. light, temperature, nutrient availability). To address these variations, an experiment was conducted using a controlled photobioreactor system, maintaining high and low light, constant temperature, nutrient levels, and two pCO2 concentrations. This study focused on two regionally relevant …

Broad-Spectrum Resistance To Fungal Foliar Diseases In Wheat: Recent Efforts And Achievements, Amira M.I. Mourad, Asmaa A.M. Ahmed, P. Stephen Baenziger, Andreas Börner, Ahmed Sallam

Department of Agronomy and Horticulture: Faculty Publications

Wheat (Triticum spp.) is one of the most important cereal crops in the world. Several diseases affect wheat production and can cause 20-80% yield loss annually. Out of these diseases, stripe rust, also known as yellow rust (Puccinia striiformis f. sp. tritici), stem rust (Puccinia graminis f. sp. tritici), leaf rust (Puccinia recondita), and powdery mildew (Blumeria graminis f. sp. tritici) are the most important fungal diseases that infect the foliar part of the plant. Many efforts were made to improve wheat resistance to these diseases. Due to the continuous advancement in …

Disentangling Genotype And Environment Specific Latent Features For Improved Trait Prediction Using A Compositional Autoencoder, Anirudha Powadi, Talukder Zaki Jubery, Michael C. Tross, James C. Schnable, Baskar Ganapathysubramanian

Department of Agronomy and Horticulture: Faculty Publications

In plant breeding and genetics, predictive models traditionally rely on compact representations of high-dimensional data, often using methods like Principal Component Analysis (PCA) and, more recently, Autoencoders (AE). However, these methods do not separate genotype-specific and environment-specific features, limiting their ability to accurately predict traits influenced by both genetic and environmental factors. We hypothesize that disentangling these representations into genotype-specific and environment-specific components can enhance predictive models. To test this, we developed a compositional autoencoder (CAE) that decomposes high-dimensional data into distinct genotype-specific and environment-specific latent features. Our CAE framework employed a hierarchical architecture within an autoencoder to effectively separate …

Industrial Hemp Biomass Negatively Affected By Herbicide Drift From Corn And Soybean Herbicides, Milos Zaric, Bruno Canella Vieira, Barbara Houston, Guilherme Sousa Alves, Samuel E. Wortman, Julie A. Peterson, Greg R. Kruger

Department of Agronomy and Horticulture: Faculty Publications

The establishment of industrial hemp (Cannabis sativa L.) fields near row crops has raised concerns about the potential adverse effects of herbicide drift on hemp production. This study examined hemp susceptibility to drift of herbicides registered for use in corn and/or soybeans. Herbicide solutions (2,4-D, dicamba, glufosinate, glyphosate, imazethapyr, lactofen, mesotrione) were applied separately in the wind tunnel (3.6 m s⁻¹ airspeed), simulating drift scenarios, with conventional TP95015EVS (TP) and air inclusion AI95015EVS (AI) flat fan nozzles calibrated to deliver 140 L ha⁻¹ carrier volume at 230 kPa. Mylar cards and hemp plants (20–25 cm tall) were placed …

Examining Wildfire Dynamics Using Ecostress Data With Machine Learning Approaches: The Case Of South-Eastern Australia's Black Summer, Yuanhui Zhu, Shakthi B. Murugesan, Ivone K. Masara, Soe W. Myint, Joshua B. Fisher

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Wildfires are increasing in risk and prevalence. The most destructive wildfires in decades in Australia occurred in 2019–2020. However, there is still a challenge in developing effective models to understand the likelihood of wildfire spread (susceptibility) and pre-fire vegetation conditions. The recent launch of NASA's ECOSTRESS presents an opportunity to monitor fire dynamics with a high resolution of 70 m by measuring ecosystem stress and drought conditions preceding wildfires. We incorporated ECOSTRESS data, vegetation indices, rainfall, and topographic data as independent variables and fire events as dependent variables into machine learning algorithms applied to the historic Australian wildfires of 2019–2020. …

Nebline, November/December 2024

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Positive Insights Shared Regarding CHIME: Head Start University Partnership Project, Jaci Fogel

Diabetes Awareness: Small Changes, Big Impact, Kayla Colgrove

Recipe of the Month: Turkey Cranberry Meatballs, Kayla Colgrove

Commercial/ Noncommercial Pesticide License

Love Gardening? Become a Master Gardener!

Garden Guide: Things to Do This Month

Upcoming Green Industry Conferences

Managing the Demands of Water & Wastewater Systems Can Make Gatherings More Enjoyable, Becky Schauerman

It’s Time to Plant Fall Cover Crops, John Nelson

A Quick Guide to Fleas, Kait Chapman

Heart of 4-H Award: Shane Cuttlers and Dena Noe

4-H Specialty Clubs Invite New Members

Nebraska 4-H Fed Steer …

Twas Facilitates Gene-Scale Trait Genetic Dissection Through Gene Expression, Structural Variations, And Alternative Splicing In Soybean, Delin Li, Qi Wang, Yu Tian, Xiangguang Lyv, Hao Zhang, Huilong Hong, Huawei Gao, Yan-Fei Li, Chaosen Zhao, Jiajun Wang, Ruizhen Wang, Jinliang Yang, Bin Liu, Patrick S. Schnable, James C. Schnable, Ying-Hui Li, Li-Juan Qiu

Department of Agronomy and Horticulture: Faculty Publications

A genome-wide association study (GWAS) identifies trait-associated loci, but identifying the causal genes can be a bottleneck, due in part to slow decay of linkage disequilibrium (LD). A transcriptome-wide association study (TWAS) addresses this issue by identifying gene expression–phenotype associations or integrating gene expression quantitative trait loci with GWAS results. Here, we used self-pollinated soybean (Glycine max [L.] Merr.) as a model to evaluate the application of TWAS to the genetic dissection of traits in plant species with slow LD decay. We generated RNA sequencing data for a soybean diversity panel and identified the genetic expression regulation of 29 …

Scaling Individual Tree Transpiration With Thermal Cameras Reveals Interspecies Differences To Drought Vulnerability, Mostafa Javadian, Donald M. Aubrecht, Joshua B. Fisher, Russell L. Scott, Sean P. Burns, Jen L. Diehl, J. William Munger, Andrew D. Richardson

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Understanding tree transpiration variability is vital for assessing ecosystem water-use efficiency and forest health amid climate change, yet most landscape-level measurements do not differentiate individual trees. Using canopy temperature data from thermal cameras, we estimated the transpiration rates of individual trees at Harvard Forest and Niwot Ridge. PT-JPL model was used to derive latent heat flux from thermal images at the canopy-level, showing strong agreement with tower measurements (R2 = 0.70–0.96 at Niwot, 0.59–0.78 at Harvard at half-hourly to monthly scales) and daily RMSE of 33.5 W/m2 (Niwot) and 52.8 W/m2 (Harvard). Tree-level analysis revealed species-specific responses to …

Ai And Future-Making: Design, Biases, And Human-Plant Interactions, Maliheh Ghajargar

Art Faculty Articles and Research

Design researchers and practitioners are turning to generative AI (genAI) to support activities such as ideation and concept development in pursuit of preferred futures. At the same time, genAI is known to have biases, which prompts questions about how these biases might adversely affect design practices. In the domain of sustainable HCI, with its recent trends in human-nature interactions and more-than-human design, the question can be further refined into whether and how genAI biases might perpetuate anthropocentric biases that these practices are increasingly seeking to confront. In the present research, we conducted three workshops, focusing on genAI for human-plant interactions; …

"The Words We Do Not Yet Have." A Creative Inquiry Into Human-Plant Relationships, Maliheh Ghajargar

Art Faculty Articles and Research

Climate change, loss of plant biodiversity, and ocean pollution signal the drastic changes in our ecology that call us to attend to the needs of more than human forms of life on Earth. Sustainable design and HCI research are responding to this call by offering methods and approaches to design more sustainable products and systems and recently, more than human design is building momentum. This agenda seeks to reform traditional design processes by decentering the creative agency of the dominant socio-economical group of humans and foregrounding those of diverse Others. In this paper, I focus on plants as a nonhuman …

Latticed Stinkhorn, Emilee G. Seigworth

PANDION: The Osprey Journal of Research and Ideas

Artist Statement

Latticed Stinkhorn is a watercolor piece originally created for the special gallery of the 2023 Scientific Illustration course at the University of North Florida. It was inspired by my enduring fascination with the world of fungi, particularly specimens of the family Phallaceae. This watercolor piece offers a simple perspective of Clathrus ruber, a species commonly referred to as Latticed Stinkhorn. Like many members of the family, the reproductive fruiting body first surfaces encased in a cream-colored soft shell with a texture comparable to a leathery reptile egg. As the body ages, the initial shell disintegrates to reveal a …

Nebline, October 2024

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Super Fair Showcases 4-H’ers Learning Experiences

10 Money-$aving Grocery $hopping Hacks You Need to Try, Alyssa Havlovic

Recipe of the Month: Air Fryer Pork and Apple Burgers, Alyssa Havlovic

Growing Woody Floral Plants in the Home Garden, Sarah Browning

Garden Guie: Things to Do This Month, Mary Jane Frogge

Highboy Cover Crop Interseeding Project, John Nelson

Car Seat Safety for Your Family, Hayley Jackson-Perez

Heart of 4-H Volunteer Award: Lorene Bartos

Join 4-H

4-H Livestock Scholarship Recipients

State 4-H Horse Expo Top Results

Lancaster County Volunteers Receive Statewide 4-H Awards

4-H Announcements

Super Fair 4-H/FFA Top Results

State Fair 4-H …

Satellite Observations Indicate That Chia Uses Less Water Than Other Crops In Warm Climates, Brian Kirsch, Joshua B. Fisher, Thomas Piechota, Mohammad Hassani, Diego C. Suardiaz, Radhika Puri, Joseph Cahill, Hagop S. Atamian

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Many parts of the world face severe and prolonged drought conditions, stressing the sustainability of water resources and agriculture. Transitioning to water-efficient crops is one strategy that can help adapt to water scarcity. An emerging drought-tolerant crop of interest is chia (Salvia hispanica). Yet, no study has compared its large-scale water use dynamics to those of widely established crops across the globe. Here, we use satellite data over multiple years to assess the water use efficiency of chia, alfalfa, corn, and soybean globally. Results show that chia consumed 13-38% less water than alfalfa, corn, and soy and assimilated …

Dissecting The Genetic Architecture Of Sunflower Disc Diameter Using Genome-Wide Association Study, Yavuz Delen, Ravi V. Mural, Semra Palali-Delen, Gen Xu, James C. Schnable, Ismail M. Dweikat, Jinliang Yang

Department of Agronomy and Horticulture: Faculty Publications

Sunflower (Helianthus annuus L.) plays an essential role in meeting the demand for edible oil worldwide. The yield of sunflower seeds encompasses several component traits, including the disc diameter. Over three consecutive years, 2019, 2020, and 2022, we assessed phenotypic variation in disc diameter across a diverse set of sunflower accessions (N = 342) in replicated field trials. Upon aggregating the phenotypic data from multiple years, we estimated the broad sense heritability (H²) of the disc diameter trait to be 0.88. A subset of N = 274 accessions was genotyped by using the tunable genotyping-by-sequencing (tGBS) method, …

Plant-Microorganism Interactions Within The Rhizosphere For Heavy Metal Soil Remediation, Dorina Podar, Cristina Lorena Văcar, Emanuela Dana Tiodar, Mihaela Gălean, Mihai Cosmin Grimm, Zoltan Robert Balazs, Anastasia Maria Abrudan, Csaba Tiodar

FRONTIERS UNBOUND: Exploring Extreme Environments

No abstract provided.

Metallophytes As Guardians Of Highly Harsh Environments – Comprehensive Insights Into Silene Vulgaris Tolerance To Metals, Konrad Bąk, Maksymilian Adamczyk, Jagoda Matyjek, Anna Rusaczonek, Wojciech Borucki, Alina Wiszniewska, Ewa Muszyńska

FRONTIERS UNBOUND: Exploring Extreme Environments

No abstract provided.

Harnessing The Potential Of Extremophyte Sea Aster For Environmental Challenges, Maksymilian Adamczyk, Konrad Bąk, Anna Rusaczonek, Aleksandra Koźmińska, Ewa Muszyńska, Alina Wiszniewska

FRONTIERS UNBOUND: Exploring Extreme Environments

No abstract provided.

Association Mapping Of Important Agronomic Traits In Mucuna Pruriens (L.) Dc., Patrush Lepcha, Mahesh Shekhar, Leelambika Murugesan, Mahammad Jaheer, Ratan Chopra, Vikas Belamkar, Narayana Sathyanarayana

Department of Agronomy and Horticulture: Faculty Publications

Background The tropical legume Mucuna pruriens (L.) DC. can meet three agricultural needs: low-cost protein, highvalue medicines, and green manure or cover crops. But like other underutilized crops, it needs more modern breeding resources. Identifying marker-trait associations (MTAs) can facilitate marker-assisted breeding and crop improvement. Recent studies have demonstrated the feasibility of identifying MTAs using a small number of accessions (< 100). We have characterized a panel of 70 M. pruriens accessions across two consecutive years and performed association analysis for 16 phenotypic traits related to seed (seed length, seed width, seed thickness, seed yield per plant, hundred seed weight); pod (pod length, pod width, number of pods …

Chinese Tallow Long-Term Impact On Stand Dynamics In A Bottomland Hardwood Forest Following Vegetation Management, Nicklaus R. Langlois

Electronic Theses and Dissertations

Chinese tallow (Triadica sebifera (L.) Small) is an invasive tree known to have negative impacts on bottomland hardwood forests. Chinese tallow is proficient in reproducing and surviving in bottomland hardwood forests because it is more flood and shade tolerant than most native trees. The long-term effectiveness of Chinese tallow control is an important topic to research as only a few long-term studies of Chinese tallow control have been conducted. A 10-year re-measurement of 22 paired plots installed in 2012 on the Pineywoods Mitigation Bank near Diboll, Texas following herbicide treatments examined Chinese tallow and native tree stand structure. Each …

Gps Accuracy Of Smartphones For Crowdsourcing Research, Derron L. Dike

Master of Science in Environmental Sciences and Management Projects

ABSTRACT GPS Accuracy of Smartphones for Crowdsourcing Research Derron Dike Utilizing crowdsourcing with smartphones as a method for field data collection can contribute an array of data for scientific studies and land management applications. This study used crowdsourcing to examine smartphone built-in GPS performance for providing location-specific information with potential forestry applications. The usability of smartphones for GPS data collection in forestry studies or other practical applications is dependent on the level of accuracy required for those applications. A Smartphone Accuracy Trial was designed to test the GPS accuracy performance of current smartphones. Participants used the ArcGIS Field Maps application …

Nebline, August/September 2024

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Preserving the Harvest: Canning, Freezing and Drying Tips, Kayla Colgrove

How Savvy are YOU with Home Canning?

Recipe of the Month: Freezing Onions, Kayla Colgrove

Deep, Infrequent Irrigation Makes Lawns and Trees Healthier, Sarah Browning

Garden Guide: Things to Do This Month, Mary Jane Frogge

Get the Jump on Jumping Worms, Kait Jumpman

Preparing Water for Use in an Emergency, Becky Schuerman

Heart of 4-H Volunteer Award: Nicole Miller and Cole Meador

4-H Teen Council Invites New Members

4-H Announcements

Lancaster County Super Fair, August 1-10, 2024

4-H Premiere Communication Event Top Results

4-H Clover College: 55 Hands-on Workshops

4-H …

Evaluation And Improvement Of The Design 4 Every Drop Course, Kenzy Fogle

All Graduate Reports and Creative Projects, Fall 2023 to Present

Utah and the greater Intermountain West are experiencing a water crisis. Many factors are contributing to this situation, including an arid climate exacerbated by climate change, rapid population growth, and a high-water-demanding landscape typology. Landscapes currently consume an estimated 60-80% of Utah’s potable water, representing a significant opportunity for water savings. However, changing the traditional water-dependent landscape typology requires educating the public regarding water-wise landscape design processes, best practices, and implementation approaches. Utah State University is the land grant university for Utah and home to one of the oldest Landscape Architecture departments in the Intermountain West. Utah State University’s community …

Greater Aperture Counteracts Effects Of Reduced Stomatal Density On Water Use Efficiency: A Case Study On Sugarcane And Meta-Analysis, Daniel Lunn, Baskaran Kannan, Amandine Germon, Alistair Leverett, Thomas E. Clemente, Fredy Altpeter, Andrew D.B. Leakey

Department of Agronomy and Horticulture: Faculty Publications

Stomata regulate CO₂ and water vapor exchange between leaves and the atmosphere. Stomata are a target for engineering to improve crop intrinsic water use efficiency (iWUE). One example is by expressing genes that lower stomatal density (SD) and reduce stomatal conductance (g_sw). However, the quantitative relationship between reduced SD, g_sw, and the mechanisms underlying it is poorly understood. We addressed this knowledge gap using low-SD sugarcane (Saccharum spp. hybrid) as a case study alongside a meta-analysis of data from 10 species. Transgenic expression of EPIDERMAL PATTERNING FACTOR 2 from Sorghum bicolor (SbEPF2) in sugarcane …

Impact Of Containment And Elevation On Created Marsh Plant Community And Ecosystem Dynamics, Kevin R. Stoner

LSU Master's Theses

Coastal marsh restoration is increasing globally, as marshes are impacted by anthropogenic impacts. Billions of dollars are allocated to marsh restoration in the Mississippi River delta where wetland loss rates are extremely high. The recovery of structural and functional attributes of created marshes varies by attribute measured and project. Here, two marshes created in 2018 and one natural marsh were used to examine how variations in hydrologic connectivity and marsh elevation influence subsurface hydrology and salinity, vegetation community structure, soil properties, accretion, and denitrification. I established a comparative field study in a created marsh contained within a higher elevation containment …

Revisiting Fr13a For Submergence Tolerance: Beyond The Sub1a Gene, Waseem Hussain, Mahender Anumalla, Abdelbagi M. Ismail, Harkamal Walia, Vistas Kumar Singh, Ajay Kohli, Sankalp Bhosale, Hans Bhardwaj

Department of Agronomy and Horticulture: Faculty Publications

Rice landrace FR13A is the original donor of the SUB1A gene. FR13A harbors hidden genetic variation that surpasses the submergence tolerance level of SUB1A. Here, we provide an overview of the unique features of FR13A associated with exceptional recovery ability that have been overlooked since the significant discovery of the SUB1 locus. We present a detailed overview of how to underpin the new genes associated with the recovery ability seen in FR13A. Finally, we propose a unique approach to develop rice cultivars that surpass submergence tolerance beyond the SUB1 locus from FR13A.

Characterizing The Quorum Sensing (Qs) System In The Model Eukaryote Chlamydomonas Reinhardtii, Kirstin Donnette Cutshaw

Theses and Dissertations

Group behaviors in microorganisms are often regulated by low-molecular weight molecules that enable them to sense population density, a signaling system known as quorum sensing (QS). QS in prokaryotes has provided insight into the role ‘social’ behaviors play in the bacterial world and refined our models of virulence, bacterial motility, and more. While less common, similar behaviors are observed in certain fungi, primarily yeasts, in which QS controls cell morphology, biofilm production, and other phenotypes. We have recently pursued the potential for QS to be more broadly distributed among unicellular eukaryotes, which could significantly alter our understanding of social behaviors …

Climate And Shared Evolutionary History Drive Trait Variation Among Species Of Neotropical Understory Monocots, Eleinis Ávila-Lovera, Oscar M. Vargas, Jennifer L. Funk, Kathleen M. Kay, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Environmental variation commonly drives functional trait diversity within species, among species, and across communities. Climate and shared evolutionary history can both influence trait–environment relationships. We studied variation in plant functional traits among closely related Costus species occurring across environmental gradients, the extent to which this variation occurs within single species, and how that variation may be influenced by shared evolutionary history. We measured leaf, aboveground stem, rhizome, and fine root traits of 17 species of Costus in eight sites in Costa Rica and Panama, which varied in elevation, temperature, and precipitation. We then assessed the relationships among traits and environmental …

Tissue‑ And Time‑Dependent Metabolite Profiles During Early Grain Development Under Normal And High Night‑Time Temperature Conditions, Nathan Abshire, Andrew L. Hauck, Harkamal Walia, Toshihiro Obata

Department of Agronomy and Horticulture: Faculty Publications

Background Wheat grain development in the first few days after pollination determines the number of endosperm cells that influence grain yield potential and is susceptible to various environmental conditions, including high night temperatures (HNTs). Flag leaves and seed-associated bracts (glumes, awn, palea, and lemma) provide nutrients to the developing seed. However, the specific metabolic roles of these tissues are uncertain, especially their dynamics at different developmental stages and the time in a day. Tissue- and time-dependent metabolite profiling may hint at the metabolic roles of tissues and the mechanisms of how HNTs affect daytime metabolic status in early grain development. …