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Articles 1 - 30 of 147
Full-Text Articles in Other Plant Sciences
Domestication Reshaped The Genetic Basis Of Inbreeding Depression In A Maize Landrace Compared To Its Wild Relative, Teosinte, Luis Fernando Samayoa, Bode A. Olukolu, Chin Jian Yang, Qiuyue Chen, Markus G. Stetter, Alessandra M. York, Jose De Jesus Sanchez-Gonzalez, Jeffrey C. Glaubitz, Peter J. Bradbury, Maria Cinta Romay, Qi Sun, Jinliang Yang, Jeffrey Ross-Ibarra, Edward S. Buckler, John F. Doebley, James B. Holland
Domestication Reshaped The Genetic Basis Of Inbreeding Depression In A Maize Landrace Compared To Its Wild Relative, Teosinte, Luis Fernando Samayoa, Bode A. Olukolu, Chin Jian Yang, Qiuyue Chen, Markus G. Stetter, Alessandra M. York, Jose De Jesus Sanchez-Gonzalez, Jeffrey C. Glaubitz, Peter J. Bradbury, Maria Cinta Romay, Qi Sun, Jinliang Yang, Jeffrey Ross-Ibarra, Edward S. Buckler, John F. Doebley, James B. Holland
Department of Agronomy and Horticulture: Faculty Publications
Inbreeding depression is the reduction in fitness and vigor resulting from mating of close relatives observed in many plant and animal species. The extent to which the genetic load of mutations contributing to inbreeding depression is due to large-effect mutations versus variants with very small individual effects is unknown and may be affected by population history. We compared the effects of outcrossing and self-fertilization on 18 traits in a landrace population of maize, which underwent a population bottleneck during domestication, and a neighboring population of its wild relative teosinte. Inbreeding depression was greater in maize than teosinte for 15 of …
Identification Of Candidate Genes And Genomic Regions Associated With Adult Plant Resistance To Stripe Rust In Spring Wheat, Amira M. I. Mourad, Mohamed A. Abou-Zeid, Shamseldeen Eltaher, P. Stephen Baenziger, Andreas Börner
Identification Of Candidate Genes And Genomic Regions Associated With Adult Plant Resistance To Stripe Rust In Spring Wheat, Amira M. I. Mourad, Mohamed A. Abou-Zeid, Shamseldeen Eltaher, P. Stephen Baenziger, Andreas Börner
Department of Agronomy and Horticulture: Faculty Publications
Wheat stripe rust (caused by Puccinia striiformis f. sp. tritici) is a major disease that damages wheat plants and affects wheat yield all over the world. In recent years, stripe rust became a major problem that affects wheat yield in Egypt. New races appeared and caused breakdowns in the resistant genotypes. To improve resistance in the Egyptian genotypes, new sources of resistance are urgently needed. In the recent research, a set of 95 wheat genotypes collected from 19 countries, including Egypt, were evaluated for their resistance against the Egyptian race(s) of stripe rust under field conditions in the two …
Relationships Among College-Level Science Course Enrollment, Environmental Perception, And Pro-Environmental Attitude: Evidence From The Us General Social Survey, Mazbahul G. Ahamad, Fahian Tanin
Relationships Among College-Level Science Course Enrollment, Environmental Perception, And Pro-Environmental Attitude: Evidence From The Us General Social Survey, Mazbahul G. Ahamad, Fahian Tanin
Department of Agronomy and Horticulture: Faculty Publications
Understanding pro-environmental attitudes is critical to encouraging pollution-minimizing behaviors. Therefore, identifying associated factors is essential for understanding different types of pro-environmental attitudes. We aimed to investigate the associations among individuals’ college-level science course enrollment and their perceptions of the level of spending to improve and protect the environment, as well as their pro-environmental attitudes. We used nationwide population-based cross-sectional survey data from 2,348 individuals obtained from the General Social Survey in the United States. An ordered logistic model was used to examine the associations among college-level science course enrollment, environmental perception, and pro-environmental attitude. We found that science course enrollment …
Cold Conditioned: Discovery Of Novel Alleles For Low-Temperature Tolerance In The Vavilov Barley Collection, Ahmad H. Sallam, Kevin P. Smith, Gongshe Hu, Jamie Sherman, Peter Stephen Baeziger, Jochum Wiersma, Carl Duley, Eric J. Stockinger, Mark E. Sorrells, Tamas Szinyei, Igor G. Loskutov, Olga N. Kovaleva, Jed Eberly, Brian J. Steffenson
Cold Conditioned: Discovery Of Novel Alleles For Low-Temperature Tolerance In The Vavilov Barley Collection, Ahmad H. Sallam, Kevin P. Smith, Gongshe Hu, Jamie Sherman, Peter Stephen Baeziger, Jochum Wiersma, Carl Duley, Eric J. Stockinger, Mark E. Sorrells, Tamas Szinyei, Igor G. Loskutov, Olga N. Kovaleva, Jed Eberly, Brian J. Steffenson
Department of Agronomy and Horticulture: Faculty Publications
Climate changes leading to higher summer temperatures can adversely affect cool season crops like spring barley. In the Upper Midwest region of the United States, one option for escaping this stress factor is to plant winter or facultative type cultivars in the autumn and then harvest in early summer before the onset of high-temperature stress. However, the major challenge in breeding such cultivars is incorporating sufficient winter hardiness to survive the extremely low temperatures that commonly occur in this production region. To broaden the genetic base for winter hardiness in the University of Minnesota breeding program, 2,214 accessions from the …
Sustainable Intensification For A Larger Global Rice Bowl, Shen Yuan, Bruce A. Linquist, Lloyd T. Wilson, Kenneth G. Cassman, Alexander M. Stuart, Valerien Pede, Berta Miro, Kazuki Saito, Nurwulan Agustiani, Vina Eka Aristya, Leonardus Y. Krisnadi, Alencar Junior Zanon, Alexandre Bryan Heinemann, Gonzalo Carracelas, Nataraja Subash, Pathula S. Brahmanand, Tao Li, Shaobing Peng, Patricio Grassini
Sustainable Intensification For A Larger Global Rice Bowl, Shen Yuan, Bruce A. Linquist, Lloyd T. Wilson, Kenneth G. Cassman, Alexander M. Stuart, Valerien Pede, Berta Miro, Kazuki Saito, Nurwulan Agustiani, Vina Eka Aristya, Leonardus Y. Krisnadi, Alencar Junior Zanon, Alexandre Bryan Heinemann, Gonzalo Carracelas, Nataraja Subash, Pathula S. Brahmanand, Tao Li, Shaobing Peng, Patricio Grassini
Department of Agronomy and Horticulture: Faculty Publications
Future rice systems must produce more grain while minimizing the negative environmental impacts. A key question is how to orient agricultural research & development (R&D) programs at national to global scales to maximize the return on investment. Here we assess yield gap and resource-use efficiency (including water, pesticides, nitrogen, labor, energy, and associated global warming potential) across 32 rice cropping systems covering half of global rice harvested area. We show that achieving high yields and high resource-use efficiencies are not conflicting goals. Most cropping systems have room for increasing yield, resource-use efficiency, or both. In aggregate, current total rice production …
Ecological And Morphological Differentiation Among Coi Haplotype Groups In The Plant Parasitic Nematode Species Mesocriconema Xenoplax, Julianne N. Matczyszyn, Timothy Harris, Kirsten S. Powers, Sydney E. Everhart, Thomas O. Powers
Ecological And Morphological Differentiation Among Coi Haplotype Groups In The Plant Parasitic Nematode Species Mesocriconema Xenoplax, Julianne N. Matczyszyn, Timothy Harris, Kirsten S. Powers, Sydney E. Everhart, Thomas O. Powers
Department of Plant Pathology: Faculty Publications
DNA barcoding with the mitochondrial COI gene reveals distinct haplotype subgroups within the monophyletic and parthenogenetic nematode species, Mesocriconema xenoplax. Biological attributes of these haplotype groups (HG) have not been explored. An analysis of M. xenoplax from 40 North American sites representing both native plant communities and agroecosystems was conducted to identify possible subgroup associations with ecological, physiological, or geographic factors. A dataset of 132 M. xenoplax specimens was used to generate sequences of a 712 bp region of the cytochrome oxidase subunit I gene. Maximum-likelihood and Bayesian phylogenies recognized seven COI HG (≥99/0.99 posterior probability/bootstrap value). Species delimitation …
Ecological And Morphological Differentiation Among Coi Haplotype Groups In The Plant Parasitic Nematode Species Mesocriconema Xenoplax, Julianne N. Matczyszyn, Timothy Harris, Kirsten S. Powers, Sydney E. Everhart, Tom Powers
Ecological And Morphological Differentiation Among Coi Haplotype Groups In The Plant Parasitic Nematode Species Mesocriconema Xenoplax, Julianne N. Matczyszyn, Timothy Harris, Kirsten S. Powers, Sydney E. Everhart, Tom Powers
Department of Plant Pathology: Faculty Publications
DNA barcoding with the mitochondrial COI gene reveals distinct haplotype subgroups within the monophyletic and parthenogenetic nematode species, Mesocriconema xenoplax. Biological attributes of these haplotype groups (HG) have not been explored. An analysis of M. xenoplax from 40 North American sites representing both native plant communities and agroecosystems was conducted to identify possible subgroup associations with ecological, physiological, or geographic factors. A dataset of 132 M. xenoplax specimens was used to generate sequences of a 712 bp region of the cytochrome oxidase subunit I gene. Maximum-likelihood and Bayesian phylogenies recognized seven COI HG (≥99/0.99 posterior probability/bootstrap value). Species …
Climate And Agronomy, Not Genetics, Underpin Recent Maize Yield Gains In Favorable Environments, Gonzalo Rizzo, Juan Pablo Monzon, Fatima Amor Tenorio, Réka Howard, Kenneth G. Cassman, Patricio Grassini
Climate And Agronomy, Not Genetics, Underpin Recent Maize Yield Gains In Favorable Environments, Gonzalo Rizzo, Juan Pablo Monzon, Fatima Amor Tenorio, Réka Howard, Kenneth G. Cassman, Patricio Grassini
Department of Agronomy and Horticulture: Faculty Publications
Quantitative understanding of factors driving yield increases of major food crops is essential for effective prioritization of research and development. Yet previous estimates had limitations in distinguishing among contributing factors such as changing climate and new agronomic and genetic technologies. Here, we distinguished the separate contribution of these factors to yield advance using an extensive database collected from the largest irrigated maize-production domain in the world located in Nebraska (United States) during the 2005-to-2018 period. We found that 48% of the yield gain was associated with a decadal climate trend, 39% with agronomic improvements, and, by difference, only 13% with …
Above- And Below-Ground Functional Trait Coordination In The Neotropical Understory Genus Costus, Eleinis Ávila-Lovera, Gregory R. Goldsmith, Kathleen M. Kay, Jennifer L. Funk
Above- And Below-Ground Functional Trait Coordination In The Neotropical Understory Genus Costus, Eleinis Ávila-Lovera, Gregory R. Goldsmith, Kathleen M. Kay, Jennifer L. Funk
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
The study of plant functional traits and variation among and within species can help illuminate functional coordination and trade-offs in key processes that allow plants to grow, reproduce and survive. We studied 20 leaf, above-ground stem, below-ground stem and fine-root traits of 17 Costus species from forests in Costa Rica and Panama to answer the following questions: (i) Do congeneric species show above-ground and below-ground trait coordination and trade-offs consistent with theory of resource acquisition and conservation? (ii) Is there correlated evolution among traits? (iii) Given the diversity of habitats over which Costus occurs, what is the relative contribution of …
Assessing Freezing Effect On Kiwifruit Cultivars And Mapping Suitable Areas For Growing The Crop In Eastern Texas, Lais De Oliveira Machado
Assessing Freezing Effect On Kiwifruit Cultivars And Mapping Suitable Areas For Growing The Crop In Eastern Texas, Lais De Oliveira Machado
Electronic Theses and Dissertations
Kiwifruit is a perennial vine originating from China where it has been grown for centuries. In the United States, green kiwifruit (Actinidia deliciosa) is primarily produced commercially in California. They are fuzzy, green fleshed and well known in the marketplace. Kiwifruit plants require low to moderate soil pH, adequate winter chilling and adequate precipitation to guarantee plant development and good fructification. Actinidia chinesis or golden kiwifruit are smooth skinned, feature golden flesh and are a more recent introduction into the global market. Kiwifruit crops have attributes that favor production in east Texas, including low pest problems, current long …
Seeding Rate Effects On Forage Mass And Vegetation Dynamics Of Cool-Season Grass Sod Interseeded With Sorghum-Sudangrass, John A. Guretzky, D. D. Redfearn
Seeding Rate Effects On Forage Mass And Vegetation Dynamics Of Cool-Season Grass Sod Interseeded With Sorghum-Sudangrass, John A. Guretzky, D. D. Redfearn
Department of Agronomy and Horticulture: Faculty Publications
Interseeding annual warm-season grasses into perennial cool-season grasses has the potential to increase summer forage mass and nutritive value. Knowledge of how seeding rate affects annual warm-season grass establishment, forage mass, and vegetation dynamics remains limited. From 2016–2017, we conducted a field experiment evaluating the effects of seeding rates on sorghum-sudangrass (Sorghum bicolor x S. bicolor var. sudanense) density and forage mass and on the frequency of occurrence of plant species in cool-season grass sod in Lincoln, NE. The experiment had a completely randomized design consisting of six replicates of four seeding rates [0, 14, 28, and 35 …
Impact Of Urbanization Trends On Production Of Key Staple Crops, José F. Andrade, Kenneth G. Cassman, Juan I. Rattalino Edreira, Fahmuddin Agus, Abdullahi Bala, Nanyan Deng, Patricio Grassini
Impact Of Urbanization Trends On Production Of Key Staple Crops, José F. Andrade, Kenneth G. Cassman, Juan I. Rattalino Edreira, Fahmuddin Agus, Abdullahi Bala, Nanyan Deng, Patricio Grassini
Department of Agronomy and Horticulture: Faculty Publications
Urbanization has appropriated millions of hectares of cropland, and this trend will persist as cities continue to expand. We estimate the impact of this conversion as the amount of land needed elsewhere to give the same yield potential as determined by differences in climate and soil properties. Robust spatial upscaling techniques, well-validated crop simulation models, and soil, climate, and cropping system databases are employed with a focus on populous countries with high rates of land conversion. We find that converted cropland is 30–40% more productive than new cropland, which means that projection of food production potential must account for expected …
Influence Of Surfactant-Humectant Adjuvants On Physical Properties, Droplet Size, And Efficacy Of Glufosinate Formulations, Estefania G. Polli, Guilherme S. Alves, Jesaelen Gizotti De Moraes, Greg Robert Kruger
Influence Of Surfactant-Humectant Adjuvants On Physical Properties, Droplet Size, And Efficacy Of Glufosinate Formulations, Estefania G. Polli, Guilherme S. Alves, Jesaelen Gizotti De Moraes, Greg Robert Kruger
Department of Agronomy and Horticulture: Faculty Publications
Glufosinate efficacy is inconsistent among weed species and under environmental conditions that favor rapid droplet drying. Surfactant-humectant adjuvants could maximize glufosinate efficacy by increasing wetting and penetration into the leaf surface while decreasing evaporation rate (ER). However, there is a lack of information in the literature about the interaction of surfactant-humectants adjuvants with glufosinate. The objective of this study was to investigate the influence of surfactanthumectant adjuvants on the physical properties, droplet size, and efficacy of two glufosinate formulations. Laboratory, greenhouse, and field studies were conducted at the Pesticide Application Technology Laboratory of the University of Nebraska- Lincoln. Treatment design …
Prosopis Glandulosa Persistence Is Facilitated By Differential Protection Of Buds During Low- And High-Energy Fires, Heath D. Starns, Carissa L. Wonkka, Matthew B. Dickinson, Alexandra G. Lodge, Morgan L. Treadwell, Kathleen L. Kavanagh, Douglas R. Tolleson, Dirac L. Twidwell Jr, William E. Rogers
Prosopis Glandulosa Persistence Is Facilitated By Differential Protection Of Buds During Low- And High-Energy Fires, Heath D. Starns, Carissa L. Wonkka, Matthew B. Dickinson, Alexandra G. Lodge, Morgan L. Treadwell, Kathleen L. Kavanagh, Douglas R. Tolleson, Dirac L. Twidwell Jr, William E. Rogers
Department of Agronomy and Horticulture: Faculty Publications
Rangelands worldwide have experienced significant shifts from grass-dominated to woody-plant dominated states over the past century. In North America, these shifts are largely driven by overgrazing and landscape-scale fire suppression. Such shifts reduce productivity for livestock, can have broad-scale impacts to biodiversity, and are often difficult to reverse. Restoring grass dominance often involves restoring fire as an ecological process. However, many resprouting woody plants persist following disturbance, including fire, by resprouting from protected buds, rendering fire ineffective for reducing resprouting woody plant density. Recent research has shown that extreme fire (high-energy fires during periods of water stress) may reduce resprouting …
Insights Into Using Plants In Management Of Viral Diseases., Vyacheslav Dushenkov, Anna Dushenkov
Insights Into Using Plants In Management Of Viral Diseases., Vyacheslav Dushenkov, Anna Dushenkov
Publications and Research
Botanical therapeutics possess a unique potential in the treatment of viral diseases. The pharmacological base and clinical use of botanical therapeutics have been extensively reviewed. The mode of action(s) may be built either on the direct interference with the virus's ability to enter human cells, virus replication, or exerting immune-modulatory and anti-inflammatory effects. The adjuvant treatment with botanical therapeutics has the potential to result in advances in symptom resolution, decrease in disease burden and shortening its duration.
Genome-Wide Dna Polymorphism Analysis And Molecular Marker Development For The Setaria Italica Variety “Ssr41” And Positional Cloning Of The Setaria White Leaf Sheath Gene Siwls1, Hui Zhang, Sha Tang, James C. Schnable, Qiang He, Yuanzhu Gao, Mingzhao Luo, Guanqing Jia, Baili Feng, Hui Zhi, Xianmin Diao
Genome-Wide Dna Polymorphism Analysis And Molecular Marker Development For The Setaria Italica Variety “Ssr41” And Positional Cloning Of The Setaria White Leaf Sheath Gene Siwls1, Hui Zhang, Sha Tang, James C. Schnable, Qiang He, Yuanzhu Gao, Mingzhao Luo, Guanqing Jia, Baili Feng, Hui Zhi, Xianmin Diao
Department of Agronomy and Horticulture: Faculty Publications
Genome-wide DNA polymorphism analysis and molecular marker development are important for forward genetics research and DNA marker-assisted breeding. As an ideal model system for Panicoideae grasses and an important minor crop in East Asia, foxtail millet (Setaria italica) has a high-quality reference genome as well as large mutant libraries based on the “Yugu1” variety. However, there is still a lack of genetic and mutation mapping tools available for forward genetics research on S. italica. Here, we screened another S. italica genotype, “SSR41”, which is morphologically similar to, and readily cross-pollinates with, “Yugu1”. High-throughput resequencing of “SSR41” …
A Chickpea Genetic Variation Map Based On The Sequencing Of 3,366 Genomes, Rajeev K. Varshney, Manish Roorkiwal, Shuai Sun, Prasad Bajaj, Annapurna Chitikineni, Mahendar Thudi, Narendra P. Singh, Xiao Du, Hari D. Upadhyaya, Diego Jarquin
A Chickpea Genetic Variation Map Based On The Sequencing Of 3,366 Genomes, Rajeev K. Varshney, Manish Roorkiwal, Shuai Sun, Prasad Bajaj, Annapurna Chitikineni, Mahendar Thudi, Narendra P. Singh, Xiao Du, Hari D. Upadhyaya, Diego Jarquin
Department of Agronomy and Horticulture: Faculty Publications
Zero hunger and good health could be realized by 2030 through effective conservation, characterization and utilization of germplasm resources1 . So far, few chickpea (Cicerarietinum) germplasm accessions have been characterized at the genome sequence level2 . Here we present a detailed map of variation in 3,171 cultivated and 195 wild accessions to provide publicly available resources for chickpea genomics research and breeding. We constructed a chickpea pan-genome to describe genomic diversity across cultivated chickpea and its wild progenitor accessions. A divergence tree using genes present in around 80% of individuals in one species allowed us to estimate the divergence of …
Global Distribution And Richness Of Armillaria And Related Species Inferred From Public Databases And Amplicon Sequencing Datasets, Rachel A. Koch, Joshua Herr
Global Distribution And Richness Of Armillaria And Related Species Inferred From Public Databases And Amplicon Sequencing Datasets, Rachel A. Koch, Joshua Herr
Department of Plant Pathology: Faculty Publications
Armillaria is a globally distributed fungal genus most notably composed of economically important plant pathogens that are found predominantly in forest and agronomic systems. The genus sensulato has more recently received attention for its role in woody plant decomposition and in mycorrhizal symbiosis with specific plants. Previous phylogenetic analyses suggest that around 50 species are recognized globally. Despite this previous work, no studies have analyzed the global species richness and distribution of the genus using data derived from fungal community sequencing datasets or barcoding initiatives. To assess the global diversity and species richness of Armillaria, we mined publicly available sequencing …
Using Uav Technology Paired With Multispectral Cameras To Assess Crown Rust Epidemics In Oats, Turner A. Graham
Using Uav Technology Paired With Multispectral Cameras To Assess Crown Rust Epidemics In Oats, Turner A. Graham
LSU Master's Theses
Crown rust, caused by Puccinia cornonata f. sp. avenae, is a common disease of oats (Avena sativa) found virtually everywhere oats are cultivated. This disease has caused yield losses of 10 to 40% worldwide. Early detection is important for effective management. A more recently utilized technology in agriculture is unmanned aerial vehicles (UAVs). UAVs, or drones, equipped with cameras are now being used as a resource to take images of fields to identify pests and other issues that may be occurring. Normalized differentiated vegetative index (NDVI) is a numerical indicator used to determine the vegetative health of …
Nebline, Nov./Dec.2021
NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County
Holiday Food Tips
Recipes of the Month
Traditions Rituals and Routines During a COVID-19 Holiday Season
Wise Use of Private Water and Wastewater Systems Can Make the Holidays More Peaceful
Dormant Lawn Seeding
Garden Guide: Things to Do This Month
4-H Thanks 2021 Sponsors
Farmland Trends and Lease Considerations for 2022 Workshop
Upcoming Early Childhood Trainings
Ag Society Annual Election & Meeting
Heart of 4-H Volunteer Award, Jamie Wood
Heart of 4-H Volunteer Award, Julia Plugge
Slime, Jelly Worms & Goo: Food Science 4-H Workshop, Dec. 4
Finger Knit 4-H Workshop, Dec. 11
2021 4-H Horse Awards Night
4-H Announcements …
University Research On Winter Growing Of Container-Grown Strawberries Translates To Grower's Farm Trial, Stacy A. Adams, Ellen T. Paparozzi, Ryan Pekarek, Dave P. Lambe, George Meyer, M. Elizabeth Conley, Paul Read
University Research On Winter Growing Of Container-Grown Strawberries Translates To Grower's Farm Trial, Stacy A. Adams, Ellen T. Paparozzi, Ryan Pekarek, Dave P. Lambe, George Meyer, M. Elizabeth Conley, Paul Read
Department of Agronomy and Horticulture: Faculty Publications
Strawberries are only seasonally available in Nebraska (NE). If an affordable heated structure can be designed, then opportunity exists to increase on-farm income by producing strawberries off-season during high-value market periods. A series of university greenhouse trials were conducted from 2010 to 2012. The varieties Evie-2 and Seascape were identified as being most productive under a low technology growing scheme. A new research project, which ran from fall to late spring (2013–2014), was designed to determine if this production scheme would translate to a commercial grower. Varieties Seascape and Evie-2 (each at two grades indicated by +) and San Andreas …
Growing Faba Beans On The South Coast Of Western Australia, Sarah Belli, Carla Milazzo, Emma Pearse, King Yin Lui, Grace Williams, Jeremy Lemon
Growing Faba Beans On The South Coast Of Western Australia, Sarah Belli, Carla Milazzo, Emma Pearse, King Yin Lui, Grace Williams, Jeremy Lemon
Grain and other field crops published reports
Editors: Megan Abrahams, Andrew Blake and Vanessa Stewart (DPIRD)
Foreword
Thirty-three years ago I started work in Esperance on broadleaf crops. One of the best things my boss set up for me was arranging visits with several lupin farmers so I could follow their crops from seeding, through the growing season, to harvest. It was a great way to quickly get an idea of the choices farmers make and the reasons why.
With today’s busy lives, most farmers would be hard pressed to have the luxury of visiting many other farmers multiple times to learn how to grow a crop. …
Control Of Acetolactate Synthase Inhibitor/Glyphosate-Resistant Palmer Amaranth (Amaranthus Palmeri) In Isoxaflutole/Glufosinate/Glyphosate-Resistant Soybean, Jasmine Mausbach, Suat Irmak, Debalin Sarangi, John L. Lindquist, Amit J. Jhala
Control Of Acetolactate Synthase Inhibitor/Glyphosate-Resistant Palmer Amaranth (Amaranthus Palmeri) In Isoxaflutole/Glufosinate/Glyphosate-Resistant Soybean, Jasmine Mausbach, Suat Irmak, Debalin Sarangi, John L. Lindquist, Amit J. Jhala
Department of Agronomy and Horticulture: Faculty Publications
Palmer amaranth is the most problematic and troublesome weed in agronomic cropping systems in the United States. Acetolactate synthase (ALS) inhibitor and glyphosate-resistant (GR) Palmer amaranth has been confirmed in Nebraska and it is widespread in several counties. Soybean resistant to isoxaflutole/glufosinate/glyphosate has been developed that provides additional herbicide site of action for control of herbicide-resistant weeds. The objectives of this study were to evaluate herbicide programs for control of ALS inhibitor/GR Palmer amaranth and their effect on Palmer amaranth density and biomass, as well as soybean injury and yield in isoxaflutole/glufosinate/glyphosate-resistant soybean. Field experiments were conducted in a grower's …
Transcriptomics Reveals The Putative Mycoparasitic Strategy Of The Mushroom Entoloma Abortivum On Species Of The Mushroom Genus Armillaria, Rachel A. Koch, Joshua Herr
Transcriptomics Reveals The Putative Mycoparasitic Strategy Of The Mushroom Entoloma Abortivum On Species Of The Mushroom Genus Armillaria, Rachel A. Koch, Joshua Herr
Department of Plant Pathology: Faculty Publications
During mycoparasitism, a fungus—the host—is parasitized by another fungus—the mycoparasite. The genetic underpinnings of these relationships have been best characterized in ascomycete fungi. However, within basidiomycete fungi, there are rare instances of mushroom-forming species parasitizing the reproductive structures, or sporocarps, of other mushroom-forming species, which have been rarely investigated on a genetic level. One of the most enigmatic of these occurs between Entoloma abortivum and species of Armillaria, where hyphae of E. abortivum are hypothesized to disrupt the development of Armillaria sporocarps, resulting in the formation of carpophoroids. However, it remains unknown whether carpophoroids are the direct result of a …
Identification And Validation Of High Ld Hotspot Genomic Regions Harboring Stem Rust Resistant Genes On 1b, 2a (Sr38), And 7b Chromosomes In Wheat, Shamseldeen Eltaher, Amira M.I. Mourad, P Stephen Baenziger, Stephen Wegulo, Vikas Belamkar, Ahmed Sallam
Identification And Validation Of High Ld Hotspot Genomic Regions Harboring Stem Rust Resistant Genes On 1b, 2a (Sr38), And 7b Chromosomes In Wheat, Shamseldeen Eltaher, Amira M.I. Mourad, P Stephen Baenziger, Stephen Wegulo, Vikas Belamkar, Ahmed Sallam
Department of Agronomy and Horticulture: Faculty Publications
Stem rust caused by Puccinia graminis f. sp. tritici Eriks. is an important disease of common wheat globally. The production and cultivation of genetically resistant cultivars are one of the most successful and environmentally friendly ways to protect wheat against fungal pathogens. Seedling screening and genome-wide association study (GWAS) were used to determine the genetic diversity of wheat genotypes obtained on stem rust resistance loci. At the seedling stage, the reaction of the common stem rust race QFCSC in Nebraska was measured in a set of 212 genotypes from F3:6 lines. The results indicated that 184 genotypes (86.8%) had different …
Spatial Frameworks For Robust Estimation Of Yield Gaps, Juan I. Rattalino Edreira, José F. Andrade, Kenneth G. Cassman, Martin K. Ittersum, Marloes P. Van Loon, Patricio Grassini
Spatial Frameworks For Robust Estimation Of Yield Gaps, Juan I. Rattalino Edreira, José F. Andrade, Kenneth G. Cassman, Martin K. Ittersum, Marloes P. Van Loon, Patricio Grassini
Department of Agronomy and Horticulture: Faculty Publications
Food security interventions and policies need reliable estimates of crop production and the scope to enhance production on existing cropland. Here we assess the performance of two widely used ‘top-down’ gridded frameworks (Global Agro-ecological Zones and Agricultural Model Intercomparison and Improvement Project) versus an alternative ‘bottom-up’ approach (Global Yield Gap Atlas). The Global Yield Gap Atlas estimates extra production potential locally for a number of sites representing major breadbaskets and then upscales the results to larger spatial scales. We find that estimates from top-down frameworks are alarmingly unlikely, with estimated potential production being lower than current farm production at some …
Development Of A Genomic Prediction Pipeline For Maintaining Comparable Sample Sizes In Training And Testing Sets Across Prediction Schemes Accounting For The Genotype-By-Environment Interaction, Reyna Persa, Martin Grondona, Diego Jarquin
Development Of A Genomic Prediction Pipeline For Maintaining Comparable Sample Sizes In Training And Testing Sets Across Prediction Schemes Accounting For The Genotype-By-Environment Interaction, Reyna Persa, Martin Grondona, Diego Jarquin
Department of Agronomy and Horticulture: Faculty Publications
The global growing population is experiencing challenges to satisfy the food chain supply in a world that faces rapid changes in environmental conditions complicating the development of stable cultivars. Emergent methodologies aided by molecular marker information such as marker assisted selection (MAS) and genomic selection (GS) have been widely adopted to assist the development of improved genotypes. In general, the implementation of GS is not straightforward, and it usually requires cross-validation studies to find the optimum set of factors (training set sizes, number of markers, quality control, etc.) to use in real breeding applications. In most cases, these different scenarios …
A Machine Learning Interpretation Of The Contribution Of Foliar Fungicides To Soybean Yield In The North‐Central United States, Denis A. Shah, Thomas R. Butts, Spyridon Mourtzinis, Juan I. Rattalino Edreira, Patricio Grassini, Shawn P. Conley, Paul D. Esker
A Machine Learning Interpretation Of The Contribution Of Foliar Fungicides To Soybean Yield In The North‐Central United States, Denis A. Shah, Thomas R. Butts, Spyridon Mourtzinis, Juan I. Rattalino Edreira, Patricio Grassini, Shawn P. Conley, Paul D. Esker
Department of Agronomy and Horticulture: Faculty Publications
Foliar fungicide usage in soybeans in the north-central United States increased steadily over the past two decades. An agronomically-interpretable machine learning framework was used to understand the importance of foliar fungicides relative to other factors associated with realized soybean yields, as reported by growers surveyed from 2014 to 2016. A database of 2738 spatially referenced fields (of which 30% had been sprayed with foliar fungicides) was fit to a random forest model explaining soybean yield. Latitude (a proxy for unmeasured agronomic factors) and sowing date were the two most important factors associated with yield. Foliar fungicides ranked 7th out of …
A Phytobacterial Tir Domain Effector Manipulates Nad+ To Promote Virulence, Samuel Eastman, Thomas Smith, Mark A. Zaydman, Panya Kim, Samuel Martinez, Neha Damaraju, Aaron Diantonio, Jeffrey Milbrandt, Thomas E. Clemente, James R. Alfano, Ming Guo
A Phytobacterial Tir Domain Effector Manipulates Nad+ To Promote Virulence, Samuel Eastman, Thomas Smith, Mark A. Zaydman, Panya Kim, Samuel Martinez, Neha Damaraju, Aaron Diantonio, Jeffrey Milbrandt, Thomas E. Clemente, James R. Alfano, Ming Guo
Department of Plant Pathology: Faculty Publications
- The Pseudomonas syringae DC3000 type III effector HopAM1 suppresses plant immunity and contains a Toll/interleukin-1 receptor (TIR) domain homologous to immunity-related TIR domains of plant nucleotide-binding leucine-rich repeat receptors that hydrolyze nicotinamide adenine dinucleotide (NAD+) and activate immunity. In vitro and in vivo assays were conducted to determine if HopAM1 hydrolyzes NAD+ and if the activity is essential for HopAM1’s suppression of plant immunity and contribution to virulence.
- HPLC and LC-MS were utilized to analyze metabolites produced from NAD+ by HopAM1 in vitro and in both yeast and plants. Agrobacterium-mediated transient expression and in planta …
Implications Of Cover Crop Planting And Termination Timing On Rainfed Maize Production In Semi-Arid Cropping Systems, Alexandre T. Rosa, Cody Creech, Roger W. Elmore, Daran Rudnick, John L. Lindquist, Miguel Fudolig, Liberty E. Butts, Rodrigo Werle
Implications Of Cover Crop Planting And Termination Timing On Rainfed Maize Production In Semi-Arid Cropping Systems, Alexandre T. Rosa, Cody Creech, Roger W. Elmore, Daran Rudnick, John L. Lindquist, Miguel Fudolig, Liberty E. Butts, Rodrigo Werle
Department of Agronomy and Horticulture: Faculty Publications
Despite the potential to increase soil organic matter, cycle soil nutrients, and suppress weeds, there is a concern that cover crops (CCs) soil water use negatively impacts subsequent crops in water-limited environments. Cover crop management practices such as planting and termination timing may mitigate the detrimental impacts of CCs in semi-arid cropping systems. To determine the effects of CCs under water-limited environments, we evaluated the total CC biomass produced in the fall and spring, soil water content during the subsequent maize growing season, weed density and biomass, crop residue, and soil nutrients at the maize V6 development stage, and maize …