Other Plant Sciences Commons^™

Woody Plant Encroachment And The Sustainability Of Priority Conservation Areas, Dillon Fogarty, Caleb P. Roberts, Daniel R. Uden, Victoria M. Donovan, Craig R. Allen, David E. Naugle, Matthew O. Jones, Brady W. Allred, Dirac L. Twidwell Jr

Department of Agronomy and Horticulture: Faculty Publications

Woody encroachment is a global driver of grassland loss and management to counteract encroachment represents one of the most expensive conservation practices implemented in grasslands. Yet, outcomes of these practices are often unknown at large scales and this constrains practitioner’s ability to advance conservation. Here, we use new monitoring data to evaluate outcomes of grassland conservation on woody encroachment for Nebraska’s State Wildlife Action Plan, a statewide effort that targets management in Biologically Unique Landscapes (BULs) to conserve the state’s natural communities. We tracked woody cover trajectories for BULs and compared BUL trajectories with those in non-priority landscapes (non-BULs) to …

Is Allelopathy From Winter Cover Crops Affecting Row Crops?, Katja Koehler-Cole, Sydney Everhart, Yan Gu, Christopher A. Proctor, Margarita Marroquin-Guzman, Daren Redfearn, Roger W. Elmore

Department of Agronomy and Horticulture: Faculty Publications

Cover crops (CC) have been explored in corn (Zea mays L.), cotton (Gossypium hirsutum L.), soybean [Glycine max (L.) Merr.], and wheat (Triticum aestivum L.) systems for their allelopathic potential to control weeds. However, allelopathic compounds may negatively affect these row crops by reducing germination, emergence, and grain yields. We reviewed studies that document allelopathic effects of CC on subsequent row crops in field and laboratory settings. We summarize the influence of CC management, including biomass production, planting and termination timing on allelochemical quantity. Our review found few studies documenting allelopathic effects of CC on row …

Winter Wheat Residue Impact On Soil Water Storage And Subsequent Corn Yield, Luana Machado Simão, Amanda Easterly, Greg Kruger, Cody Creech

Department of Agronomy and Horticulture: Faculty Publications

Standing winter wheat (Triticum aestivum L.) residue can capture snow, reduce soil erosion and water evaporation, and increase crop yields in semi-arid environments. Solid-stemmed winter wheat (SSWW) varieties may remain standing longer in the field; however, SSWW consistently yields less than conventional hollow-stemmed winter wheat (HSWW). This research investigates if the negative economic impact of yield loss of SSWW may be overcome by increasing the subsequent corn (Zea mays L.) yield due to increased snow capture and soil moisture. The experiment covered two cycles of a wheat–corn–fallow rotation in two separate fields between 2016 and 2019 near Sidney, NE. …

Improvement Of Smallholder Farming Systems In Africa, Charles S. Wortmann, Tilahun Amede, Mateete Bekunda, Keziah Ndung’U-Magiroi, Patricia Masikati, Sieglinde S. Snapp, Zachary P. Stewart, Mark Westgate, Zacarie Zida, Charles E. Kome

Department of Agronomy and Horticulture: Faculty Publications

This forum paper provides a synthesis and discussion of 14 categories of lessons learned from experiences for achieving farm-level impact with smallholder farm- ers in Africa. These lessons were reported in a symposium hosted by the Agron- omy in Africa community of the American Society of Agronomy. The lessons, listed in order of frequency of reporting, were the need to: have adequate infras- tructure and services; enable spontaneous adoption; have multi-disciplinary and institutional collaboration; build on previous adoption of good agronomic practices (GAP); have farmer participation in research; encourage and learn from smallholder adaptations; make GAP promotion demand-driven; allow GAP …

Soil Aggregation As Affected By Application Of Diverse Organic Materials, Maman Garba, Charles S. Wortmann, Humberto Blanco-Canqui

Department of Agronomy and Horticulture: Faculty Publications

Application of organic materials can amend soil for improved water infiltration and reduced erodibility with effects varying with soil properties and the organic amendment type and rate. The effects of four livestock manures, three municipal biosolids, and one industrial by-product on dry and wet soil aggregate stability were evaluated at six sites in Nebraska. The amendments had similar C/N ratios but the biosolids had relatively high concentrations of lignin and cellulose. Soil organic matter (SOM) ranged from 21 to 65 g kg−1 and soils were silty clay loam, silt loam, or loamy sand. Soil was sampled for the 0- to …

Strategic Switchgrass (Panicum Virgatum) Production Within Row Cropping Systems: Regional-Scale Assessment Of Soil Erosion Loss And Water Runoff Impacts, Enheng Wang, R. M. Cruse, Bharat Sharma-Acharya, Daryl E. Herzmann, Brian K. Gelder, David E. James, Dennis C. Flanagan, Humberto Blanco-Canqui, Robert B. Mitchell, David Laird

Department of Agronomy and Horticulture: Faculty Publications

A strong need exists for tools to assess the efficacy of conservation practices across large regions supporting informed policy decisions that may lead to better soil and water conservation while optimizing agricultural production options. Perennial warm-season grasses (WSGs) such as switchgrass (Panicum virgatum), can be grown on marginally productive and/or environmentally sensitive lands to meet growing bioenergy demands while reducing water runoff and soil erosion compared to current row crop systems. Quantifying the soil and water conservation effects of WSG when strategically placed on the landscape would help support decisions favoring both economic and environmental benefits. We used the Daily …

Soybean Nodule-Associated Non-Rhizobial Bacteria Inhibit Plant Pathogens And Induce Growth Promotion In Tomato, Serkan Tokgöz, Dilip K. Lakshman, Mahmoud H. Ghozlan, Hasan Pinar, Daniel P. Roberts, Amitava Mitra

Department of Agronomy and Horticulture: Faculty Publications

The root nodules are a unique environment formed on legume roots through a highly specific symbiotic relationship between leguminous plants and nodule-inducing bacteria. Previously, Rhizobia were presumed to be the only group of bacteria residing within nodules. However, recent studies discovered diverse groups of bacteria within the legume nodules. In this report soybean nodule-associated bacteria were studied in an effort to identify beneficial bacteria for plant disease control and growth promotion. Analysis of surface-sterilized single nodules showed bacterial diversity of the nodule microbiome. Five hundred non-rhizobial colonies from 10 nodules, 50 colonies per nodule, were tested individually against the tomato …

Foliar Micronutrient Application For High-Yield Maize, Zachary P. Stewart, Ellen T. Paparozzi, Charles S. Wortmann, Prakash Kumar Jha, Charles A. Shapiro

Department of Agronomy and Horticulture: Faculty Publications

Nebraska soils are generally micronutrient sufficient. However, critical levels for current yields have not been validated. From 2013 to 2015, 26 on-farm paired comparison strip-trials were conducted across Nebraska to test the effect of foliar-applied micronutrients on maize (Zea mays L.) yield and foliar nutrient concentrations. Treatments were applied from V6 to V14 at sites with 10.9 to 16.4 Mg ha−1 yield. Soils ranged from silty clays to fine sands. Soil micronutrient availability and tissue concentrations were all above critical levels for deficiency. Significant grain yield increases were few. Micronutrient concentrations for leaf growth that occurred after foliar applications were …

Estimating Economic Minimums Of Mowing, Fertilizing, And Irrigating Turfgrass, Douglas J. Soldat, James T. Brosnan, Ambika Chandra, Roch E. Gaussoin, Alec Kowalewski, Bernd Leinauer, Frank S. Rossi, John C. Stier, J. Bryan Unruh

Department of Agronomy and Horticulture: Faculty Publications

The public health crisis and economic recession caused by the COVID-19 pandemic have forced turfgrass industry professionals to re-evaluate standard practices. Minimum costs required to fertilize, irrigate, and mow turfgrasses can be roughly estimated using climate data, turfgrass physiology information, and resource costs. Although the actual minimum costs vary situationally and regionally, mowing golf putting greens optimally requires about US$34 per acre per month, whereas other turfgrass areas cost less than US$11 per acre per growing month. Fertilizer applications to turfgrass cost US$22 or less per acre per growing month. Irrigation costs (water and electricity for pumping) vary widely, with …

Continuous Cropping Alters Multiple Biotic And Abiotic Indicators Of Soil Health, Pervaiz Ahmad, Javed Iqbal, Qingming Zhang, Dima Chen, Hui Wei, Muhammad Saleem

Department of Agronomy and Horticulture: Faculty Publications

The continuous cropping (CC) of major agricultural, horticultural, and industrial crops is an established practice worldwide, though it has significant soil health-related concerns. However, a combined review of the effects of CC on soil health indicators, in particular omics ones, remains missing. The CC may negatively impact multiple biotic and abiotic indicators of soil health, fertility, and crop yield. It could potentially alter the soil biotic indicators, which include but are not limited to the composition, abundance, diversity, and functioning of soil micro- and macro-organisms, microbial networks, enzyme activities, and soil food web interactions. Moreover, it could also alter various …

Use Of Family Structure Information In Interaction With Environments For Leveraging Genomic Prediction Models, Reyna Persa, Hiroyoshi Iwata, Diego Jarquin

Department of Agronomy and Horticulture: Faculty Publications

The characterization of genomes with great detail offered by the modern genotyping platforms have opened a venue for accurately predicting the genotype-by-environment interaction (GE) effects of untested genotypes in different environmental conditions. Already developed statistical models have shown the advantages of including the GE interaction component in the prediction context using molecular markers, pedigree, or both. In order to leverage the family information of highly structured populations when pedigree data is not available, we developed a model that uses the family membership instead. The proposed model extends the reaction norm model by including the interaction between families and environments (FE). …

Coal Char Affects Soil Ph To Reduce Ammonia Volatilization From Sandy Loam Soil, Dinesh Panday, Maysoon M. Mikha, Bijesh Maharjan

Department of Agronomy and Horticulture: Faculty Publications

Ammonia (NH3) volatilization loss adversely affects N availability in soil-plant systems, reduces crop yield, and negatively impacts environment. Char (coal combus- tion residue), which contains up to 293 g kg−1 total C by weight, has been shown to reduce NH3 volatilization due to its considerably high surface area and cation exchange capacity. The NH3 loss can be greatly affected by a shift in soil pH or urea hydrolysis. A 21-d laboratory study was conducted to evaluate the effects of char on soil pH, N transformations, and subsequent NH3 volatilization in sandy loam soil. Two char rates (0 and 13.4 Mg …

Isoseq Transcriptome Assembly Of C3 Panicoid Grasses Provides Tools To Study Evolutionary Change In The Panicoideae, Daniel S. Carvalho, Aime Nishimwe, James Schnable

Department of Agronomy and Horticulture: Faculty Publications

The number of plant species with genomic and transcriptomic data has been increasing rapidly. The grasses—Poaceae—have been well represented among species with published reference genomes. However, as a result the genomes of wild grasses are less frequently targeted by sequencing efforts. Sequence data from wild relatives of crop species in the grasses can aid the study of domestication, gene discovery for breeding and crop improvement, and improve our understanding of the evolution of C₄ photosynthesis. Here, we used long-read sequencing technology to characterize the transcriptomes of three C₃ panicoid grass species: Dichanthelium oligosanthes, Chasmanthium laxum, and …

The Lateral Root Density Gene Regulates Root Growth During Water Stress In Wheat, Dante F. Placido, Jaspreet Sandhu, Shirley Sato, Natalya Nersesian, Truyen Quach, Thomas Clemente, Paul Staswick, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Drought stress is the major limiting factor in agriculture. Wheat, which is the most widely grown crop in the world, is predominantly cultivated in drought-prone rainfed environments. Since roots play a critical role in water uptake, root response to water limitations is an important component for enhancing wheat adaptation. In an effort to discover novel genetic sources for improving wheat adaptation, we characterized a wheat translocation line with a chromosomal segment from Agropyron elongatum, a wild relative of wheat, which unlike common wheat maintains root growth under limited-water conditions. By exploring the root transcriptome data, we found that reduced …

Adjusting Corn Nitrogen Management By Including A Mineralizable-Nitrogen Test With The Preplant And Presidedress Nitrate Tests, Jason Clark, Fabián G. Fernández, Kristen S. Veum, James J. Camberato, Paul R. Carter, Richard Ferguson, David W. Franzen, Daniel E. Kaiser, Newell R. Kitchen, C. A.M. Laboski, Emerson Nafziger, Carl J. Rosen, John E. Sawyer, John F. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

The anaerobic potentially mineralizable N (PMN) test combined with the preplant (PPNT) and presidedress (PSNT) nitrate tests may improve corn (Zea mays L.) N fertilization predictions. Forty-nine corn N response experiments (mostly corn following soybean [Glycine max (L.) Merr.]) were conducted in the U.S. Midwest from 2014–2016 to evaluate the ability of the PPNT and PSNT to predict corn relative yield (RY) and N fertilizer over- and under-application rates when adjusted by PMN. Before planting and N fertilization, PPNT (0–30, 30–60, and 60–90 cm) and PMN (0–30 cm) samples were obtained. In-season soil samples were obtained at the …

Relating Four-Day Soil Respiration To Corn Nitrogen Fertilizer Needs Across 49 U.S. Midwest Fields, G. M. Bean, Newell R. Kitchen, Kristen S. Veum, James J. Camberato, Richard Ferguson, Fabian G. Fernandez, David W. Franzen, Carrie A.M. Laboski, Emerson Nafziger, John E. Sawyer, Matt Yost

Department of Agronomy and Horticulture: Faculty Publications

Soil microbes drive biological functions thatmediate chemical and physical processes necessary for plants to sustain growth. Laboratory soil respiration has been proposed as one universal soil health indicator representing these functions, potentially informing crop and soil management decisions. Research is needed to test the premise that soil respiration is helpful for profitable in-season nitrogen (N) rate management decisions in corn (Zea mays L.). The objective of this research was two-fold: (i) determine if the amount of N applied at the time of planting effected soil respiration, and (ii) evaluate the relationship of soil respiration to corn yield response to …

Adding A Late Fall Application Of Proxy (Ethephon) Before Two Traditional Spring Applications Improves Seedhead Control Of Annual Bluegrass, Zachary Reicher, Matthew Sousek, Aaron J. Patton, Adam Van Dyke, William C. Kreuser, John C. Inguagiato, Kevin M. Miele, John Brewer, Shawn D. Askew, Aaron Hathaway, Thomas A. Nikolai, Alec Kowalewski, Brian Mcdonald

Department of Agronomy and Horticulture: Faculty Publications

Annual bluegrass (ABG) (Poa annua L.) is a prolific seed producer in the spring on golf courses that in turn decreases aesthetic quality and trueness of ball roll on coolseason putting greens. Proxy (ethephon) applied twice in the spring after green-up is the current industry standard after the loss of Embark (mefluidide) from the turf and ornamental market. However, plant growth regulators including Proxy have been used for years to help suppressABGseedheads with inconsistent success. The primary objective of this study was to determine if ABG seedhead suppression is improved by adding a late fall application of Proxy to …

Allelic Variation In Rice Fertilization Independent Endosperm 1 Contributes To Grain Width Under High Night Temperature Stress, Balpreet K. Dhatt, Puneet Paul, Jaspreet Sandhu, Waseem Hussain, Larissa Irvin, Feiyu Zhu, Maria Arlene Adviento-Borbe, Argelia Lorence, Paul Staswick, Hongfeng Yu, Gota Morota, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

A higher minimum (night-time) temperature is considered a greater limiting factor for reduced rice yield than a similar increase in maximum (daytime) temperature. While the physiological impact of high night temperature (HNT) has been studied, the genetic and molecular basis of HNT stress response remains unexplored.

We examined the phenotypic variation for mature grain size (length and width) in a diverse set of rice accessions under HNT stress. Genome-wide association analysis identified several HNT-specific loci regulating grain size as well as loci that are common for optimal and HNT stress conditions.

A novel locus contributing to grain width under HNT …

Leveraging Genome-Enabled Growth Models To Study Shoot Growth Responses To Water Deficit In Rice, Malachy T. Campbell, Alexandre Grondin, Harkamal Walia, Gota Morota

Department of Agronomy and Horticulture: Faculty Publications

lucidating genotype-by-environment interactions and partitioning its contribution to phenotypic variation remains a challenge for plant scientists. We propose a framework that utilizes genome-wide markers to model genotype-specific shoot growth trajectories as a function of time and soil water availability. A rice diversity panel was phenotyped daily for 21 d using an automated, high-throughput image-based, phenotyping platform that enabled estimation of daily shoot biomass and soil water content. Using these data, we modeled shoot growth as a function of time and soil water content, and were able to determine the time point where an inflection in the growth trajectory occurred. We …

Voxel Carving-Based 3d Reconstruction Of Sorghum Identifies Genetic Determinants Of Light Interception Efficiency, Mathieu Gaillard, Chenyong Miao, James Schnable, Bedrich Benes

Department of Agronomy and Horticulture: Faculty Publications

Changes in canopy architecture traits have been shown to contribute to yield increases. Optimizing both light interception and light interception efficiency of agricultural crop canopies will be essential to meeting the growing food needs. Canopy architecture is inherently three-dimensional (3D), but many approaches to measuring canopy architecture component traits treat the canopy as a two-dimensional (2D) structure to make large scale measurement, selective breeding, and gene identification logistically feasible. We develop a high throughput voxel carving strategy to reconstruct 3D representations of sorghum from a small number of RGB photos. Our approach builds on the voxel carving algorithm to allow …

Genome-Wide Identification And Analysis Of Heterotic Loci In Three Maize Hybrids, Hongjun Liu, Qin Wang, Mengjiao Chen, Yahui Ding, Xuerong Yang, Jie Liu, Xiaohan Li, Congcong Zhou, Qilin Tian, Yiqi Lu, Danlin Fan, Junpeng Shi, Lin Zhang, Congbin Kang, Mingfei Mingfei Sun, Fangyuan Li, Yujian Wu, Yongzhong Zhang, Baoshen Liu, Xiang Yu Zhao, Qi Feng, Jinliang Yang, Bin Han, Jinsheng Lai, Xian Sheng Zhang, Xuehui Huang

Department of Agronomy and Horticulture: Faculty Publications

Heterosis, or hybrid vigour, is a predominant phenomenon in plant genetics, serving as the basis of crop hybrid breeding, but the causative loci and genes underlying heterosis remain unclear in many crops. Here, we present a large-scale genetic analysis using 5360 offsprings from three elite maize hybrids, which identifies 628 loci underlying 19 yield-related traits with relatively high mapping resolutions. Heterotic pattern investigations of the 628 loci show that numerous loci, mostly with complete–incomplete dominance (the major one) or overdominance effects (the secondary one) for heterozygous genotypes and nearly equal proportion of advantageous alleles from both parental lines, are the …

Vegetation Detection Using Deep Learning And Conventional Methods, Bulent Ayhan, Chiman Kwan, Bence Budavari, Liyun Kwan, Yan Lu, Daniel Perez, Jiang Li, Dimitrios Skarlatos, Marinos Vlachos

Electrical & Computer Engineering Faculty Publications

Land cover classification with the focus on chlorophyll-rich vegetation detection plays an important role in urban growth monitoring and planning, autonomous navigation, drone mapping, biodiversity conservation, etc. Conventional approaches usually apply the normalized difference vegetation index (NDVI) for vegetation detection. In this paper, we investigate the performance of deep learning and conventional methods for vegetation detection. Two deep learning methods, DeepLabV3+ and our customized convolutional neural network (CNN) were evaluated with respect to their detection performance when training and testing datasets originated from different geographical sites with different image resolutions. A novel object-based vegetation detection approach, which utilizes NDVI, computer …