Botany Commons^™

Evolutionary Origins Of Secondary Growth - The Periderm Perspective: Integrating Evidence From Fossils And Living Plants, Madison A.K. Lalica

Cal Poly Humboldt theses and projects

Periderm is a structural feature with roles in protection of inner plant tissues and wound healing. Knowledge of periderm occurrences in the fossil record and living lineages outside the seed plants is limited and its evolutionary origins remain poorly explored. Here, I review the known taxonomic distribution of canonical periderm (typical ontogenetic stage) and wound periderm (self-repair mechanism). To this sparse body of data I add new observations and experiments on living plant lineages and new occurrences from the fossil record. One of the latter, documented in the new early euphyllophyte species Nebuloxyla mikmaqiana, joins the oldest known periderm …

Morphological Trait Evolution In Solanum (Solanaceae): Evolutionary Lability Of Key Taxonomic Characters, Rebecca Hilgenhof, Edeline Gagnon, Sandra Knapp, Xavier Aubriot, Eric Tepe, Lynn Bohs, Leandro Giacomin, Yuri Gouvea, Andres Orejuela, Christopher T. Martine, Clara Ines Orozco, Iris E. Peralta, Tina Sarkinen

Faculty Journal Articles

Solanum is one of the world's largest and economically most important plant genera, including 1245 currently accepted species and several major and minor crops (e.g., tomato, potato, brinjal eggplant, scarlet eggplant, Gboma eggplant, lulo, and pepino). Here we provide an overview of the evolution of 25 key morphological traits for the major and minor clades of this giant genus based on stochastic mapping using a well-sampled recently published phylogeny of Solanum. The most evolutionarily labile traits (showing >100 transitions across the genus) relate to plant structure (growth form and sympodial unit structure), herbivore defence (glandular trichomes), pollination (corolla shape …

Phylogenomic Discordance Suggests Polytomies Along The Backbone Of The Large Genus Solanum, Edeline Gagnon, Rebeccca Hilgenhof, Andrés Orejuela, Angela J. Mcdonnell, Gaurav Sablok, Xavier Aubriot, Leandro Giacomin, Yuri Gouvêa, Thamyris Bragionis, João Renato Stehmann, Lynn Bohs, Steven Dodsworth, Christopher T. Martine, Péter Poczai, Sandra Knapp, Tiina Särkinen

Faculty Journal Articles

Premise of the study

Evolutionary studies require solid phylogenetic frameworks, but increased volumes of phylogenomic data have revealed incongruent topologies among gene trees in many organisms both between and within genomes. Some of these incongruences indicate polytomies that may remain impossible to resolve. Here we investigate the degree of gene-tree discordance in Solanum, one of the largest flowering plant genera that includes the cultivated potato, tomato, and eggplant, as well as 24 minor crop plants.

Methods

A densely sampled species-level phylogeny of Solanum is built using unpublished and publicly available Sanger sequences comprising 60% of all accepted species (742 spp.) …

Drought Tolerance In Native And Invasive Populations Of The Centaurea Jacea Hybrid Complex, Zoe Portlas

Graduate College Dissertations and Theses

Introduced plants face many ecological and evolutionary challenges when establishing in a new range, such as strong abiotic stressors and potentially novel selective environments. One such abiotic stress is water availability, which is a strong selective force shaping physiological and phenological traits that enable plants to tolerate or avoid drought stress. Despite the challenges of establishing in a new range, thousands of species have become invasive in recent centuries. Two hypotheses that may explain how a species is able to withstand stress in its introduced range are preadaptation, which posits that species are adapted to similar environments in their native …

Evolution And Development Of Staminodes In Paronychia (Caryophyllaceae), Andrea D. Appleton

Honors College Theses

Staminodes are infertile stamens that have evolved numerous times in flowering plants and exhibit a vast array of forms and functions. Variation in staminodes suggests that numerous evolutionary processes underlie their origins, but to understand their how and why they evolved, comparative studies are needed in groups of closely related species. Identifying structures as staminodes is not always straightforward and sometimes requires corroborating phylogenetic and developmental evidence. Staminodial structures in Paronychia (Caryophyllaceae), for example, vary in shape and size and have been referred to as both petals and staminodes, rendering their homology uncertain. The development of staminodes was compared across …

Climate Niche Evolution In C4+Cam Portulaca And Closely Related C3+Cam Lineages, Nora M. Heaphy

Library Map Prize

With at least a hundred independent origins among land plants, the CAM and C4 photosynthetic pathways represent one of the most notable examples of global convergent evolution of a complex trait. While biochemically similar, CAM and C4 are generally understood to be two distinct ecological adaptations evolving along separate trajectories. However, the purslanes (Portulaca), a globally widespread clade of around 100 species of annual and perennial succulents, are able to operate both CAM and C4 cycles in the same leaf. Portulaca likely originated from a facultative CAM ancestor and then evolved a C4 system at least three times …

Phylogenetic Relationships Among Mexican Species Of The Genus Sechium (Cucurbitaceae), Luis Ángel Barrera Guzmán, Juan Porfirio Legaria Solano, Jorge Cadena Iñiguez, Jaime Sahagún Castellanos

Turkish Journal of Botany

The genus Sechium includes 11 species, which are highly related to the genus Sicyos. Sechium is native to Mesoamerica, but only S. edule and S. tacaco have been domesticated. Sechium edule is the most exploited species of the genus due to its broad phenotypic variability. A total of 68 samples from the species S. chinantlense, S. compositum, S.hintonii and S.edule were evaluated, as well as their respective varietal complexes (albus, nigrum and virens groups), thereby amplifying the loci of mitochondrial DNA (CoxIII), chloroplast DNA (rbcL) and the nuclear ribosomal ITS1-5.8S-ITS2 region. This was done with the aim of establishing phylogenetic …

Evolutionary Genomics Of Dynamic Sex Chromosomes In The Salicaceae, Ran Zhou

Graduate Theses, Dissertations, and Problem Reports

Identifying the sex-determination region (SDR) and other genomic features of sex chromosomes are of great importance in the studies of the evolution of sex. However, the process of accurately identifying the size and location of the SDR is often difficult, even when a genomic sequence is available. This usually is hindered by large repetitive elements and a lack of recombination in the SDR. In this thesis, I assemble sex chromosomes with whole genomic sequencing data, identify SDRs and explore their genomic features in two sister species from the Salicaceae family. I also develop an interpretation of the lability of the …

A Generic Classification Of The Thelypteridaceae, Susan E. Fawcett

Graduate College Dissertations and Theses

The Thelypteridaceae is among the largest fern families, with over 1000 species, and comprises about 10% of all fern diversity. The family is cosmopolitan and most diverse near the equator, although species range as far north as Greenland and Alaska, and as far south as southern New Zealand. The generic classification of the Thelypteridaceae has been the subject of much controversy among authors. Proposed taxonomic systems have varied from recognizing more than 1000 species in the family within a single genus, Thelypteris, to systems favoring upwards of 30 genera. Insights on intrafamilial relationships have been gained from recent phylogenetic studies, …

Evolutionary Genetics Of The Genus Zamia (Zamiaceae, Cycadales), Michael Calonje

FIU Electronic Theses and Dissertations

The genus Zamia L. (Zamiaceae), consisting of 77 species, is the most species-rich and widely distributed cycad genus in the New World and is arguably the most morphologically and ecologically diverse genus in the Cycadales. We utilized a multilocus sequence dataset of 10 independent loci (9 single copy nuclear genes + 1 plastid) and extensive taxon sampling (over 90% of species) to infer phylogenetic relationships within Zamia. We infer a robust phylogenetic tree for the genus with a strong geographic delimitation of clades and find that four morphological characters typically used for diagnostic purposes in the genus exhibit a high …

Natural And Anthropogenic Drivers Of Tree Evolutionary Dynamics, Brandon M. Lind

Theses and Dissertations

Species of trees inhabit diverse and heterogeneous environments, and often play important ecological roles in such communities. As a result of their vast ecological breadth, trees have become adapted to various environmental pressures. In this dissertation I examine various environmental factors that drive evolutionary dynamics in threePinusspecies in California and Nevada, USA. In chapter two, I assess the role of management influence of thinning, fire, and their interaction on fine-scale gene flow within fire-suppressed populations of Pinus lambertiana, a historically dominant and ecologically important member of mixed-conifer forests of the Sierra Nevada, California. Here, I find evidence …

Synthesis And Future Directions: What Have Harsh Environments Taught Us About Ecology, Evolution, Conservation, And Restoration?, Nishanta Rajakaruna, Robert S. Boyd, Tanner B. Harris

Nishanta Rajakaruna

No abstract provided.

Synthesis And Future Directions: What Have Harsh Environments Taught Us About Ecology, Evolution, Conservation And Restoration, Nishanta Rajakaruna, R. S. Boyd, T. B. Harris

Faculty Publications, Biological Sciences

No abstract provided.

Phylogeny, Geographic Distribution, And New Taxonomic Circumscription Of The Crocus Reticulatus Species Group (Iridaceae), Dörte Harpke, Lorenzo Peruzzi, Helmut Kerndorff, Theophanis Karamplianis, Theophanis Constantinidis, Vladimir Randelovic, Novica Randelovic, Marina Juskovic, Erich Pasche, Frank R. Blattner

Turkish Journal of Botany

Recent phylogenetic analyses proved several infrageneric units within the genus Crocus to be para- or polyphyletic. In an attempt to arrive at a system of Crocus that closely reflects species relationships, we provide here phylogenetic, morphometric, geographic, and nomenclatorial data for the species of a narrower-defined, monophyletic Crocus series Reticulati. We sequenced the ETS and ITS regions of the nuclear ribosomal DNA in 9 Reticulati and 19 outgroup species. Three chloroplast loci (trnL-F, rps16-trnQ, matK-trnK) were sequenced in the newly defined series Reticulati species and 1 outgroup. Data were analyzed with Bayesian and parsimony algorithms. The phylogenies resulted in 2 …

Extreme Environments Select For Reproductive Assurance: Evidence From Evening Primroses (Oenothera), Margaret Evans, David Hearn, Kathryn Theiss, Karen Cranston, Kent Holsinger, Michael Donoghue

Kent E Holsinger

• Competing evolutionary forces shape plant breeding systems (e.g. inbreeding depression, reproductive assurance). Which of these forces prevails in a given population or species is predicted to depend upon such factors as life history, eco- logical conditions, and geographical context. Here, we examined two such predictions: that self-compatibility should be associated with the annual life history or extreme climatic conditions.

• We analyzed data from a clade of plants remarkable for variation in breeding system, life history and climatic conditions (Oenothera, sections Anogra and Kleinia, Onagraceae). We used a phylogenetic comparative approach and Bayesian or hybrid Bayesian tests to account …

Wood Anatomy Of Family Salvadoraceae From The Indian Subcontinent With Special Reference To The Ultrastructure Of The Vessel Wall, Vishakha Saxena, Sangeeta Gupta

Aliso: A Journal of Systematic and Floristic Botany

The present study describes the wood microstructure of Azima tetracantha, Salvadora oleoides, and S. persica, the members of family Salvadoraceae represented in the Indian Subcontinent. An identification key based on wood anatomical features has been developed for the separation of the species. SEM studies revealed the presence of vesturing in intervessel pits of Salvadora.

Extreme Environments Select For Reproductive Assurance: Evidence From Evening Primroses (Oenothera), Margaret E.K. Evans, David J. Hearn, Kathryn E. Theiss, Karen Cranston, Kent E. Holsinger, Michael J. Donoghue

EEB Articles

• Competing evolutionary forces shape plant breeding systems (e.g. inbreeding depression, reproductive assurance). Which of these forces prevails in a given population or species is predicted to depend upon such factors as life history, eco- logical conditions, and geographical context. Here, we examined two such predictions: that self-compatibility should be associated with the annual life history or extreme climatic conditions.

• We analyzed data from a clade of plants remarkable for variation in breeding system, life history and climatic conditions (Oenothera, sections Anogra and Kleinia, Onagraceae). We used a phylogenetic comparative approach and Bayesian or hybrid Bayesian tests to account …

Descriptive Anatomy And Evolutionary Patterns Of Anatomical Diversification In Adenia (Passifloraceae), David J. Hearn

Aliso: A Journal of Systematic and Floristic Botany

To understand evolutionary patterns and processes that account for anatomical diversity in relation to ecology and life form diversity, anatomy of storage roots and stems of the genus Adenia (Passifloraceae) were analyzed using an explicit phylogenetic context. Over 65,000 measurements are reported for 47 quantitative and qualitative traits from 58 species in the genus. Vestiges of lianous ancestry were apparent throughout the group, as treelets and lianous taxa alike share relatively short, often wide, vessel elements with simple, transverse perforation plates, and alternate lateral wall pitting; fibriform vessel elements, tracheids associated with vessels, and libriform fibers as additional tracheary elements; …

Dicliny In Bouteloua (Poaceae: Chloridoideae): Implications For The Evolution Of Dioecy, Michael S. Kinney, J. Travis Columbus, Elizabeth A. Friar

Aliso: A Journal of Systematic and Floristic Botany

The New World grass genus Bouteloua (Chloridoideae: Cynodonteae) comprises 57 species, 13 of which produce unisexual spikelets and hence are diclinous. Andromonoecy, gynodioecy, monoecy, trimonoecy, and dioecy all occur in the genus, and ten species are known to express more than one of these breeding systems. Employing a phylogenetic estimate based on parsimony analysis of DNA sequences from the ITS (nrDNA) and trnL–F (cpDNA) regions representing 35 species of Bouteloua, including ten of 13 diclinous species, we used parsimony character state reconstructions to investigate the evolution of unisexual spikelets and breeding systems. Our specific goals were to estimate …

A Comparison And Combination Of Plastid Atpb And Rbcl Gene Sequences For Inferring Phylogenetic Relationships Within Orchidaceae, Kenneth M. Cameron

Aliso: A Journal of Systematic and Floristic Botany

Parsimony analyses of DNA sequences from the plastid genes atpB and rbcL were completed for 173 species of Orchidaceae (representing 150 different genera) and nine genera from outgroup families in Asparagales. The atpB tree topology is similar to the rbcL tree, although the atpB data contain less homoplasy and provide greater jackknife support than rbcL alone. In combination, the two-gene tree recovers five monophyletic clades corresponding to subfamilies within Orchidaceae, and fully resolves them with moderate to high jackknife support as follows: Epidendroideae are sister to Orchidoideae, followed by Cypripedioideae, then Vanilloideae, and with …

A Nuclear Rdna Phylogeny Of Smilax (Smilacaceae), Kenneth M. Cameron, Chengxin Fu

Aliso: A Journal of Systematic and Floristic Botany

Smilacaceae are a taxonomically confused, cosmopolitan family of Liliales characterized by climbing habit, reticulate leaf venation, paired petiolar tendrils, unisexual flowers, and superior ovaries. Deviations from this generalized morphology have led to the division of Smilacaceae into at least seven different genera and five sections within the large genus Smilax. In particular, taxa with connate tepals (Heterosmilax), more than six stamens (Pleiosmilax, Oligosmilax), or herbaceous habit (Hemexia) have been variously classified. Using DNA sequences of 96 taxa from the nuclear rDNA ITS gene region, parsimony analyses provide moderate resolution, but generally poor bootstrap support …

Phylogeny And New Intrageneric Classification Of Allium (Alliaceae) Based On Nuclear Ribosomal Dna Its Sequences, Nikolai Friesen, Reinhard M. Fritsch, Frank R. Blattner

Aliso: A Journal of Systematic and Floristic Botany

The internal transcribed spacer region (ITS) of nuclear ribosomal DNA was sequenced from 195 representative species of Allium, two species of Nothoscordum, and one species each of lpheion, Dichelostemma, and Tulbaghia. Within the Allium species the lengths of the ITS regions were in a range from 612 to 661 base pairs and pairwise genetic distances reached up to 46%. The ITS data supported the inclusion of Nectaroscordum, Caloscordum, and Milula into Allium. Subgenera Rhizirideum and Allium, as well as sects. Reticulatobulbosa and Oreiprason were non-monophyletic taxa. Based on the phylogenetic relations, a new classification of genus Allium consisting of 15 …

The Role Of Phylogenetic Constraints In The Evolution Of Pollination Mechanisms In Iridaceae Of Sub-Saharan Africa, Peter Bernhardt, Peter Goldblatt

Aliso: A Journal of Systematic and Floristic Botany

Novel, specialized systems exploiting bibionid flies, oil-collecting bees, wasps, or crepuscular settling moths as pollen vectors are added to the range of recorded pollination mechanisms in sub-Saharan Africa Iridaceae, while knowledge of the pollination of previously understudied genera such as Aristea, Bahiana, Ferraria, Hesperantha, and Tritoniopsis is expanded. The pollination of 357 species of the sub-Saharan African Iridaceae now includes 17 discrete systems. Based on repetitive interlinked suites of floral attractants and rewards we now infer pollination mechanisms for an additional 883 species. Many pollination systems recur in genera containing > 10 species. The ancestral pollination in African Iridaceae, and …

A Coalescent Approach To Chloroplast Genome Relationships Within And Between Populations Of Pinus Devoniana In Mexico, Jennifer A. Matos

Aliso: A Journal of Systematic and Floristic Botany

Pinus devoniana, a member of the Pinus montezumae complex (Ponderosae) of Mexico and Central America occurs as scattered populations from the western states of Jalisco and Nayarit to Chiapas in the east. Populations within regions, i.e., western or eastern Mexico, are separated by from 75 to 300 km, while the eastern and western populations are more that 700 km apart. Levels of gene flow between populations within regions and between eastern and western Mexico are assessed using the paternally inherited chloroplast genome as a marker. Twenty-five polymorphic restriction chloroplast sites were found in the 175 individuals surveyed; …

The Linnaean Hierarchy And The Evolutionization Of Taxonomy, With Emphasis On The Problem Of Nomenclature, Kevin De Queiroz

Aliso: A Journal of Systematic and Floristic Botany

During the post-Darwinian history of taxonomy, the Linnaean hierarchy has maintained its role as a means for representing hierarchical taxonomic relationships. During the same period, the principle of descent has taken on an increasingly important role as the basis for reformulated versions of fundamental taxonomic concepts and principles. Early in this history, the principle of descent provided an explanation for the existence of taxa and implied a nested, hierarchical structure for taxonomic relationships. Although an evolutionary explanation for taxa contradicted the Aristotelian context within which the Linnaean hierarchy was developed, the nested, hierarchical structure of taxonomic rela· tionships implied by …

Does The Monocot Mode Of Leaf Development Characterize All Monocots?, Geeta Bharathan

Aliso: A Journal of Systematic and Floristic Botany

Patterns of early leaf development in monocots are analyzed in a phylogenetic context. Recent developmental and phylogenetic studies enable this reevaluation of the leaf base model of the developing monocot leaf. Two questions are addressed: a) is the presence of the Vorläuferspitze (fore-runner tip) invariably correlated with development of the lamina from the lower leaf zone? and b) was the ancestral monocot characterized by the leaf base mode of development? Scanning electron microscopic observations are made of young primorida using the mold and cast method. These data are combined with data from the literature and examined in a phylogenetic context …

Integrating Cellular And Molecular Approchaes Into Studies Of Development And Evolution: The Issue Of Morphological Homology, Andrés Collazo, Scott E. Fraser

Aliso: A Journal of Systematic and Floristic Botany

Understanding the development and evolution of complex morphological characters requires broad, multidisciplinary approaches. By combining biological imaging, phylogenetic analyses, embryological manipulations and additional modem molecular techniques (e.g., whole mount in situ hybridization), we can address fundamental questions, such as the determination of homology. Many of the novel structures that evolved in vertebrates and distinguish them from their ancestors (such as jaws and the mechanosensory lateral line) are derived embryonically from two migratory ectodermal tissues, neural crest and/or various epidermal placodes. In particular, time-lapse cinematography of fluorescently labeled cells in living Xenopus and fish embryos has proved a powerful technique, revealing …

Distribution And Evolution Of Forms And Types Of Sieve-Element Plastids In The Dicotyledons, Dietmar Behnke

Aliso: A Journal of Systematic and Floristic Botany

Sieve-element plastids may contain any combination of protein crystals (c), protein filaments (f), and starch grains (s), or none of these. All structurally distinct combinations (=forms) possible (s, cs, cfs, c, cf, fs, f, o) are recorded among the 2100 dicotyledons investigated so far with the transmission electron microscope (representing 381 of more than 460 families described). The six forms that include c and/or f define the P-type and are found in some 620 species, mainly confined to Magnolianae, Caryophyllanae, Vitanae, and Rutanae (Fabales, Linales, Rhizophorales). A detailed family-by-family analysis and quantitative form-by-form comparison suggests that form-Ss plastids give rise …

Steps Toward A Natural System Of The Dicotyledons, Gertrud Dahlgren

Aliso: A Journal of Systematic and Floristic Botany

Embryological character states are mapped on the diagrams of dicotyledons (G. Dahlgren 1989). The often well-defined pattern of distribution forms a basis for discussing and clarifying phylogenetic relations. It is shown how numerous embryological characters, alone or in combinations, support certain systematic constellations, even if the character states may have arisen independently within a varying number of evolutionary lines. Characters presented are: anther wall formation; tapetum types; cells in pollen grains at dispersal; microsporogenesis; ovule morphology; ovule integuments; endothelium; obturator; parietal tissue; embryo sac formation; antipodal cells; hypostase, embryogeny; polyembryony; endosperm formation; persistence of endosperm; ruminate endosperm; endosperm haustoria; perisperm; …

Chromosome Numbers And Evolution In Anoda And Periptera (Malvaceae), David M. Bates

Aliso: A Journal of Systematic and Floristic Botany

Relationships within and between the principally North American, malvaceous genera Anoda and Periptera are assessed through analysis of chromosomal and hybridization data. Chromosome numbers are reported for ten species of Anoda and one of Periptera, and observations on meiosis in hybrid and non hybrid plants are presented. The results indicate: I) that Anoda and Periptera are closely related and occupy a relatively isolated position in the tribe Malveae, 2) that speciation in Anoda has occurred primarily at the diploid level, n = 15 , although A. crenatiflora is tetraploid and A. cristata includes diploids, tetraploids, and hexapJoids, and 3) that …