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2023

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Articles 91 - 120 of 270

Full-Text Articles in Botany

Tillage, Green Manuring And Crop Residue Management Impacts On Crop Productivity, Potassium Use Efficiency And Potassium Fractions Under Rice-Wheat System, Sandeep Sharma, Pritpal Singh, Hayssam M. Ali, Manzer Hussain Siddiqui, Javed Iqbal Jun 2023

Tillage, Green Manuring And Crop Residue Management Impacts On Crop Productivity, Potassium Use Efficiency And Potassium Fractions Under Rice-Wheat System, Sandeep Sharma, Pritpal Singh, Hayssam M. Ali, Manzer Hussain Siddiqui, Javed Iqbal

Department of Agronomy and Horticulture: Faculty Publications

The conventional crop production practices including intensive tillage and open field crop residue burning in world’ largest rice-wheat system (RWS) are adversely affecting crop productivity besides deteriorating natural resources and ecosystems’ sustainability. In order to improve system productivity, potassium (K) use efficiency and apparent K balance, adoption of conservation tillage in a RWS with residue management is considered highly effective. We therefore, studied the effect of wheat straw retention and green manure (GM) in rice (main plot treatment), and tillage and rice residue management in subsequent wheat (sub-plot treatments) on crop productivity, K use efficiency and its transformation amongst different …


First Things First: Widespread Nutrient Deficiencies Limit Yields In Smallholder Oil Palm Fields, Hendra Sugianto, Juan Pablo Monzon, Iput Pradiko, Fatima A. Tenorio, Ya Li Lim, Christopher R. Donough, Sunawan, Suroso Rahutomo, Fahmuddin Agus, James Cock, Joni Amsar, Rana Farrasati, Ridho Iskandar, Juan I. Rattalino Edreira, Shofia Saleh, Heri Santoso, Antonius P. Tito, Nadib Ulfaria, Maja A. Slingerland, Patricio Grassini Jun 2023

First Things First: Widespread Nutrient Deficiencies Limit Yields In Smallholder Oil Palm Fields, Hendra Sugianto, Juan Pablo Monzon, Iput Pradiko, Fatima A. Tenorio, Ya Li Lim, Christopher R. Donough, Sunawan, Suroso Rahutomo, Fahmuddin Agus, James Cock, Joni Amsar, Rana Farrasati, Ridho Iskandar, Juan I. Rattalino Edreira, Shofia Saleh, Heri Santoso, Antonius P. Tito, Nadib Ulfaria, Maja A. Slingerland, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

CONTEXT: Indonesia is the most important oil palm producing country. Nearly 40% of planted area is managed by smallholders, with yields well below the potential. Efforts to increase productivity have focused on the source of planting material, with little attention paid to plant nutrition.

OBJECTIVE: To assess the degree to which current productivity in smallholder oil palm fields is limited by nutrients in scenarios with distinct sources of planting material.

METHODS: We collected detailed data on leaf nutrient concentration from 30 fields to derive minimum sampling size needed to diagnose nutrient status. Subsequently, we collected data on …


Nutrients Ions Indices Of Some Medicinal Flora Of Cholistan Desert Of Pakistan, Ghulam Yasin, Adeela Altaf, Ikram Ul Haq, Samra Nazeer, Mubasharah Sabir Jun 2023

Nutrients Ions Indices Of Some Medicinal Flora Of Cholistan Desert Of Pakistan, Ghulam Yasin, Adeela Altaf, Ikram Ul Haq, Samra Nazeer, Mubasharah Sabir

Makara Journal of Science

By knowing the nutritional status of a plant, one can better manage and use it for ethnobotanical purposes. Various nutrients are accumulated as osmotica in plants of stressful environments. The type and quantity of nutrients present in plants also determine the effectivity of medicine obtained from that plant. Hence, practical utilization of these plants as food or medicines needs to explore the exact nature and presence of the nutrient ions for discrimination of their toxic or medicinal nature. In the present study, some important nutrients in a number of xerophytic plants from Cholistan desert of Pakistan were quantified. Leave, stem …


Rhaphiolepis Indica Fruit Extracts For Control Fusarium Solani And Rhizoctonia Solani, The Causal Agents Of Bean Root Rot, Ahmed A. Heflish, Said I. Behiry, Abdulaziz A. Al-Askar, Yiming Su, Ahmed Abdelkhalek, Mohamed K. Gaber Jun 2023

Rhaphiolepis Indica Fruit Extracts For Control Fusarium Solani And Rhizoctonia Solani, The Causal Agents Of Bean Root Rot, Ahmed A. Heflish, Said I. Behiry, Abdulaziz A. Al-Askar, Yiming Su, Ahmed Abdelkhalek, Mohamed K. Gaber

Civil and Environmental Engineering Faculty Publications

Numerous strategies have been suggested to reduce dependence on synthetic products, such as physical, microbial, and natural methods. Among the natural remedies, plant extracts have emerged as a popular option owing to their eco-friendly character, ease of degradation, and harmless nature to humans. In our study, we used the acetone and hexane extracts of Rhaphiolepis indica fruit to combat two fungal pathogens that were isolated from infected bean plants and showed root rot symptoms. The two pathogens were confirmed to be pathogenic by pathogenicity assays conducted in vivo. The morphological and molecular identification by ITS-region sequencing revealed that the two …


Cover Crops And Soil Health In Rainfed And Irrigated Corn: What Did We Learn After 8 Years?, Humberto Blanco-Canqui, Sabrina J. Ruis, Katja Koehler-Cole, Roger Elmore, Charles A. Francis Jun 2023

Cover Crops And Soil Health In Rainfed And Irrigated Corn: What Did We Learn After 8 Years?, Humberto Blanco-Canqui, Sabrina J. Ruis, Katja Koehler-Cole, Roger Elmore, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

Duration of cover crop (CC) management, CC biomass production, and other factors could impact how CC affects soil health. We studied the 8-year cumulative impacts of winter rye (Secale cereale L.) CC on soil physical, chemical, and biological properties in rainfed and irrigated no-till corn (Zea mays L.)-based systems in the western US Corn Belt. Average annual CC biomass production was 0.56 ± 0.51 Mg ha−1 at the rainfed site and 0.98 ± 0.95 Mg ha−1 at the irrigated site. After 8 years, CC improved particulate organic matter (POM) and mean weight diameter of waterstable aggregates …


Acarosporaceae Of New Mexico: Eight New Species Of Acarospora And Sarcogyne, Kerry Knudsen, Jana Kocourková, Eva Hodková, Jiří Malíček, Yan Wang Jun 2023

Acarosporaceae Of New Mexico: Eight New Species Of Acarospora And Sarcogyne, Kerry Knudsen, Jana Kocourková, Eva Hodková, Jiří Malíček, Yan Wang

Western North American Naturalist

Eight new species are described from the Chihuahuan Desert in southern New Mexico: Acarospora agos­tiniana, A. divisa, A. fissurata, A. ryanii, Sarcogyne brouardiana, S. coeruleonigricans, S. malpaiensis, and S. nogalensis. Three species, Acarospora coloradiana, A. peltastica, and A. utahensis are not treated as synonyms of A. strigata, a South American endemic. Thirty-four species of Acarosporaceae are reported from the Chihuahuan Desert in southern New Mexico. Fifty-six species of Acarosporaceae are reported from New Mexico. It is estimated that 416 species of described Acarosporales occur worldwide, most in need of revisions. …


Editorial: New Insights Into Mechanisms Of Epigenetic Modifiers In Plant Growth And Development, Volume Ii, Ming Luo, Tomasz Jacek Sarnowski, Marc Libault, Gabino Ríos, Jean-Benoit Charron, Nitin Mantri, Shoudong Zhang Jun 2023

Editorial: New Insights Into Mechanisms Of Epigenetic Modifiers In Plant Growth And Development, Volume Ii, Ming Luo, Tomasz Jacek Sarnowski, Marc Libault, Gabino Ríos, Jean-Benoit Charron, Nitin Mantri, Shoudong Zhang

Department of Agronomy and Horticulture: Faculty Publications

As we have learned, chromatin modifications, including histone modifications and DNA methylation, play a key role in plant development (Ng and Bird, 1999). However, accumulated evidence shows that, besides chromatin biochemical modifications, other epigenetic regulations such as chromatin architecture also function at a pivot point to regulate plant development (Zhang et al., 2021). In this Research Topic, five research papers describe multiple developmental facets mediated by different epigenetic mechanisms besides histone modifications. These manuscripts report experimental evidence or summarize recent advances in epigenetic regulations of some important developmental genes or development-related mechanisms. This Research Topic allows readers to learn of …


A Complete Telomere-To-Telomere Assembly Of The Maize Genome, Jian Chen, Zijian Wang, Kaiwen Tan, Wei Huang, Junpeng Shi, Tong Li, Jiang Hu, Kai Wang, Chao Wang, Beibei Xin, Haiming Zhao, Weibin Song, Matthew B. Hufford, James C. Schnable, Weiwei Jin, China Agricultural University, Hainan Yazhou Bay Seed Laboratory Jun 2023

A Complete Telomere-To-Telomere Assembly Of The Maize Genome, Jian Chen, Zijian Wang, Kaiwen Tan, Wei Huang, Junpeng Shi, Tong Li, Jiang Hu, Kai Wang, Chao Wang, Beibei Xin, Haiming Zhao, Weibin Song, Matthew B. Hufford, James C. Schnable, Weiwei Jin, China Agricultural University, Hainan Yazhou Bay Seed Laboratory

Department of Agronomy and Horticulture: Faculty Publications

A complete telomere-to-telomere (T2T) finished genome has been the long pursuit of genomic research. Through generating deep coverage ultralong Oxford Nanopore Technology (ONT) and PacBio HiFi reads, we report here a complete genome assembly of maize with each chromosome entirely traversed in a single contig. The 2,178.6 Mb T2T Mo17 genome with a base accuracy of over 99.99% unveiled the structural features of all repetitive regions of the genome. There were several super-long simple-sequence-repeat arrays having consecutive thymine–adenine– guanine (TAG) tri-nucleotide repeats up to 235 kb. The assembly of the entire nucleolar organizer region of the 26.8 Mb array with …


Genome-Wide Association Analysis For Emergence Of Deeply Sown Rice (Oryza Sativa) Reveals Novel Aus-Specific Phytohormone Candidate Genes For Adaptation To Dry-Direct Seeding In The Field, Sandeep A. Sakhale, Shailesh Yadav, Lindsay V. Clark, Alexander E. Lipka, Arvind Kumar, Erik J. Sacks Jun 2023

Genome-Wide Association Analysis For Emergence Of Deeply Sown Rice (Oryza Sativa) Reveals Novel Aus-Specific Phytohormone Candidate Genes For Adaptation To Dry-Direct Seeding In The Field, Sandeep A. Sakhale, Shailesh Yadav, Lindsay V. Clark, Alexander E. Lipka, Arvind Kumar, Erik J. Sacks

Department of Agronomy and Horticulture: Faculty Publications

Dry direct-seeded rice (dry-DSR) is typically sown deeply to circumvent the need for irrigation, and thus seedling emergence is a crucial trait affecting plant stand and yield. To breed elite cultivars that use less water and are climate-resilient, an understanding of the genomic regions and underlying genes that confer emergence in deeply sown dry-DSR would be highly advantageous. A combined diversity panel of 470 rice accessions (RDP1 plus aus subset of 3K RGP) was evaluated with 2.9 million single nucleotide polymorphisms (SNPs) to identify associations with dry-DSR traits in the field and component traits in a controlled-environment experiment. Using genome-wide …


Updating The Dual C And O Isotope—Gas-Exchange Model: A Concept To Understand Plant Responses To The Environment And Its Implications For Tree Rings, Rolf T. W. Siegwolf, Marco M. Lehmann, Gregory R. Goldsmith, Olga V. Churakova (Sidorova), Cathleen Mirande-Ney, Galina Timoveeva, Rosmarie B. Weigt, Matthias Saurer Jun 2023

Updating The Dual C And O Isotope—Gas-Exchange Model: A Concept To Understand Plant Responses To The Environment And Its Implications For Tree Rings, Rolf T. W. Siegwolf, Marco M. Lehmann, Gregory R. Goldsmith, Olga V. Churakova (Sidorova), Cathleen Mirande-Ney, Galina Timoveeva, Rosmarie B. Weigt, Matthias Saurer

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The combined study of carbon (C) and oxygen (O) isotopes in plant organic matter has emerged as a powerful tool for understanding plant functional responses to environmental change. The approach relies on established relationships between leaf gas exchange and isotopic fractionation to derive a series of model scenarios that can be used to infer changes in photosynthetic assimilation and stomatal conductance driven by changes in environmental parameters (CO2, water availability, air humidity, temperature, nutrients). We review the mechanistic basis for a conceptual model, in light of recently published research, and discuss where isotopic observations do not match our …


Nature As Material, Time As Tool, Chuchu Chen Jun 2023

Nature As Material, Time As Tool, Chuchu Chen

Masters Theses

No building stands forever. Over time, the natural environment acts upon the outer surface of the building, leading to the failure of materials and the final dissolution of the structure itself, leading to ruin. In order to prevent this or retard its occurrence, we constantly maintain and renew the things we build. Nature seems to stand in opposition to architecture. The passage of time is constantly subtracting from the building. However, what differentiates nature from architecture? This thesis questions whether these two are not opposed, but on a continuous spectrum. Approaching the building as part of the overall environment that …


Impact Of Nitrogen Availability On The Accumulation Of Vegetative Lipids In Sorghum, Leticia Felicio Pasqualino Jun 2023

Impact Of Nitrogen Availability On The Accumulation Of Vegetative Lipids In Sorghum, Leticia Felicio Pasqualino

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Sorghum (Sorghum bicolor (L.) Moench) is a versatile and prosperous feedstock crop for renewable energy production. With the increase in bioenergy demand, the production of higher oil content per biomass in a feedstock crop is a highly desirable trait for the biofuel conversion process yield. Especially if this outcome can be achieved using fewer inputs in the field, such as nitrogen. In microalgae species, nitrogen limitation has been associated with changes in the carbon storage metabolic pathway favoring triacylglycerol (TAG) accumulation. In this context, this study aimed to assess whether nitrogen starvation would result in a similar outcome in …


Arkansas Soybean Performance Tests 2022, J. F. Carlin, R. B. Mulloy, R. D. Bond Jun 2023

Arkansas Soybean Performance Tests 2022, J. F. Carlin, R. B. Mulloy, R. D. Bond

Arkansas Agricultural Experiment Station Research Series

Soybean variety and strain performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture’s Arkansas Crop Variety Improvement Program. The tests provide information to companies developing varieties and/ or marketing seed within the state, and aid the Arkansas Cooperative Extension Service in formulating variety recommendations for soybean producers.


Do Cover Crop Mixtures Improve Soil Physical Health More Than Monocultures?, Humberto Blanco-Canqui Jun 2023

Do Cover Crop Mixtures Improve Soil Physical Health More Than Monocultures?, Humberto Blanco-Canqui

Department of Agronomy and Horticulture: Faculty Publications

Rationale and Purpose — Adding multispecies cover crop (CC) mixtures could diversify the current simplified crop rotations and enhance soil health more than monoculture CCs. Further, CC mixtures with diverse plant species could adapt better to changing climatic and environmental conditions than monoculture CCs. However, our current understanding of the soil benefits of CC mixtures is still limited. This review discussed whether CC mixtures are better than monoculture CCs to improve soil physical health.

Methods — All studies published up to May 25, 2023, comparing soil physical properties between CC mixtures and their constituents grown as monocultures were searched in …


Fluidity And Inconstancy: Australian Bush Tomatoes As An Exemplar Of Non-Normative Sex Expression, Christopher T. Martine Jun 2023

Fluidity And Inconstancy: Australian Bush Tomatoes As An Exemplar Of Non-Normative Sex Expression, Christopher T. Martine

Faculty Journal Articles

Solanum, a genus of ~1500 global species, is one of the more interesting plant groups in which to study reproductive biology and ecology. Overwhelmingly, species in this group express full cosexuality, where individual plants have flowers containing both fully-functioning “male” (staminate) and “female” (carpellate) organs. However, there have been multiple and widespread evolutionary transitions within the genus to non-normative variations on this ancestral condition. Australian bush tomatoes (ca. 40 species) are especially diverse in this regard, with uncommon variation and combinations of unisexuality and cosexuality -- including, most notably, two sexual systems known as dioecy (unisexual male or female …


A Foundational Population Genetics Investigation Of The Sexual Systems Of Solanum (Solanaceae) In The Australian Monsoon Tropics Suggests Dioecious Taxa May Benefit From Increased Genetic Admixture Via Obligate Outcrossing, Jason T. Cantley, Ingrid E. Jordon-Thaden, Morgan Roche, Daniel S. Hayes, Stephamie Kate, Christopher T. Martine May 2023

A Foundational Population Genetics Investigation Of The Sexual Systems Of Solanum (Solanaceae) In The Australian Monsoon Tropics Suggests Dioecious Taxa May Benefit From Increased Genetic Admixture Via Obligate Outcrossing, Jason T. Cantley, Ingrid E. Jordon-Thaden, Morgan Roche, Daniel S. Hayes, Stephamie Kate, Christopher T. Martine

Faculty Journal Articles

Solanum section Leptostemonum is an ideal lineage to test the theoretical framework regarding proposed evolutionary benefits of outcrossing sexual systems in comparison to cosexuality. Theoretically, non-cosexual taxa should support more genetic diversity within populations, experience less inbreeding, and have less genetic structure due to a restricted ability to self-fertilize. However, many confounding factors present challenges for a confident inference that inherent differences in sexual systems influence observed genetic patterns among populations. This study provides a foundational baseline of the population genetics of several species of different sexual systems with the aim of generating hypotheses of any factor—including sexual system—that influences …


A Most Surprising Fern: Serendipity And Browsing In Botanical Search, Douglas Tuers May 2023

A Most Surprising Fern: Serendipity And Browsing In Botanical Search, Douglas Tuers

Journal of the South Carolina Academy of Science

This article is a case study of botanical field work in the eastern United States in the early twentieth century. These cases will be analyzed as instances of browsing and serendipity. Browsing and serendipity have a rich literature in information science and this article will draw on this literature in order to better understand serendipity in botany. This article will show how botanical localities support browsing and serendipity for the botanists who search them. This article will also show how botanical institutions and botanists interface with localities in order to further support browsing and serendipity. As a whole this article …


2018–2019 Field Seasons Of The Maize Genomes To Fields (G2f) G X E Project, Dayane Dayane Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Bridget A. Mcfarland, Shawn Kaeppler, David Ertl, Maria Cinta Romay, Joseph L. Gage, James Holland, Timothy Beissinger, Martin Bohn, Edward Buckler, Jode Edwards, Sherry Flint‑Garcia, Candice N. Hirsch, Elizabeth Hood, David C. Hooker, Joseph E. Knoll, Judith M. Kolkman, Sanzhen Liu, John Mckay, Richard Minyo, Danilo E. Moreta, Seth C. Murray, Rebecca Nelson, James C. Schnable, Rajandeep S. Sekhon, Maninder P. Singh, Peter Thomison, Addie Thompson, Mitchell Tuinstra, Jason Wallace, Jacob D. Washburn, Teclemariam Weldekidan, Randall J. Wisser, Wenwei Xu31, Natalia De Leon May 2023

2018–2019 Field Seasons Of The Maize Genomes To Fields (G2f) G X E Project, Dayane Dayane Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Bridget A. Mcfarland, Shawn Kaeppler, David Ertl, Maria Cinta Romay, Joseph L. Gage, James Holland, Timothy Beissinger, Martin Bohn, Edward Buckler, Jode Edwards, Sherry Flint‑Garcia, Candice N. Hirsch, Elizabeth Hood, David C. Hooker, Joseph E. Knoll, Judith M. Kolkman, Sanzhen Liu, John Mckay, Richard Minyo, Danilo E. Moreta, Seth C. Murray, Rebecca Nelson, James C. Schnable, Rajandeep S. Sekhon, Maninder P. Singh, Peter Thomison, Addie Thompson, Mitchell Tuinstra, Jason Wallace, Jacob D. Washburn, Teclemariam Weldekidan, Randall J. Wisser, Wenwei Xu31, Natalia De Leon

Department of Agronomy and Horticulture: Faculty Publications

Objectives This report provides information about the public release of the 2018–2019 Maize G X E project of the Genomes to Fields (G2F) Initiative datasets. G2F is an umbrella initiative that evaluates maize hybrids and inbred lines across multiple environments and makes available phenotypic, genotypic, environmental, and metadata information. The initiative understands the necessity to characterize and deploy public sources of genetic diversity to face the challenges for more sustainable agriculture in the context of variable environmental conditions.

Data description Datasets include phenotypic, climatic, and soil measurements, metadata information, and inbred genotypic information for each combination of location and year. …


Creeper Legume, In Conjunction With Biochar, Is A Potential Tool To Minimize Soil Erosion, Sujani De Silva, Priyantha Indralal Yapa, Kushani Mahatantila, Saurav Das, Bijesh Maharjan May 2023

Creeper Legume, In Conjunction With Biochar, Is A Potential Tool To Minimize Soil Erosion, Sujani De Silva, Priyantha Indralal Yapa, Kushani Mahatantila, Saurav Das, Bijesh Maharjan

Department of Agronomy and Horticulture: Faculty Publications

Accelerated soil erosion and landslides are destructive consequences of road development and intensive agriculture in the central highlands of Sri Lanka. Properly designed vegetation covers can play a vital role in erosion control. Identifying a plant that can adapt to eroded land with a low-nutrient supply is critical for natural erosion management. A perennial creeper legume, Vigna marina, adaptable for marginal lands and used to control soil erosion in Australia, was introduced to Sri Lanka via the 2004 tsunami. The objective of this study was to assess V. marina under five different soil substrates, including a reference treatment (RT) …


Effectiveness Of Tadreb-B1 And 1-Feh W3 Kasp Markers In Spring And Winter Wheat Populations For Marker-Assisted Selection To Improve Drought Tolerance, Shamseldeen Eltaher, Mostafa Hashem, Asmaa A. M. Ahmed, P. Stephen Baenziger, Andreas Börner, Ahmed Sallam May 2023

Effectiveness Of Tadreb-B1 And 1-Feh W3 Kasp Markers In Spring And Winter Wheat Populations For Marker-Assisted Selection To Improve Drought Tolerance, Shamseldeen Eltaher, Mostafa Hashem, Asmaa A. M. Ahmed, P. Stephen Baenziger, Andreas Börner, Ahmed Sallam

Department of Agronomy and Horticulture: Faculty Publications

Due to the advances in DNA markers, kompetitive allele-specific PCR (KASP) markers could accelerate breeding programs and genetically improve drought tolerance. Two previously reported KASP markers, TaDreb-B1 and 1-FEH w3, were investigated in this study for the markerassisted selection (MAS) of drought tolerance. Two highly diverse spring and winter wheat populations were genotyped using these two KASP markers. The same populations were evaluated for drought tolerance at seedling (drought stress) and reproductive (normal and drought stress) growth stages. The single-marker analysis revealed a high significant association between the target allele of 1-FEH w3 and drought susceptibility in the spring …


Mowing Cattail Cover To Increase Aquatic Vegetation Diversity On The Coeur D’Alene River Floodplain In Cataldo, Idaho, Makenna J. Tabino May 2023

Mowing Cattail Cover To Increase Aquatic Vegetation Diversity On The Coeur D’Alene River Floodplain In Cataldo, Idaho, Makenna J. Tabino

2023 Symposium

The Schlepp Easement is a 400 acre wetland on the Coeur D’Alene River floodplain, near Cataldo, Idaho. The wetland has been restored to protect it from heavy metal pollution transported downstream from mining sites near Kellogg, Idaho, the location of the Bunker Hill EPA Superfund Site. This wetland was restored to provide safe habitats and feeding grounds for migratory waterfowl and to maintain wetland biodiversity. However, cattail is prone to becoming overdominant and outcompeting other plants, which greatly limits a wetland’s biodiversity. Our objectives were to test whether aquatic boat mowing can reduce cattail cover, improving species diversity and cover …


Long-Term Conservation And Conventional Tillage Systems Impact Physical And Biochemical Soil Health Indicators In A Corn–Soybean Rotation, Anuoluwa O. Sangotayo, Jemila Chellappa, Udayakumar Sekaran, Sangeeta Bansal, Padma Angmo, Paul J. Jasa, Sandeep Kumar, Javed Iqbal May 2023

Long-Term Conservation And Conventional Tillage Systems Impact Physical And Biochemical Soil Health Indicators In A Corn–Soybean Rotation, Anuoluwa O. Sangotayo, Jemila Chellappa, Udayakumar Sekaran, Sangeeta Bansal, Padma Angmo, Paul J. Jasa, Sandeep Kumar, Javed Iqbal

Department of Agronomy and Horticulture: Faculty Publications

Agricultural management practices tend to influence soil structure stabilization, mediating many physical, chemical, and biological processes in soils. Therefore, understanding the long-term effects of management practices on various soil health indicators is crucial to develop sustainable agricultural practices. This study aimed to assess the long-term conventional and conservation tillage effects on soil physical (aggregates) and biochemical (soil organic carbon [SOC], enzymes, and microbial biomass) parameters under a range of tillage practices in a corn–soybean rotation in Nebraska. The experiment was conducted at two locations as follows: (1) Concord site (36 years) with the three treatments: no-till (NT), disk, and moldboard …


Hybrid Allele‑Specific Chip‑Seq Analysis Identifies Variation In Brassinosteroid‑Responsive Transcription Factor Binding Linked To Traits In Maize, Thomas Hartwig, Michael Banf, Gisele Passaia Prietsch, Jia‑Ying Zhu, Isabel Mora‑Ramírez, Jos H. M. Schippers, Samantha J. Snodgrass, Arun S. Seetharam, Bruno Huettel, Judith M. Kolkman, Jiashi Yang, Julia Engelhorn, Zhi‑Yong Wang May 2023

Hybrid Allele‑Specific Chip‑Seq Analysis Identifies Variation In Brassinosteroid‑Responsive Transcription Factor Binding Linked To Traits In Maize, Thomas Hartwig, Michael Banf, Gisele Passaia Prietsch, Jia‑Ying Zhu, Isabel Mora‑Ramírez, Jos H. M. Schippers, Samantha J. Snodgrass, Arun S. Seetharam, Bruno Huettel, Judith M. Kolkman, Jiashi Yang, Julia Engelhorn, Zhi‑Yong Wang

Department of Agronomy and Horticulture: Faculty Publications

Background: Genetic variation in regulatory sequences that alter transcription factor (TF) binding is a major cause of phenotypic diversity. Brassinosteroid is a growth hormone that has major effects on plant phenotypes. Genetic variation in brassinosteroidresponsive cis-elements likely contributes to trait variation. Pinpointing such regulatory variations and quantitative genomic analysis of the variation in TF-target binding, however, remains challenging. How variation in transcriptional targets of signaling pathways such as the brassinosteroid pathway contributes to phenotypic variation is an important question to be investigated with innovative approaches.

Results: Here, we use a hybrid allele-specific chromatin binding sequencing (HASChseq) approach and …


Dendroctonus Ponderosae (Coleoptera: Curculionidae) Observations From Wheeler Peak Campground, Great Basin National Park, Justin P. Williams, Danielle Malesky May 2023

Dendroctonus Ponderosae (Coleoptera: Curculionidae) Observations From Wheeler Peak Campground, Great Basin National Park, Justin P. Williams, Danielle Malesky

Western North American Naturalist

Mountain pine beetle (Dendroctonus ponderosae Hopkins, 1902; MPB) has been causing limber pine (Pinus flexilis E. James) mortality at Great Basin National Park, Nevada, including at Wheeler Peak Campground, for many years. Research has shown that MPB voltinism and phenology are strongly influenced by climate and can vary by location and elevation, indicating the need for localized observations to inform treatment recommendations in some cases. We used emergence cages on infested tree boles, baited Lindgren funnel traps, and ambient air temperatures to describe MPB adult flight timing over 2 years. Adult MPB flight at this high-elevation site occurred …


Distribution Of Astragalus Amnis-Amissi (Fabaceae), A Plant Endemic To East-Central Idaho, Michael Daines May 2023

Distribution Of Astragalus Amnis-Amissi (Fabaceae), A Plant Endemic To East-Central Idaho, Michael Daines

Western North American Naturalist

Astragalus amnis-amissi (Fabaceae), or Lost River milkvetch, is a plant endemic to east-central Idaho for which no published surveys have been completed in the last 18 years. A search for several previously documented populations in canyons of the southern Lemhi Range and the Lost River Range, in Butte and Custer Counties, Idaho, documented the species in 4 canyons. However, it was not relocated in an unnamed canyon in the southern Lemhi Range, indicating potential extirpation of 1 of 2 previously known populations documented on land managed by the USDI Bureau of Land Management. No new populations of A. amnis-amissi were …


Effects Of Nonnative Plants On Space-Use In Eastern Box Turtles, Emily Ilene Crago May 2023

Effects Of Nonnative Plants On Space-Use In Eastern Box Turtles, Emily Ilene Crago

Graduate Theses

Introduction of nonnative plants outside their natural range has caused widespread reduction in the abundance and diversity of native plant species. Nonnative plants typically form dense, often monotypic, thickets that affect the ability of animals to find food, reproduce, avoid predation risk, and thermoregulate. By doing so, nonnative plants have the potential to displace resident animals from areas otherwise suitable as animal habitat. However, limited studies have investigated whether resident animals avoid areas dominated by nonnative plants. This study investigated impacts of nonnative plants on eastern box turtles (Terrapene carolina carolina), a species that has been declining throughout their range. …


Seasonal Phenology And Starch Allocation Patterns Of Cuban Bulrush (Oxycaryum Cubense) Growing In Mississippi, Usa, Madeline Clarke, Ryan M. Wersal, Gray Turnage May 2023

Seasonal Phenology And Starch Allocation Patterns Of Cuban Bulrush (Oxycaryum Cubense) Growing In Mississippi, Usa, Madeline Clarke, Ryan M. Wersal, Gray Turnage

Biological Sciences Department Publications

Seasonal patterns of biomass and starch allocation for the aquatic invasive species (AIS) Cuban bulrush were quantified in populations from Lake Columbus on the Tennessee-Tombigbee Waterway in Mississippi. Monthly samples of Cuban bulrush were harvested from five plots from May 2019 to April 2021. During each sampling event, water pH, water temperature, air temperature, and photosynthetically active radiation (PAR) were recorded. Average peak total biomass was 309.0 g DW m−2, 290.0 g DW m−2, and 129.3 g DW m−2 in 2019, 2020, and 2021 respectively and usually occurred in late fall or early winter months (November to January). Biomass allocation …


Evaluating Planting Green And Herbicides For Integrated Weed Management And Their Effect On Soil Properties In Corn And Soybean In Nebraska, Trey Parker Stephens May 2023

Evaluating Planting Green And Herbicides For Integrated Weed Management And Their Effect On Soil Properties In Corn And Soybean In Nebraska, Trey Parker Stephens

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Producers across the Midwest are finding new ways to implement cover crops into cropping systems and the practice of “Planting Green” is one of the newest uses of cover crops. When planting green, producers plant their row crops into actively growing cover crops and terminate the cover crop at time of planting or shortly after planting. This practice would allow for higher biomass accumulation of the cover crop and could aid in weed management of herbicide-resistant weeds. The objective of the first two studies was to evaluate planting green and its effect on soil-applied residual herbicides, weed management, dicamba/glyphosate-resistant soybean …


Genomic Selection For Yield And Seed Composition Stability In An Applied Soybean Breeding Program, Benjamin Mark Harms May 2023

Genomic Selection For Yield And Seed Composition Stability In An Applied Soybean Breeding Program, Benjamin Mark Harms

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Stability traits are of primary importance in plant breeding to ensure consistency in phenotype across a range of environments. However, selection efficiency and accuracy for stability traits can be hindered due to the requirement of obtaining phenotype data across multiple years and environments for proper stability analysis. Genomic selection is a method that allows prediction of a phenotype prior to observation in the field using genome-wide marker data and phenotype data from a training population. To assess prediction of stability traits, two elite-yielding soybean populations developed three years apart in the same breeding program were used. The individuals in each …


Plasticity Of Sorghum Biomass And Inflorescence Traits In Response To Nitrogen Application, Kyle M. Linders May 2023

Plasticity Of Sorghum Biomass And Inflorescence Traits In Response To Nitrogen Application, Kyle M. Linders

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Nitrogen is an essential nutrient required for growth and development in plants. Insufficient nitrogen availability can reduce vegetative growth and grain yield. However, nitrogen is a costly input for farmers, is energy intensive to manufacture, and runoff of excess nitrogen fertilizer impacts water quality. Compared to its close relative, maize, sorghum has much greater resilience to nitrogen and water deficit, and heat stress, allowing sorghum to be grown with fewer inputs and on marginal land. Variation in total biomass accumulation and grain yield between sorghum accessions, as well as between nitrogen conditions, can be largely explained by differences in vegetative …