Open Access. Powered by Scholars. Published by Universities.®

Botany Commons

Open Access. Powered by Scholars. Published by Universities.®

2017

Discipline
Institution
Keyword
Publication
Publication Type
File Type

Articles 271 - 300 of 319

Full-Text Articles in Botany

Can Yield Gap Analysis Be Used To Inform R & D Prioritisation?, P. A. J. Van Oort, K. Saito, I. Dieng, P. Grassini, K. G. Cassman, M. K. Van Ittersum Jan 2017

Can Yield Gap Analysis Be Used To Inform R & D Prioritisation?, P. A. J. Van Oort, K. Saito, I. Dieng, P. Grassini, K. G. Cassman, M. K. Van Ittersum

Department of Agronomy and Horticulture: Faculty Publications

The phrase “biggest bang for a buck” is associated with the policy making question that governments and development agencies face: “Where and which crops should receive highest priority for improving local and global food supply?”. A first step of prioritisation is to identify region x crop combinations for which high impact can be anticipated. We developed a new method for this prioritisation exercise and applied it to data from the Global Yield Gap and Water Productivity Atlas (GYGA). Our prioritisation distinguishes between two policy objectives (humanitarian and economic) and builds upon the relative yield gap and climate risk. Results of …


Supplemental Material For: Multi-Site Evaluation Of Apex For Water Quality: Ii. Regional Parameterization, Nathan O. Nelson, Claire Baffaut, John A. Lory, G.M.M.M. Anomaa Senaviratne, Ammar B. Bhandari, Ranjith P. Udawatta, Daniel W. Sweeney, Matt J. Helmers, Mike W. Van Liew, Antonio P. Mallarino, Charles S. Wortmann Jan 2017

Supplemental Material For: Multi-Site Evaluation Of Apex For Water Quality: Ii. Regional Parameterization, Nathan O. Nelson, Claire Baffaut, John A. Lory, G.M.M.M. Anomaa Senaviratne, Ammar B. Bhandari, Ranjith P. Udawatta, Daniel W. Sweeney, Matt J. Helmers, Mike W. Van Liew, Antonio P. Mallarino, Charles S. Wortmann

Department of Agronomy and Horticulture: Faculty Publications

Model performance was assessed using Nash-Sutcliffe model efficiency (NSE), coefficient of determination (r2), and percent bias (PBIAS) as defined by Moriasi et al. (2007 and 2015). Threshold values indicating acceptable model performance based on these statistics are dependent on the spatial and temporal scales of the data, water quality constituents of interest, and the modeling objectives (Moriasi et al., 2015). Although some standard values have been suggested (Moriasi et al., 2007 and 2015), considerable variability exist in the published literature. For instance Ramanarayan et al. (1997) considered r2 >0.5 and NSE >0.40 as satisfactory for simulation of …


Multisite Evaluation Of Apex For Water Quality: I. Best Professional Judgment Parameterization, Claire Baffaut, Nathan O. Nelson, John A. Lory, G.M.M.M. Anomaa Senaviratne, Ammar B. Bhandari, Ranjith P. Udawatta, Daniel W. Sweeney, Matt J. Helmers, M. W. Van Liew, Antonio P. Mallarino, Charles S. Wortmann Jan 2017

Multisite Evaluation Of Apex For Water Quality: I. Best Professional Judgment Parameterization, Claire Baffaut, Nathan O. Nelson, John A. Lory, G.M.M.M. Anomaa Senaviratne, Ammar B. Bhandari, Ranjith P. Udawatta, Daniel W. Sweeney, Matt J. Helmers, M. W. Van Liew, Antonio P. Mallarino, Charles S. Wortmann

Department of Agronomy and Horticulture: Faculty Publications

The Agricultural Policy Environmental eXtender (APEX) model is capable of estimating edge-of-field water, nutrient, and sediment transport and is used to assess the environmental impacts of management practices. The current practice is to fully calibrate the model for each site simulation, a task that requires resources and data not always available. The objective of this study was to compare model performance for flow, sediment, and phosphorus transport under two parameterization schemes: a best professional judgment (BPJ) parameterization based on readily available data and a fully calibrated parameterization based on site-specific soil, weather, event flow, and water quality data. The analysis …


Genotype, Environment, Seeding Rate, And Top-Dressed Nitrogen Effects On End-Use Quality Of Modern Nebraska Winter Wheat, Madhav Bhatta, Teshome Regassa, Devin J. Rose, P. Stephen Baenziger, Kent M. Eskridge, Dipak K. Santra, Rachana Poudel Jan 2017

Genotype, Environment, Seeding Rate, And Top-Dressed Nitrogen Effects On End-Use Quality Of Modern Nebraska Winter Wheat, Madhav Bhatta, Teshome Regassa, Devin J. Rose, P. Stephen Baenziger, Kent M. Eskridge, Dipak K. Santra, Rachana Poudel

Department of Agronomy and Horticulture: Faculty Publications

Background: Fine-tuning production inputs such as seeding rate, nitrogen (N), and genotype may improve end-use quality of hard red winter wheat (Triticum aestivium L.) when growing conditions are unpredictable. Studies were conducted at the Agronomy Research Farm (ARF; Lincoln, NE, USA) and the High Plains Agricultural Laboratory (HPAL; Sidney, NE, USA) in 2014 and 2015 in Nebraska, USA, to determine the effects of genotype (6), environment (4), seeding rate (3), and flag leaf top-dressed N (0 and 34 kg N ha−1) on the end-use quality of winter wheat.

Results: End-use quality traits were influenced by environment, genotype, …


Author Correction: Genome-Guided Phylo-Transcriptomic Methods And The Nuclear Phylogenetic Tree Of The Paniceae Grasses, Jacob D. Washburn, James C. Schnable, Gavin C. Conant, Thomas P. Brutnell, Ying Shao, Yang Zhang, Martha Ludwig, Gerrit Davidse, J. Chris Pires Jan 2017

Author Correction: Genome-Guided Phylo-Transcriptomic Methods And The Nuclear Phylogenetic Tree Of The Paniceae Grasses, Jacob D. Washburn, James C. Schnable, Gavin C. Conant, Thomas P. Brutnell, Ying Shao, Yang Zhang, Martha Ludwig, Gerrit Davidse, J. Chris Pires

Department of Agronomy and Horticulture: Faculty Publications

The original version of this Article contained an error in the title of the paper, where the word “Phylogenetic” was incorrectly given as “Phylogentic”. This has now been corrected in the PDF and HTML versions of the Article, and in the accompanying Supplementary Information file.


Lettuce Learn: Student Reflections On Building And Sustaining A Community Donation Garden, Hannah Dankbar, Emily K. Zimmerman, Carrie Chennault, Andrea D. Basche, Jacqueline Ann Nester, Maritza Pierre, Gabrielle Roesch-Mcnally Jan 2017

Lettuce Learn: Student Reflections On Building And Sustaining A Community Donation Garden, Hannah Dankbar, Emily K. Zimmerman, Carrie Chennault, Andrea D. Basche, Jacqueline Ann Nester, Maritza Pierre, Gabrielle Roesch-Mcnally

Department of Agronomy and Horticulture: Faculty Publications

This article emerged from conversations that we and fellow graduate students have had in building a community donation garden. We created the garden with a vision of enacting food justice in our community, but over the past four years we have experienced complexities with our vision. In this article, we share the complexities with which we have wrestled, how we have encouraged thoughtful dialogue among fellow scholars about these shortcomings and the intricate workings of the agrifood system, and the lessons we have learned through these experiences as early-career scholar-activists. This article represents our collective and individual voices as graduate …


The Impact Of Continuous Living Cover On Soil Hydrologic Properties: A Meta-Analysis, Andrea D. Basche, Marcia Delonge Jan 2017

The Impact Of Continuous Living Cover On Soil Hydrologic Properties: A Meta-Analysis, Andrea D. Basche, Marcia Delonge

Department of Agronomy and Horticulture: Faculty Publications

Increased rainfall variability due to climate change threatens the efficacy of critical soil ecosystem services. One strategy to negate effects of too much or not enough rainfall is to improve soil water properties. Practices that offer “continuous living cover” can enhance soil water storage and other soil hydrologic properties relative to annual crop systems, but to what extent such benefits can accrue, under different conditions, remains under-quantified. To address these uncertainties, we conducted a meta-analysis that included 27 studies representing 93 paired observations measuring two soil hydrologic properties: porosity and the water retained at field capacity. All experiments compared the …


Research Topics To Scale Up Cover Crop Use: Reflections From Innovative Iowa Farmers, Andrea D. Basche, Gabrielle E. Roesch-Mcnally Jan 2017

Research Topics To Scale Up Cover Crop Use: Reflections From Innovative Iowa Farmers, Andrea D. Basche, Gabrielle E. Roesch-Mcnally

Department of Agronomy and Horticulture: Faculty Publications

Cover crops as a conservation practice continue to receive attention from farmers, researchers, media, and policy makers, given their ability to effectively reduce water pollution and improve soil quality. Recent estimates of cover crop use across the midwestern Corn Belt, as well as the United States, demonstrate large acreage increases over the last number of years. The annual Sustainable Agriculture Research and Education–Conservation Technology Information Center (SARE– CTIC) survey found that nationally cover crop acreage doubled from 2011 to 2016, based on farmers self-reporting cover crop planting (CTIC 2016). However, the total cover crop acreage based on 2012 Census of …


Genotyping-By-Sequencing Derived High-Density Linkage Map And Its Application To Qtl Mapping Of Flag Leaf Traits In Bread Wheat, Waseem Hussain, P. Stephen Baenziger, Vikas Belamkar, Mary J. Guttieri, Jorge P. Venegas, Amanda Easterly, Ahmed Sallam, Jesse Poland Jan 2017

Genotyping-By-Sequencing Derived High-Density Linkage Map And Its Application To Qtl Mapping Of Flag Leaf Traits In Bread Wheat, Waseem Hussain, P. Stephen Baenziger, Vikas Belamkar, Mary J. Guttieri, Jorge P. Venegas, Amanda Easterly, Ahmed Sallam, Jesse Poland

Department of Agronomy and Horticulture: Faculty Publications

Winter wheat parents ‘Harry’ (drought tolerant) and ‘Wesley’ (drought susceptible) were used to develop a recombinant inbred population with future goals of identifying genomic regions associated with drought tolerance. To precisely map genomic regions, high-density linkage maps are a prerequisite. In this study genotyping-by-sequencing (GBS) was used to construct the high-density linkage map. The map contained 3,641 markers distributed on 21 chromosomes and spanned 1,959 cM with an average distance of 1.8 cM between markers. The constructed linkage map revealed strong collinearity in marker order across 21 chromosomes with POPSEQ-v2.0, which was based on a high-density linkage map. The reliability …


Shifts In Microbial Communities In Soil, Rhizosphere And Roots Of Two Major Crop Systems Under Elevated Co2 And O3, Peng Wang, Ellen L. Marsh, Elizabeth A. Ainsworth, Andrew D. B. Leakey, Amy M. Sheflin, Daniel P. Schachtman Jan 2017

Shifts In Microbial Communities In Soil, Rhizosphere And Roots Of Two Major Crop Systems Under Elevated Co2 And O3, Peng Wang, Ellen L. Marsh, Elizabeth A. Ainsworth, Andrew D. B. Leakey, Amy M. Sheflin, Daniel P. Schachtman

Department of Agronomy and Horticulture: Faculty Publications

Rising atmospheric concentrations of CO2 and O3 are key features of global environmental change. To investigate changes in the belowground bacterial community composition in response to elevated CO2 and O3 (eCO2 and eO3) the endosphere, rhizosphere and soil were sampled from soybeans under eCO2 and maize under eO3. The maize rhizosphere and endosphere α-diversity was higher than soybean, which may be due to a high relative abundance of Rhizobiales. Only the rhizosphere microbiome composition of the soybeans changed in response to eCO2, associated with an increased abundance of nitrogen …


Genomic-Enabled Prediction Accuracies Increased By Modeling Genotype × Environment Interaction In Durum Wheat, Sivakumar Sukumaran, Diego Jarquin, José Crossa, Matthew Reynolds Jan 2017

Genomic-Enabled Prediction Accuracies Increased By Modeling Genotype × Environment Interaction In Durum Wheat, Sivakumar Sukumaran, Diego Jarquin, José Crossa, Matthew Reynolds

Department of Agronomy and Horticulture: Faculty Publications

Genomic prediction studies incorporating genotype × environment (G×E) interaction effects are limited in durum wheat. We tested the genomic-enabled prediction accuracy (PA) of Genomic Best Linear Unbiased Predictor (GBLUP) models—six non-G × E and three G × E models—on three basic cross-validation (CV) schemes— in predicting incomplete field trials (CV2), new lines (CV1), and lines in untested environments (CV0)— in a durum wheat panel grown under yield potential, drought stress, and heat stress conditions. For CV0, three scenarios were considered: (i) leave-one environment out (CV0-Env); (ii) leave one site out (CV0- Site); and (iii) leave 1 yr out (CV0-Year). The …


Evaluation Of Jules-Crop Performance Against Site Observations Of Irrigated Maize From Mead, Nebraska, Karina Williams, Jemma Gornall, Anna Harper, Andy Wiltshire, Debbie Hemming, Tristan Quaife, Tim Arkebauer, David Scoby Jan 2017

Evaluation Of Jules-Crop Performance Against Site Observations Of Irrigated Maize From Mead, Nebraska, Karina Williams, Jemma Gornall, Anna Harper, Andy Wiltshire, Debbie Hemming, Tristan Quaife, Tim Arkebauer, David Scoby

Department of Agronomy and Horticulture: Faculty Publications

The JULES-crop model (Osborne et al., 2015) is a parametrisation of crops within the Joint UK Land Environment Simulator (JULES), which aims to simulate both the impact of weather and climate on crop productivity and the impact of croplands on weather and climate. In this evaluation paper, observations of maize at three FLUXNET sites in Nebraska (US-Ne1, US-Ne2 and US-Ne3) are used to test model assumptions and make appropriate input parameter choices. JULES runs are performed for the irrigated sites (US-Ne1 and US-Ne2) both with the crop model switched off (prescribing leaf area index (LAI) and canopy height) and with …


Science In The Supply Chain: Collaboration Opportunities For Advancing Sustainable Agriculture In The United States, Allison M. Thomson, Stewart Ramsey, Ed Barnes, Bruno Basso, Marlen Eve, Sasha Gennet, Patricio Grassini, Brandon Kliethermes, Marty Matlock, Eileen Mcclellen, Ed Spevak, Clifford S. Snyder, Mark D. Tomer, Chris Van Kessel, Tristram West, Grant Wick Jan 2017

Science In The Supply Chain: Collaboration Opportunities For Advancing Sustainable Agriculture In The United States, Allison M. Thomson, Stewart Ramsey, Ed Barnes, Bruno Basso, Marlen Eve, Sasha Gennet, Patricio Grassini, Brandon Kliethermes, Marty Matlock, Eileen Mcclellen, Ed Spevak, Clifford S. Snyder, Mark D. Tomer, Chris Van Kessel, Tristram West, Grant Wick

Department of Agronomy and Horticulture: Faculty Publications

Consumers and corporations are increasingly interested in understanding the sustainability of agricultural supply chains and reducing the environmental impacts of food, fiber, feed, and fuel production. This emerging need to quantify environmental impacts from agricultural production creates an opportunity for collaboration with the scientific community. Without such collaboration, sustainability efforts risk failure by adopting unrealistic goals or misguided approaches. This commentary explores the role of science in Field to Market, a nonprofit organization developing a sustainability program for US commodity crops, and highlights opportunities to address emerging science challenges. We evaluate changes over the past 35 years in key environmental …


Genetic Characterization Of The Soybean Nested Association Mapping Population, Qijian Song, Long Yan, Charles Quigley, Brandon D. Jordan, Edward Fickus, Steve Schroeder, Bao-Hua Song, Yong-Qiang Charles An, David Hyten, Randall L. Nelson, Katy Rainey, William D. Beavis, Jim Specht, Brian Diers, Perry Cregan Jan 2017

Genetic Characterization Of The Soybean Nested Association Mapping Population, Qijian Song, Long Yan, Charles Quigley, Brandon D. Jordan, Edward Fickus, Steve Schroeder, Bao-Hua Song, Yong-Qiang Charles An, David Hyten, Randall L. Nelson, Katy Rainey, William D. Beavis, Jim Specht, Brian Diers, Perry Cregan

Department of Agronomy and Horticulture: Faculty Publications

A set of nested association mapping (NAM) families was developed by crossing 40 diverse soybean [Glycine max (L.) Merr.] genotypes to the common cultivar. The 41 parents were deeply sequenced for SNP discovery. Based on the polymorphism of the single-nucleotide polymorphisms (SNPs) and other selection criteria, a set of SNPs was selected to be included in the SoyNAM6K BeadChip for genotyping the parents and 5600 RILs from the 40 families. Analysis of the SNP profiles of the RILs showed a low average recombination rate. We constructed genetic linkage maps for each family and a composite linkage map based on …


Editorial: Genomic Approaches For Improvement Of Understudied Grasses, Keenan Amundsen, Gautam Sarath, Teresa Donze-Reiner Jan 2017

Editorial: Genomic Approaches For Improvement Of Understudied Grasses, Keenan Amundsen, Gautam Sarath, Teresa Donze-Reiner

Department of Agronomy and Horticulture: Faculty Publications

Grasses are diverse, spanning native prairies to high-yielding grain cropping systems. They are valued for their beauty and useful for soil stabilization, pollution mitigation, biofuel production, nutritional value, and forage quality; grasses encompass the most important grain crops in the world. There are thousands of distinct grass species and many have promiscuous hybridization patterns, blurring species boundaries. Resources for advancing the science and knowledgebase of individual grass species or their unique characteristics varies, often proportional to their perceived value to society. For many grasses, limited genetic information hinders research progress. Presented in this research topic is a brief snapshot of …


Expression Of The Maize Dof1 Transcription Factor In Wheat And Sorghum, Pamela A. Pena, Truyen Quach, Shirley Sato, Zhengxiang Ge, Natalya Nersesian, Taity Changa, Ismail M. Dweikat, Madhavan Soundararajan, Tom E. Clemente Jan 2017

Expression Of The Maize Dof1 Transcription Factor In Wheat And Sorghum, Pamela A. Pena, Truyen Quach, Shirley Sato, Zhengxiang Ge, Natalya Nersesian, Taity Changa, Ismail M. Dweikat, Madhavan Soundararajan, Tom E. Clemente

Department of Agronomy and Horticulture: Faculty Publications

Nitrogen is essential for plant growth and development. Improving the ability of plants to acquire and assimilate nitrogen more efficiently is a key agronomic parameter that will augment sustainability in agriculture. A transcription factor approach was pursued to address improvement of nitrogen use efficiency in two major commodity crops. To this end, the Zea mays Dof1 (ZmDof1) transcription factor was expressed in both wheat (Triticum aestivum) and sorghum (Sorghum bicolor) either constitutively, UBI4 promoter from sugarcane, or in a tissue specific fashion via the maize rbcS1 promoter. The primary transcription activation target of ZmDof1 …


High-Throughput Profiling And Analysis Of Plant Responses Over Time To Abiotic Stress, Kira M. Veley, Jeffrey C. Berry, Sarah J. Fentress, Daniel P. Schachtman, Ivan Baxter, Rebecca Bart Jan 2017

High-Throughput Profiling And Analysis Of Plant Responses Over Time To Abiotic Stress, Kira M. Veley, Jeffrey C. Berry, Sarah J. Fentress, Daniel P. Schachtman, Ivan Baxter, Rebecca Bart

Department of Agronomy and Horticulture: Faculty Publications

Sorghum (Sorghum bicolor (L.) Moench) is a rapidly growing, high-biomass crop prized for abiotic stress tolerance. However, measuring genotype-by-environment (G x E) interactions remains a progress bottleneck. We subjected a panel of 30 genetically diverse sorghum genotypes to a spectrum of nitrogen deprivation and measured responses using high-throughput phenotyping technology followed by ionomic profiling. Responses were quantified using shape (16 measurable outputs), color (hue and intensity), and ionome (18 elements). We measured the speed at which specific genotypes respond to environmental conditions, in terms of both biomass and color changes, and identified individual genotypes that perform most favorably. With this …


Influence Of Tillage On Common Ragweed (Ambrosia Artemisiifolia) Emergence Pattern In Nebraska, Ethann R. Barnes, Rodrigo Werle, Lowell Sandell, John L. Lindquist, Stevan Z. Knezevic, Peter H. Sikkema, Amit J. Jhala Jan 2017

Influence Of Tillage On Common Ragweed (Ambrosia Artemisiifolia) Emergence Pattern In Nebraska, Ethann R. Barnes, Rodrigo Werle, Lowell Sandell, John L. Lindquist, Stevan Z. Knezevic, Peter H. Sikkema, Amit J. Jhala

Department of Agronomy and Horticulture: Faculty Publications

Spring tillage is a component of an integrated weed management strategy for control of early emerging glyphosate-resistant weeds such as common ragweed; however, the effect of tillage on common ragweed emergence pattern is unknown. The objectives of this study were to evaluate whether spring tillage during emergence would influence the emergence pattern or stimulate additional emergence of common ragweed and to characterize common ragweed emergence in southeast Nebraska. A field experiment was conducted for three years (2014 to 2016) in Gage County, Nebraska in a field naturally infested with glyphosate-resistant common ragweed. Treatments consisted of a no-tillage control and three …


Actaea Racemosa: The Slender Wands Of Flowering Common Black Cohosh Beckon Us To Explore Woodlands, W. John Hayden Jan 2017

Actaea Racemosa: The Slender Wands Of Flowering Common Black Cohosh Beckon Us To Explore Woodlands, W. John Hayden

Biology Faculty Publications

Common Black Cohosh is a perennial rhizomatous forest herb. Its horizontal rhizomes bear numerous adventitious roots on the underside and aerial stems of annual duration on the upper side, along with knobby scars left from aerial stems of previous years. Leaves are alternate, twice or thrice compound in ternate or pinnate patterns, and large—up to 1 m long. Individual leaflet size and shape vary with position in the large compound leaves, with position of a leaf on the stem, and from population to population. Most often leaflets are coarsely serrate, lobed to deeply incised, with a truncate to cuneate base …


Taxonomic Revision Of Dendrobium Sw. Section Stachyobium Lindl. (Orchidaceae) In Thailand, Phataravee Prommanut Jan 2017

Taxonomic Revision Of Dendrobium Sw. Section Stachyobium Lindl. (Orchidaceae) In Thailand, Phataravee Prommanut

Chulalongkorn University Theses and Dissertations (Chula ETD)

Taxonomic revision of Dendrobium Sw. section Stachyobium Lindl. in Thailand has been conducted from 2015-2018 based on natural habitats observation in Thailand as well as various herbaria visits, i.e. BCU, BK, BKF, BM, C, CMUB, E, K, KKU and QBG. Key to species, taxonomic descriptions, ecological data, illustrations and geographical distribution of all taxa are provided. Twenty four taxa with including 21 species and 3 varieties were recognized. Among these, two species namely Dendrobium chiangdaoense and D. obchantiae are new to Thailand and two species viz. Dendrobium sp.2 and Dendrobium sp.3 are being proposed as new species. Besides, Dendrobium sp.1 …


Sepals And Petals And Stamens—Oh, My! Or, A Brief Discourse On Putative Homologies Of Perianth Elements Of Common Black Cohosh, W. John Hayden Jan 2017

Sepals And Petals And Stamens—Oh, My! Or, A Brief Discourse On Putative Homologies Of Perianth Elements Of Common Black Cohosh, W. John Hayden

Biology Faculty Publications

I encountered some contradictory information while preparing to write the 2017 Wildflower of the Year brochure: some sources describe flowers of Actaea racemosa, Common Black Cohosh, as having petals, while others say petals are absent. How can that be? How could there be such uncertainty about this common plant, one known to science since before the time of Linnaeus? After a little research, I decided to describe Black Cohosh flowers as having a series of organs interpretable either as staminodes (nonfunctional stamens) or as petals located between its sepals and stamens (Figure 1). Frankly, I waffled on the petal issue, …


Ecological Gradient Analyses Of Plant Associations In The Thandiani Forestsof The Western Himalayas, Pakistan, Waqas Khan, Shujaul Mulk Khan, Habib Ahmad, Aamir Shakeel, Sue Page Jan 2017

Ecological Gradient Analyses Of Plant Associations In The Thandiani Forestsof The Western Himalayas, Pakistan, Waqas Khan, Shujaul Mulk Khan, Habib Ahmad, Aamir Shakeel, Sue Page

Turkish Journal of Botany

In the summers of 2012 and 2013, vegetation of Thandiani in the Western Himalayas of Pakistan was surveyed and quantified. We took evidence from relationships between 252 species and 11 measured environmental factors as well as changes in the associations' structure among 50 analysed stations with 1500 m2 plots. We analysed how the plant associations differ and develop under the influence of their respective ecological gradients. Preliminary results showed that the family Pinaceae was the most abundant family with a family importance value (FIV) of 1892.4, followed by Rosaceae with FIV = 1478.2. Rosaceae, represented by 20 species, was the …


A New Bryophyte Community And Three New Records For The Epiphytic Bryophyte Vegetation Of Turkey, Mevlüt Alataş, Güray Uyar Jan 2017

A New Bryophyte Community And Three New Records For The Epiphytic Bryophyte Vegetation Of Turkey, Mevlüt Alataş, Güray Uyar

Turkish Journal of Botany

Based on 38 relevés, the Lewinskyetum affinis ass. nov. (Ulotion crispae alliance) was described and characterized as a new epiphytic association from the Abant Mountains (Northwest Turkey). To the best of our knowledge, this is the first report about three epiphytic bryophyte associations, namely Dicranetum taurici, Pterigynandretum filiformis, and Orthotricho straminei-Pterigynandretum filiformis, in Turkey. In addition, multivariate analysis techniques such as two-way indicator species analysis (TWINSPAN) and detrended correspondence analysis (DECORANA) were used to examine epiphytic bryophyte communities for cluster analysis and ordination analysis, respectively.


Molecular Characterization Of Edible Pea Through Est-Ssr Markers, Mohammad Nisar, Asaf Khan, Syed Fazal Wadood, Aftab Ali̇ Shah, Fati̇h Hanci Jan 2017

Molecular Characterization Of Edible Pea Through Est-Ssr Markers, Mohammad Nisar, Asaf Khan, Syed Fazal Wadood, Aftab Ali̇ Shah, Fati̇h Hanci

Turkish Journal of Botany

The genetic diversity among 23 newly developed homosegregate pea lines (Pisum sativum L.) was assessed with a total of 13 expressed sequence tag (EST) based-simple sequence repeat (SSR) markers. The percentages of amplified and nonamplified primers were 92% and 8%, respectively, and 58.33% of the used primers gave the PCR product within the reported size range while 41.66% of primers gave a different product size. Polymorphism information content (PIC), major allele frequency, and variation in genetic diversity were calculated. The PIC ranged from 0.32 to 0.63 with an average of 0.50. Major allele frequency ranged from 0.48 to 0.78 with …


Assessment Of Genetic Diversity Of Rose Genotypes Using Issr Markers, Ti̇jen Oğraş, Evren Koban Baştanlar, Özge Karakaş Meti̇n, İrfan Kandemi̇r, Hasan Özçeli̇k Jan 2017

Assessment Of Genetic Diversity Of Rose Genotypes Using Issr Markers, Ti̇jen Oğraş, Evren Koban Baştanlar, Özge Karakaş Meti̇n, İrfan Kandemi̇r, Hasan Özçeli̇k

Turkish Journal of Botany

The genus Rosa L. (Rosaceae) is an important ornamental crop with a high economic value in floriculture, cosmetics, and pharmaceutical industries. Turkey is an important country in rose cultivation with unique species and cultivars, especially for rose oil production. Breeding programs of different rose genotypes are crucial for the development of new commercial varieties. In this study, genetic relationships among the old rose cultivars locally grown in Isparta were assessed by DNA fingerprinting. Inter-simple sequence repeats markers (ISSRs) were used to investigate the genetic diversity among nineteen locally grown rose genotypes. Nineteen ISSR primers yielded a total of 413 scorable …


A New Species Of Micromeria (Lamiaceae) From Köyceğiz (Muğla, Southwest Of Turkey), Hayri̇ Duman, Tuncay Di̇rmenci̇ Jan 2017

A New Species Of Micromeria (Lamiaceae) From Köyceğiz (Muğla, Southwest Of Turkey), Hayri̇ Duman, Tuncay Di̇rmenci̇

Turkish Journal of Botany

A new species, Micromeria aybalae H.Duman & Dirmenci (Lamiaceae), Micromeria Benth. sect. Micromeria, is described from Muğla Province in southwestern Turkey. A description, taxonomic note, distribution map, habitat, and nrDNA ITS and cpDNA trnL-F based phylogeny are presented. The differences between the new species and its allies, Micromeria cremnophila Boiss. & Heldr. s.l. and M. hispida Benth., are discussed, and an identification key is provided for the Turkish Micromeria.


Taxonomy Of Poa Jubata And A New Section Of The Genus (Poaceae), Evren Cabi̇, Robert John Soreng, Lynn Gillespie Jan 2017

Taxonomy Of Poa Jubata And A New Section Of The Genus (Poaceae), Evren Cabi̇, Robert John Soreng, Lynn Gillespie

Turkish Journal of Botany

Poa jubata A.Kern. is an ephemeral, southeastern European species of which little is known. A molecular phylogenetic analysis of Poa L., including all previously identified major lineages, shows this species to be isolated, with a genotype here designated as J (plastid) j (nrDNA). It is assigned to the monotypic P. sect. Jubatae sect. nov. The section is differentiated from other Poa sections in having 5-nerved upper glumes, very narrow palea flanges, an annual habit, and erect solitary culms. Poa jubata occurs along coastal regions of the Balkans and is rather rare. Two new collections were made in 2015 in Thrace, …


Evaluating The Utility Of Rbcl In Identifying Nigerian Speciesof The Genus Afzelia Sm. (Fabaceae; Caesalpinioideae), Aramide Oshingboye, George Nodza, Temitope Onuminya, Oluwatoyin Ogundipe Jan 2017

Evaluating The Utility Of Rbcl In Identifying Nigerian Speciesof The Genus Afzelia Sm. (Fabaceae; Caesalpinioideae), Aramide Oshingboye, George Nodza, Temitope Onuminya, Oluwatoyin Ogundipe

Turkish Journal of Botany

The genus Afzelia Sm. (Fabaceae) represents one of the most useful tree species in tropical Africa. These trees have huge socioeconomic and ecological importance, but are under serious threat from incessant exploitation. This has caused a decline of the species in the wild; several species are now registered as threatened and endangered in the IUCN red list. However, conserving this species for posterity has been hampered by the complexity of morphological characters that exist among Afzelia species. In our study, we evaluated the utility of rbcL as a single barcode region, exploring its performance to accurately identify Nigerian Afzelia species …


A Taxonomic Study Of The Silene Sections Behenantha And Dichotomae (Caryophyllaceae) In Turkey Based On The Micromorphology Of Their Seed And Pollen, Mehmet Kuh, Kemal Yildiz, Ersi̇n Mi̇nareci̇ Jan 2017

A Taxonomic Study Of The Silene Sections Behenantha And Dichotomae (Caryophyllaceae) In Turkey Based On The Micromorphology Of Their Seed And Pollen, Mehmet Kuh, Kemal Yildiz, Ersi̇n Mi̇nareci̇

Turkish Journal of Botany

The seed and pollen grain micromorphologies of 10 taxa of the Silene sections Behenantha and Dichotomae (Caryophyllaceae) were analyzed in this study. Although the seeds of the analyzed taxa were generally reniform, S. tenuiflora and S. koycegizensis from the section Behenantha were clearly distinct from other taxa, while subspecies of S. dichotoma and S. euxina in the section Dichotomae showed differences. Pollen grains are periporate and spheroidal and ornamentation is generally spinulate-microperforate in all taxa. However, ornamentation is spinulate in S. euxina and semireticulate in S. koycegizensis. While the exine structure is generally tectate, it is semitectate in S. koycegizensis. …


Habitat Factors Influencing The Competitive Ability Of Calamagrostis Epigejos (L.) Roth In Mountain Plant Communities, Daniel Pruchniewicz, Ludwik Zolnierz, Vlatko Andonovski Jan 2017

Habitat Factors Influencing The Competitive Ability Of Calamagrostis Epigejos (L.) Roth In Mountain Plant Communities, Daniel Pruchniewicz, Ludwik Zolnierz, Vlatko Andonovski

Turkish Journal of Botany

The aim of this study was to assess how the expansion of Calamagrostis epigejos influences the species composition and diversity of forest, clearing, and meadow communities as well as how habitat factors influence biometric variability and features determining the potential of Calamagrostis epigejos for expansion in the studied communities. The study was conducted in the central part of the Sudetes Mountains (SW Poland). Four types of communities with C. epigejos occurrence were chosen: a beech forest (Luzulo luzuloidis-Fagetum), a Norway spruce monoculture, a clearing community belonging to the Epilobietea angustifolii class, and a mesic mountain meadow of the Arrhenatheretalia order. …