Botany Commons^™

The Role Of Albino3 And The Lipid Environment In Chloroplast Signal Recognition Particle Targeting, Nathan Lewis

Graduate Theses and Dissertations

Signal recognition particles (SRPs) in pro- and eukaryotes function in cotranslational targeting of nascent poplypeptides to an SRP receptor at the target membrane. A unique chloroplast SRP (cpSRP) functions post-translationally to direct light-harvesting chlorophyll-binding proteins (LHCPs) to the receptor cpFtsY at the thylakoid membrane for LHCP insertion in a process involving the integral membrane protein Albino3 (Alb3) and requiring GTP. Work here focuses on understanding cpSRP targeting events at the thylakoid membrane, specifically those involving Alb3 and the lipid environment.

We show an interaction between the novel cpSRP subunit cpSRP43 and the soluble, stromal-exposed C terminus of Albino3 (Alb3-Cterm). We …

Viola Pratincola Greene, W. E. Mcclain

Specimens by Name

No abstract provided.

Dodecatheon Meadia L., W. E. Mcclain

Specimens by Name

No abstract provided.

Viola Pratincola Greene, W. E. Mcclain

Specimens by Name

No abstract provided.

Viola Pratincola Greene, John E. Ebinger

Specimens by Name

No abstract provided.

Viola Pedata L., John E. Ebinger

Specimens by Name

No abstract provided.

Claytonia Virginica L., John E. Ebinger

Specimens by Name

No abstract provided.

Traversing Swanton Road, 5th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Screening Synteny Blocks In Pairwise Genome Comparisons Through Integer Programming, Haibao Tang, Eric Lyons, Brent S. Pedersen, James C. Schnable, Andrew H. Paterson, Michael Freeling

Department of Agronomy and Horticulture: Faculty Publications

Background:

It is difficult to accurately interpret chromosomal correspondences such as true orthology and paralogy due to significant divergence of genomes from a common ancestor. Analyses are particularly problematic among lineages that have repeatedly experienced whole genome duplication (WGD) events. To compare multiple “subgenomes” derived from genome duplications, we need to relax the traditional requirements of “one-to-one” syntenic matchings of genomic regions in order to reflect “one-to-many” or more generally “many-to-many” matchings. However this relaxation may result in the identification of synteny blocks that are derived from ancient shared WGDs that are not of interest. For many downstream analyses, we …

Arctic Mustard Flower Color Polymorphism Controlled By Petal-Specific Downregulation At The Threshold Of The Anthocyanin Biosynthetic Pathway, Cynthia A. Dick, Jason Buenrostro, Timothy Butler, Matthew L. Carlson, Daniel J. Kliebenstein, Justen B. Whittall

Biology

Intra- and interspecific variation in flower color is a hallmark of angiosperm diversity. The evolutionary forces underlying the variety of flower colors can be nearly as diverse as the colors themselves. In addition to pollinator preferences, non-pollinator agents of selection can have a major influence on the evolution of flower color polymorphisms, especially when the pigments in question are also expressed in vegetative tissues. In such cases, identifying the target(s) of selection starts with determining the biochemical and molecular basis for the flower color variation and examining any pleiotropic effects manifested in vegetative tissues. Herein, we describe a widespread purple-white …

Viola Sororia Willd., W. E. Mcclain

Specimens by Name

No abstract provided.

Section Abstracts: Botany

Virginia Journal of Science

Abstracts of the Botany Section for the 89th Annual Meeting of the Virginia Academy of Science, May 25-27, 2011. University of Richmond, Richmond VA.

Sedges: Carex, Robert H. Mohlenbrock

Illustrated Flora of Illinois

Sedges: Carex is the fourteenth volume of The Illustrated Flora of Illinois series and the sixth and last volume devoted to monocots-plants that have a single seed leaf, or cotyledon, upon germination.

Since the volume's original publication in 1999, thirty-four additional species of plants have been recognized in Illinois. Some are discoveries from recent field work, some are from more thorough searches of herbaria, and others are from different taxonomic philosophies.

For each species of Carex in Illinois, there is a full illustration showing the habit of the plant and close-ups of various vegetative and reproductive structures that are crucial …

Review Of Pieces Of The Plains: Memories And Predictions From The Heart Of America. By John Janovy, Jr., Mark Hammer

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

John Janovy, Jr., author, parasitologist, and Varner Professor of Biological Sciences at the University ofNebraska- Lincoln, describes his book as "sort of a memoir, but one in which experience is the main character, instead of the writer." Janovy divides this experience into three sections describing his past, his present, and humanity's future.

Janovy the teacher is never far from each chapter's storyline. Describing his central theme as "education in the broadest sense, a constant learning derived from exploration of things and places," he sets out in the book's pages to engage in a discussion of big ideas just as he …

Review Of 620 Wild Plants Of North America: Fully Illustrated. By Tom Reaume., Mark J. Leoschke

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

Beautifully and profusely illustrated with the author's black-and-white drawings, the 12-year project that became this book shows his love for plants. Tom Reaume focuses on a representative selection of primarily native vascular plants of the Great Plains of Canada and the northern United States found in forests, lakes, prairies, rivers, and wetlands. The book appears to be designed as a supplement for an introductory course in plant taxonomy.

This book is a useful reference for those interested in the flora of the northern Great Plains and adjacent regions. I highly recommend it for college and university libraries where botany and …

Review Of The Tallgrass Prairie Center Guide To Seed And Seedling Identification In The Upper Midwest. By Dave Williams., H. L. Hillhouse

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

This book will please both practitioners of prairie restoration and more general prairie enthusiasts. It includes 72 grass and forb species, and the focus is clearly on species often found in tallgrass prairie plantings in the upper Midwest. The grasses and forbs are presented separately here, and for each group a morphological key is provided to divide the species into "Key Characteristic Groups." Because these groups are based on morphological similarity, species within a group are often-but not always-closely related.

Short and highly portable, the book covers the most common species in plantings. The only thing that would have delighted …

Sfa Gardens Newsletter, Spring 2011, Sfa Gardens, Stephen F. Austin State University

SFA Gardens Newsletters

No abstract provided.

Mojave Applied Ecology Notes Spring 2011, Scott R. Abella, Ross Guida, S. D. Smith, Christopher L. Roberts, Haroon Stephen, William J. Smith, Zhongwei Liu, James S. Holland, Aurore Giguet

Mojave Applied Ecology Notes

Red brome distribution in the eastern Mojave Desert, A look at the UNLV xeric gardens and Marjorie Barrick museum, Summary of recent science synthesis efforts

A First Insight Into Population Structure And Linkage Disequilibrium In The U.S. Peanut Minicore Collection, Vikas Belamkar, Michael Gomez Selvaraj, Jamie L. Ayers, Paxton R. Payton, Naveen Puppala, Mark D. Burow

Department of Agronomy and Horticulture: Faculty Publications

Knowledge of genetic diversity, population structure, and degree of linkage disequilibrium (LD) in target association mapping populations is of great importance and is a prerequisite for LD-based mapping. In the present study, 96 genotypes comprising 92 accessions of the US peanut minicore collection, a component line of the tetraploid variety Florunner, diploid progenitors A. duranensis (AA) and A. ipaënsis (BB), and synthetic amphidiploid accession TxAG-6 were investigated with 392 simple sequence repeat (SSR) marker bands amplified using 32 highly-polymorphic SSR primer pairs. Both distance- and model-based (Bayesian) cluster analysis revealed the presence of structured diversity. In general, the wild-species accessions …

Genes Identified By Visible Mutant Phenotypes Show Increased Bias Toward One Of Two Subgenomes Of Maize, James C. Schnable, Michael Freeling

Department of Agronomy and Horticulture: Faculty Publications

Not all genes are created equal. Despite being supported by sequence conservation and expression data, knockout homozygotes of many genes show no visible effects, at least under laboratory conditions. We have identified a set of maize (Zea mays L.) genes which have been the subject of a disproportionate share of publications recorded at MaizeGDB. We manually anchored these ‘‘classical’’ maize genes to gene models in the B73 reference genome, and identified syntenic orthologs in other grass genomes. In addition to proofing the most recent version 2 maize gene models, we show that a subset of these genes, those that …

Dose–Sensitivity, Conserved Non-Coding Sequences, And Duplicate Gene Retention Through Multiple Tetraploidies In The Grasses, James C. Schnable, Brent S. Pedersen, Sabarinath Subramaniam, Michael Freeling

Department of Agronomy and Horticulture: Faculty Publications

Whole genome duplications, or tetraploidies, are an important source of increased gene content. Following whole genome duplication, duplicate copies of many genes are lost from the genome. This loss of genes is biased both in the classes of genes deleted and the subgenome from which they are lost. Many or all classes are genes preferentially retained as duplicate copies are engaged in dose sensitive protein–protein interactions, such that deletion of any one duplicate upsets the status quo of subunit concentrations, and presumably lowers fitness as a result. Transcription factors are also preferentially retained following every whole genome duplications studied. This …

Phylogenetic Evaluation Of Series Delimitations In Section Palmata (Acer, Aceroideae, Sapindaceae) Based On Sequences Of Nuclear And Chloroplast Genes, Jianhua Li

Aliso: A Journal of Systematic and Floristic Botany

Acer section Palmata (Japanese maples) is the largest section within the genus; however, series delimitations within section Palmata have not been evaluated in a phylogenetic context. Both maximum parsimony and maximum likelihood analyses of DNA sequence data of nuclear rDNA ITS and chloroplast genes (ndhF, trnL-trnF, and psbA-trnH) from 23 species of Acer section Palmata show that traditional series do not form individual clades. Results from this study support the most recent taxonomic treatment of Acer that does not recognize any series in section Palmata. Nuclear and chloroplast phylogenies are significantly …

Wood Anatomy Of Family Salvadoraceae From The Indian Subcontinent With Special Reference To The Ultrastructure Of The Vessel Wall, Vishakha Saxena, Sangeeta Gupta

Aliso: A Journal of Systematic and Floristic Botany

The present study describes the wood microstructure of Azima tetracantha, Salvadora oleoides, and S. persica, the members of family Salvadoraceae represented in the Indian Subcontinent. An identification key based on wood anatomical features has been developed for the separation of the species. SEM studies revealed the presence of vesturing in intervessel pits of Salvadora.

Cover Page

Aliso: A Journal of Systematic and Floristic Botany

No abstract provided.

Sinker Structure Of Phoradendron Californicum (Viscaceae) Confounds Its Presumed Close Relationship To Other Acataphyllous Species, Rudolf Schmid, Clyde L. Calvin, Carol A. Wilson

Aliso: A Journal of Systematic and Floristic Botany

Phoradendron is the largest genus of New World mistletoes, with about 250 species in two subgenera, Boreales and Aequatoriales, corresponding, respectively, to northern acataphyllous and southern cataphyllous groups. The typically acataphyllous P. californicum of western North America is controversial because recent phylogenetic work has nested it in the southern cataphyllous clade. Seedling establishment, stem anatomy, and endophytic system structure of this species were studied. Seedling haustorial holdfasts have gland cavities, structures considered absent in the Viscaceae clade of Santalales. The stem epidermis has a thick cuticle, deeply sunken stomata, and branched multicellular trichomes. The stem has an outer cortex …

Ponderosa Pine Revisited, J. Robert Haller, Nancy J. Vivrette

Aliso: A Journal of Systematic and Floristic Botany

We here recognize a new variety, Pinus ponderosa var. pacifica, in the Pacific portion of the species' distribution and present a new combination for Washoe pine as a variety, Pinus ponderosa var. washoensis. In this treatment, we reject the neotype of Pinus ponderosa selected by Lauria and designate instead the branch collected by David Douglas with mistletoe (Arceuthobium campylopodum) as lectotype for Pinus ponderosa. Table 1 compares the distinguishing characters of the North Plateau (typical) variety, the Pacific variety, and the Washoe variety of Pinus ponderosa with a closely related species, Pinus jeffreyi. Figure …

Nomenclatural Changes For Some Grasses In California. Ii., James P. Smith Jr., J. Travis Columbus

Aliso: A Journal of Systematic and Floristic Botany

Two additional nomenclatural changes are required for Poaceae treatments that will appear in the second edition of The Jepson Manual: Higher Plants of California. They are Elymus x gouldii and Festuca temulenta. The former corrects a violation of the rule in the International Code of Botanical Nomenclature involving the naming of hybrids, and the latter involves a widely occurring non-native grass in California traditionally assigned to Lolium.

Plants Of The Colonet Region, Baja California, Mexico, And A Vegetation Map Of Colonet Mesa, Alan B. Harper, Sula Vanderplank, Mark Dodero, Sergio Mata, Jorge Ochoa

Aliso: A Journal of Systematic and Floristic Botany

The Colonet region is located at the southern end of the California Floristic Province, in an area known to have the highest plant diversity in Baja California. A preliminary list of vouchered specimens is developed for the area, and a vegetation map for Colonet Mesa is presented. The Colonet region has at least 435 vascular plant taxa, of which 383 are native to Baja California, and 52 are endemic or nearly endemic. This list includes five local endemic taxa known only from the Colonet region, 18 taxa on the California Native Plant Society List 1B of taxa that are "rare, …

Distribution And Regional Ecology Of Californian Palm Oases Interpreted From Google Earth Images, Richard A. Minnich, Ernesto Franco-Vizcaíno, Mario Salazar-Ceseña

Aliso: A Journal of Systematic and Floristic Botany

The native fan palms of the Baja California peninsula (Mexico) and neighboring southern California (USA) comprise two species each in Washingtonia and Brahea. While these are among the most familiar ornamental palms in the world, many features of their taxonomy, distribution, and environmental relationships remain unresolved. We utilized Google Earth Digital Globe imagery (and limited surveys by air and land) to develop the first map detailing the geographic distribution of palm populations in the Peninsular Range Province (PRP) and used these data to formulate new hypotheses on their biotic and abiotic relationships. We inventoried 15,216 populations covering an area …

Traversing Swanton Road, 4th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …