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Articles 61 - 90 of 218
Full-Text Articles in Agronomy and Crop Sciences
The Role Of The Auxin Biosynthesis And Signaling In Soybean Root Nodule Development, Mucahid Bozkus
The Role Of The Auxin Biosynthesis And Signaling In Soybean Root Nodule Development, Mucahid Bozkus
Electronic Theses and Dissertations
Nitrogen(N) is one of the most important plant nutrients for plant growth and yield, however, its abundance in the soil is not sufficient for profitable crop production. The use of chemical fertilizers helps address soil N deficiency in agriculture. However, due to the environmental pollution resulting from excessive use of fertilizers, alternative forms of N for agriculture are a necessity. Leguminous plants such as soybean (Glycine max) form a symbiotic association with N-fixing rhizobia to meet their N demands. Legume-rhizobia symbiosis results in the formation of unique structures called nodules where rhizobia convert atmospheric nitrogen into plant usable forms, thus …
Development Of Mping-Based Activation Tags For Crop Insertional Mutagenesis, Alexander Johnson, Edward Mcassey, Stephanie Diaz, Jacod Reagin, Priscilla S. Redd, Daymond R. Parrilla, Hanh Nguyen, Adrian Stec, Lauren A.L. Mcdaniel, Thomas E. Clemente, Robert M. Stupar, Wayne A. Parrott, C. Nathan Hancock
Development Of Mping-Based Activation Tags For Crop Insertional Mutagenesis, Alexander Johnson, Edward Mcassey, Stephanie Diaz, Jacod Reagin, Priscilla S. Redd, Daymond R. Parrilla, Hanh Nguyen, Adrian Stec, Lauren A.L. Mcdaniel, Thomas E. Clemente, Robert M. Stupar, Wayne A. Parrott, C. Nathan Hancock
Department of Agronomy and Horticulture: Faculty Publications
Modern plant breeding increasingly relies on genomic information to guide crop im- provement. Although some genes are characterized, additional tools are needed to effectively identify and characterize genes associated with crop traits. To address this need, the mPing element from rice was modified to serve as an activation tag to in- duce expression of nearby genes. Embedding promoter sequences in mPing resulted in a decrease in overall transposition rate; however, this effect was negated by using a hyperactive version of mPing called mmPing20. Transgenic soybean events carrying mPing-based activation tags and the appropriate transposase expression cassettes showed evidence of transposition. …
Arkansas Soybean Performance Tests 2020, J. F. Carlin, R. D. Bond, R. B. Morgan
Arkansas Soybean Performance Tests 2020, J. F. Carlin, R. D. Bond, R. B. Morgan
Arkansas Agricultural Experiment Station Research Series
Soybean variety and strain performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture’s Arkansas Crop Variety Improvement Program. The tests provide information to companies developing varieties and/or marketing seed within the State, and aid the Arkansas Cooperative Extension Service in formulating variety recommendations for soybean producers.
Development Of Mping-Based Activation Tags For Crop Insertional Mutagenesis, Alexander Johnson, Edward Mcassey, Stephanie Diaz, Jacob Reagin, Priscilla S. Redd, Daymond R. Parrilla, Hanh T. Nguyen, Adrian Stec, Lauren A.L. Mcdaniel, Thomas E. Clemente, Robert M. Stupar, Wayne A. Parrott, C Nathan Hancock
Development Of Mping-Based Activation Tags For Crop Insertional Mutagenesis, Alexander Johnson, Edward Mcassey, Stephanie Diaz, Jacob Reagin, Priscilla S. Redd, Daymond R. Parrilla, Hanh T. Nguyen, Adrian Stec, Lauren A.L. Mcdaniel, Thomas E. Clemente, Robert M. Stupar, Wayne A. Parrott, C Nathan Hancock
Department of Agronomy and Horticulture: Faculty Publications
Modern plant breeding increasingly relies on genomic information to guide crop improvement. Although some genes are characterized, additional tools are needed to effectively identify and characterize genes associated with crop traits. To address this need, the mPing element from rice was modified to serve as an activation tag to induce expression of nearby genes. Embedding promoter sequences in mPing resulted in a decrease in overall transposition rate; however, this effect was negated by using a hyperactive version of mPing called mmPing20. Transgenic soybean events carrying mPing-based activation tags and the appropriate transposase expression cassettes showed evidence of transposition. Expression analysis …
Association Mapping For Soybean (Glycine Max L. Merr.) Protein And Oil Content, Joseph Najjar
Association Mapping For Soybean (Glycine Max L. Merr.) Protein And Oil Content, Joseph Najjar
Graduate Theses and Dissertations
Soybean [Glycine Max (L.) Merrill] is an important economic crop because of its high content of seed protein and oil. Seed oil and protein content are quantitative inherited traits. The genetics of seed protein and oil levels have been extensively studied, with 367 QTL reported for protein and 475 QTL reported for oil to date. Validation of such QTLs, and identification of easily-automatable molecular markers around these QTL will aid the progression of breeding for such traits. The focus of this research was to discover novel and verify previously reported QTL related to protein and/or oil content via Genome-Wide Association …
Arkansas Soybean Research Studies 2019, Jeremy Ross
Arkansas Soybean Research Studies 2019, Jeremy Ross
Arkansas Agricultural Experiment Station Research Series
The 2019 Arkansas Soybean Research Studies includes research reports on topics pertaining to soybean across several disciplines, from breeding to post-harvest processing. Research reports contained in this publication may represent preliminary or only a data set from a single year or limited results; therefore, these results should not be used as a basis for long-term recommendations. Several research reports in this publication will appear in other University of Arkansas System Division of Agriculture’s Arkansas Agricultural Experiment Station publications. This duplication is the result of the overlap in research coverage between disciplines and our effort to inform Arkansas soybean producers of …
Evaluasi Galur-Galur Mutan Kedelai Berdasarkan Daya Hasil Dan Ukuran Biji Di Jatinangor, Sumedang, Jawa Barat, Andrew Yoel, Meddy Rachmadi
Evaluasi Galur-Galur Mutan Kedelai Berdasarkan Daya Hasil Dan Ukuran Biji Di Jatinangor, Sumedang, Jawa Barat, Andrew Yoel, Meddy Rachmadi
Jurnal Kultivasi
Usaha pemuliaan tanaman kedelai saat ini sebagian besar berfokus pada identifikasi genotipe dengan hasil biji yang tinggi dan ukuran biji besar. Tujuan dari penelitian ini adalah untuk mengevaluasi kultivar kedelai dan kedelai mutan untuk daya hasil tinggi dan ukuran biji besar. Penelitian ini dilaksanakan dari September 2017 sampai Januari 2018 di Kebun percobaan Ciparanje Fakultas Pertanian UNP AD, Jatinangor, Jawa Barat. Rancangan percobaan yang digunakan adalah Rancangan Acak Kelompok (RAK) yang terdiri dari 20 perlakuan dalam 2 ulangan. Perlakuan terdiri dari 19 genotipe dan 1 kultivar cek. Data dianalisis Sidik Ragam dengan Uji F 5%, nilai beda dengan Uji Dunnet …
Pengaruh Kombinasi Jamur Trichoderma Harzianum Dan Bokashi Terhadap Pertumbuhan Tiga Kultivar Kedelai, Rosiman, Sumadi, Meddy Rachmadi
Pengaruh Kombinasi Jamur Trichoderma Harzianum Dan Bokashi Terhadap Pertumbuhan Tiga Kultivar Kedelai, Rosiman, Sumadi, Meddy Rachmadi
Jurnal Kultivasi
Pupuk Bokashi dapat meningkatkan kesuburan tanah melalui pembentukan agregat tanah sehingga dapat memperbaiki struktur tanah. Penambahan Trichoderna harzianum pada bokashi dapat mempercepat proses dekomposisi, menjaga kesuburan media, dan meningkatkan pertumbuhan tanaman. Penelitian ini bertujuan untuk menguji kombinasi Trichoderma harzianum dan pupuk bokashi untuk meningkatkan pertumbuhan dan hasil tiga kultivar kedelai. Penelitian dilakukan dengan menggunakan Rancangan Acak Kelompok (RAK) pada dua faktor terhadap tiga kultivar kedelai (Ringgit, Wilis, dan Anjasmoro) dengan kombinasi Trichoderma harzianum dan Bokashi 0 t/ha, 5 t/ha, 10 t/ha, dan 15 t/ha. Hasil penelitian ini menunjukkan bahwa efektivitas kombinasi Trichoderma harzianum dan bokashi pada pertumbuhan dan hasil tergantung …
Sensitivity Of Enlisttm And Roundup Ready Xtend® Technologies To Auxin Herbicides And Comparison Of Resistance To Susceptible Cotton And Soybean Cultivars, James Rose
Graduate Theses and Dissertations
Increases in weed resistance have led to the development of new herbicide-resistant crop technologies, namely the Roundup Ready Xtend® and EnlistTM weed control systems. These new technologies provide resistance to applications of the synthetic auxins dicamba or 2,4-D, respectively, in traited cotton or soybean. It is unknown if there is any resistance to other herbicides within the synthetic auxin group (WSSA Group 4) in these traited crops. Experiments were conducted with auxin herbicides representing all five families within WSSA Group 4. Herbicides were applied either preemergence (PRE) or postemergence (POST) relative to the crop in a single application. Applications were …
Genetics Of Physiological Traits Associated With Drought Tolerance In Soybean (Glycine Max), Sumandeep Kaur Bazzer
Genetics Of Physiological Traits Associated With Drought Tolerance In Soybean (Glycine Max), Sumandeep Kaur Bazzer
Graduate Theses and Dissertations
Soybean (Glycine max L.) is one of the major row crops in the United States, and its production is often limited by drought stress. Physiological traits from exotic germplasm that confer drought tolerance may be useful in improving commercial soybean production. For example, carbon isotope ratio (δ13C) is positively correlated with water use efficiency (WUE), and nitrogen isotope ratio (δ15N) is negatively correlated with N2 fixation; canopy temperature (CT) is an indicator for genetic variation in transpiration and stomatal conductance. Therefore, the objectives of this research were to identify the genomic regions associated with: (1) δ13C and δ15N using a …
Developing A High-Throughput Method To Screen Soybean Germplasm For Hypoxia Tolerance In Hydroponic Systems, Derrick Harrison
Developing A High-Throughput Method To Screen Soybean Germplasm For Hypoxia Tolerance In Hydroponic Systems, Derrick Harrison
Graduate Theses and Dissertations
Soybean [Glycine max (Merr.)], the second most planted crop in the United States, is sensitive to field flooding due to depletion of oxygen and accumulation of CO2 in the rhizosphere. There is a need to breed cultivars that are adapted to areas prone to flooding, but field evaluations in the U.S. are limited because of time (one generation per year) and availability of resources (impermeable soils, irrigation, equipment to build levees). The purpose of this study was to develop and execute a protocol of germplasm screening for hypoxia tolerance using hydroponics in a controlled greenhouse environment. Germination rates and vigor …
Cover Cropping In Soybean-Corn Rotation System: Economic, Agronomic, And Soil Fertility Impact, Jose Rodolfo Mite
Cover Cropping In Soybean-Corn Rotation System: Economic, Agronomic, And Soil Fertility Impact, Jose Rodolfo Mite
LSU Doctoral Dissertations
Planting winter-annual cover crops prevent soil erosion, reduces water runoff, and improves soil structure and soil quality. This research was conducted from 2017 to 2019 to evaluate the nutrient turnover of different species of cover crops in soils under different row crop production systems in Northeast and Central Louisiana. In Northeast Louisiana (Site 1, 2, and 3), treatments (cover crops and no cover crop) were arranged in a strip trial with three replications. At the Ben Hur Research Station, the treatments included three planting dates (September, October, and November) with [7 kg ha-1 of phosphorus (P) and potassium (K)] …
Assessing Approaches For Stratifying Producer Fields Based On Biophysical Attributes For Regional Yield-Gap Analysis, Spyridon Mourtzinis, Patricio Grassini, Juan I. Rattalino Edreira, José F. Andrade, Peter M. Kyveryga, Shawn P. Conley
Assessing Approaches For Stratifying Producer Fields Based On Biophysical Attributes For Regional Yield-Gap Analysis, Spyridon Mourtzinis, Patricio Grassini, Juan I. Rattalino Edreira, José F. Andrade, Peter M. Kyveryga, Shawn P. Conley
Department of Agronomy and Horticulture: Faculty Publications
Large databases containing producer field-level yield and management records can be used to identify causes of yield gaps. A relevant question is how to account for the diverse biophysical background (i.e., climate and soil) across fields and years, which can confound the effect of a given management practice on yield. Here we evaluated two approaches to group producer fields based on biophysical attributes: (i) a technology extrapolation domain spatial framework (‘TEDs’) that delineates regions with similar (long-term average) annual weather and soil water storage capacity and (ii) clusters based on field-specific soil properties and weather during each crop …
Soybean Response To Water: Trait Identification And Prediction, Shawn Jenkins
Soybean Response To Water: Trait Identification And Prediction, Shawn Jenkins
Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research
The rising demand for soybean [Glycine Max (L.) Merrill] taken in consideration with current climatic trends accentuates the importance of improving soybean seed yield response per unit water (WP). To further our understanding of the quantitative WP trait, a multi-omic approach was implemented for improved trait identification and predictive modeling opportunities. Through the evaluation of two recombinant inbred line populations jointly totaling 439 lines subjected to contrasting irrigation treatments, informative agronomic, phenomic, and genomic associations were identified. Across both populations, relationships were identified between lodging at maturity (r = -0.58, H = 0.86), canopy to air temperature differential …
In-Season Crop Management Effect On Soybean Yield And Grain Quality In Eastern South Dakota, Kelsey Bergman
In-Season Crop Management Effect On Soybean Yield And Grain Quality In Eastern South Dakota, Kelsey Bergman
Electronic Theses and Dissertations
Soybean [Glycine max (L.) Merr.] yield has increased over time by introduction of newer varieties and improved agronomic practices. However, grain protein concentration has been decreasing at the same time. New field studies in 2018 and 2019 investigated inseason crop management practices effect such as use of foliar protection application, fertilizer application, different maturity length or different planting dates on grain yield and grain quality. The studies were established near Brookings, SD and Beresford, SD. In-season treatments were targeting nutrient availability or protecting soybean canopy during the grain filling period. Such treatments included the use of fungicide, insecticide, or supplying …
Insufficient Nitrogen Supply From Symbiotic Fixation Reduces Seasonal Crop Growth And Nitrogen Mobilization To Seed In Highly Productive Soybean Crops, Nicolas Cafaro La Menza, Juan Pablo Monzon, John L. Lindquist, Timothy J. Arkebauer, Johannes M.H. Knops, Murray Unkovich, James E. Specht, Patricio Grassini
Insufficient Nitrogen Supply From Symbiotic Fixation Reduces Seasonal Crop Growth And Nitrogen Mobilization To Seed In Highly Productive Soybean Crops, Nicolas Cafaro La Menza, Juan Pablo Monzon, John L. Lindquist, Timothy J. Arkebauer, Johannes M.H. Knops, Murray Unkovich, James E. Specht, Patricio Grassini
Department of Agronomy and Horticulture: Faculty Publications
Nitrogen (N) supply can limit the yields of soybean [Glycine max (L.) Merr.] in highly productive environments. To explore the physiological mechanisms underlying this limitation, seasonal changes in N dynamics, aboveground dry matter (ADM) accumula- tion, leaf area index (LAI) and fraction of absorbed radiation (fAPAR) were compared in crops relying only on biological N2 fixation and available soil N (zero-N treatment) versus crops receiving N fertilizer (full-N treatment). Experiments were conducted in seven high-yield environments without water limitation, where crops received optimal management. In the zero-N treatment, biological N2 fixation was not sufficient to meet the N demand of …
The Effects Of Seed-Applied Fluopyram On Root Penetration And Development Of Meloidogyne Incognita On Cotton And Soybean, Tracy Hawk
Graduate Theses and Dissertations
Plant-parasitic nematodes are major pests of cotton and soybean in Arkansas, and across the Southern United States. These nematodes cause more than $3 billion worth of crop losses each year, in part due to lack of available control tactics, such as nematicides. Fluopyram has recently been registered as a seed-treatment nematicide in agronomic crops. The toxicity of fluopyram against Meloidogyne incognita infection has been reported, however, information on root protection provided by fluopyram against Meloidogyne incognita is lacking. The first objective of this research was to evaluate the effect seed-applied fluopyram had on nematode development, root galling, and reproduction on …
Mitigating Herbicide Impacts To Soybean, Grant Lawson Priess
Mitigating Herbicide Impacts To Soybean, Grant Lawson Priess
Graduate Theses and Dissertations
The rapidity in evolution of herbicide-resistant weeds and the resulting cost to U.S. farmers demonstrate the need to responsibly steward the limited number of herbicides available in agricultural systems. To reduce weed emergence and likewise added selection pressures placed on herbicides, early-season crop canopy formation has been promoted. However, impacts to soybean following a potentially injurious herbicide application have not been thoroughly evaluated. Therefore, field experiments were conducted to determine whether: 1) soybean injury from metribuzin or flumioxazin delayed canopy formation or changed the incidence of pathogen colonization; 2) residual herbicides applied preplant reduced the potential for soybean injury and …
Arkansas Soybean Performance Tests 2019, J. F. Carlin, R. D. Bond, J. A. Still
Arkansas Soybean Performance Tests 2019, J. F. Carlin, R. D. Bond, J. A. Still
Arkansas Agricultural Experiment Station Research Series
Soybean variety and strain performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture’s Arkansas Crop Variety Improvement Program. The tests provide information to companies developing varieties and/or marketing seed within the State, and aid the Arkansas Cooperative Extension Service in formulating variety recommendations for soybean producers.
Integration Of Cover Crops Into Midwest Corn-Soybean Cropping Systems And Potential For Weed Suppression, Joshua S. Wehrbein
Integration Of Cover Crops Into Midwest Corn-Soybean Cropping Systems And Potential For Weed Suppression, Joshua S. Wehrbein
Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research
Cover crops have potential to provide benefits to agricultural systems, such as improved soil productivity, nutrient scavenging, weed suppression, and livestock forage. There are several challenges associated with cover crop integration into traditional Midwest corn-soybean cropping systems. One of these challenges is timely establishment in the fall, which is limited by the relatively late harvest of corn and soybean. Cover crop effectiveness is related to the amount of biomass produced, thus maximizing the growth period in the fall is desired. To address this challenge, we evaluated the potential to utilize early-season soybean maturity groups (MGs) to allow for earlier soybean …
Improving The Efficiency Of Soybean Breeding With High-Throughput Canopy Phenotyping, Fabiana Freitas Moreira, Anthony Ahau Hearst, Keith Aric Cherkauer, Katy Martin Rainey
Improving The Efficiency Of Soybean Breeding With High-Throughput Canopy Phenotyping, Fabiana Freitas Moreira, Anthony Ahau Hearst, Keith Aric Cherkauer, Katy Martin Rainey
Purdue University Libraries Open Access Publishing Fund
Background: In the early stages of plant breeding programs high-quality phenotypes are still a constraint to improve genetic gain. New field-based high-throughput phenotyping (HTP) platforms have the capacity to rapidly assess thousands of plots in a field with high spatial and temporal resolution, with the potential to measure secondary traits correlated to yield throughout the growing season. These secondary traits may be key to select more time and most efficiently soybean lines with high yield potential. Soybean average canopy coverage (ACC), measured by unmanned aerial systems (UAS), is highly heritable, with a high genetic correlation with yield. The objective of …
Evaluation Of Soil Type And Seeding Rate On Winter Cover Crop Species In A Soybean Production System, Donna S. Morgan
Evaluation Of Soil Type And Seeding Rate On Winter Cover Crop Species In A Soybean Production System, Donna S. Morgan
LSU Doctoral Dissertations
The integration of winter annual cover crops into a cropping system can potentially improve soil health and crop production, however, the impact of variables such as seeding rates, across two very different soil types, has not been well documented. A two-year study was conducted at the Dean Lee Research Station and Extension Center in Alexandria, Louisiana to evaluate the effects of cover crop seeding rate and soil type on cover crop biomass, weed suppression, soil fertility, and soybean (Glycine max L) growth and yield. Analysis of potential economic impacts was also performed to estimate financial net returns for three …
Understanding Nitrogen Limitation In Soybean, Nicolas Cafaro La Menza
Understanding Nitrogen Limitation In Soybean, Nicolas Cafaro La Menza
Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research
Meeting soybean demand on existing cropland area for a global population of 9.7 billion people by the year 2050 requires narrowing the existing gap between average producer yield and yield potential. Soybean relies on two sources on nitrogen (N): biological N2 fixation and indigenous soil N supply. As soybean yield continues to increase, it seems critical to know if there is a yield level at which potential contribution of indigenous nitrogen sources and fixation becomes insufficient to meet crop N requirements for high yields, while still maintaining or increasing protein and oil concentration. This study evaluated N limitation across …
Respons Kedelai Akibat Jarak Tanam Dan Konsentrasi Giberelin Pada Tanah Inceptisol Jatinangor, Aep Wawan Irwan, Agus Wahyudin, Toto Sunarto
Respons Kedelai Akibat Jarak Tanam Dan Konsentrasi Giberelin Pada Tanah Inceptisol Jatinangor, Aep Wawan Irwan, Agus Wahyudin, Toto Sunarto
Jurnal Kultivasi
Teknik budidaya untuk meningkatkan produktivitas kedelai antara lain penggunaan jarak tanam yang tepat dan penambahan input berupa giberelin. Penelitian ini bertujuan untuk memperoleh jarak tanam dan konsentrasi yang tepat agar pertumbuhan dan hasil meningkat. Percobaan dilakukan pada bulan Juli sampai Oktober 2017 di Kebun Percobaan Ciparanje, Fakultas Pertanian Universitas Padjadjaran, dengan ketinggian tempat yaitu ± 780 meter di atas permukaan laut. Percobaan dilakukan dengan menggunakan Rancangan Acak Kelompok pola faktorial, dengan tiga ulangan. Faktor I adalah jarak tanam, terdiri dari 3 taraf, yaitu: jarak tanam 25 cm X 25 cm, jarak tanam 15 cm X 15 cm X 40 cm …
Studies On Pathogenesis Of The Diseases Caused By Macrophomina Phaseolina And Phomopsis Longicolla On Soybean, Marcio Leizer Zaccaron
Studies On Pathogenesis Of The Diseases Caused By Macrophomina Phaseolina And Phomopsis Longicolla On Soybean, Marcio Leizer Zaccaron
Graduate Theses and Dissertations
Soybean (Glycine max), a legume, is an economically important crop in many parts of the world, including the USA, Brazil, Argentina, China, and India, currently the top five producing countries. Soybean is primarily used as feed, with incising markets for food and biodiesel. Similar to most crops, soybean yield and quality are affected by a diverse group of plant pathogens. In particular, several species of filamentous fungi have been the cause of severe yield losses in most growing regions world-wide. The soil born fungus Macrophomina phaseolina, causal agent of charcoal rot, has been found to be endemic to several soybean …
Effect Of Soil-Applied Protoporphyrinogen Oxidase Inhibitor Herbicides On Soybean Seedling Disease, Nicholas J. Arneson
Effect Of Soil-Applied Protoporphyrinogen Oxidase Inhibitor Herbicides On Soybean Seedling Disease, Nicholas J. Arneson
Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research
Seedling disease is one the most economically important diseases of soybean in the United States. It is commonly caused by Fusarium spp., Rhizoctonia solani, Pythium spp., and Phytophthora sojae, alone, or together as a disease complex. Fungicide seed treatments continue to provide the most consistent management of seedling diseases. Soil-applied protoporphyrinogen oxidase (PPO) inhibitor herbicides are used preemergence in soybean production to manage several broadleaf weeds. Applications of PPO-inhibitors can result in phytotoxic injury to soybean when environmental conditions are not favorable for soybean growth. These environmental conditions can favor seedling disease development as well. In this thesis, two …
Response Surface Analysis Of Genomic Prediction Accuracy Values Using Quality Control Covariates In Soybean, Diego Jarquin, Reka Howard, George L. Graef, Aaron Lorenz
Response Surface Analysis Of Genomic Prediction Accuracy Values Using Quality Control Covariates In Soybean, Diego Jarquin, Reka Howard, George L. Graef, Aaron Lorenz
Department of Agronomy and Horticulture: Faculty Publications
An important and broadly used tool for selection purposes and to increase yield and genetic gain in plant breeding programs is genomic prediction (GP). Genomic prediction is a technique where molecular marker information and phenotypic data are used to predict the phenotype (eg, yield) of individuals for which only marker data are available. Higher prediction accuracy can be achieved not only by using efficient models but also by using quality molecular marker and phenotypic data. The steps of a typical quality control (QC) of marker data include the elimination of markers with certain level of minor allele frequency (MAF) and …
Generating High Density, Low Cost Genotype Data In Soybean [Glycine Max (L.) Merr.], Mary M. Happ, Haichuan Wang, George L. Graef, David L. Hyten
Generating High Density, Low Cost Genotype Data In Soybean [Glycine Max (L.) Merr.], Mary M. Happ, Haichuan Wang, George L. Graef, David L. Hyten
Department of Agronomy and Horticulture: Faculty Publications
Obtaining genome-wide genotype information for millions of SNPs in soybean [Glycine max (L.) Merr.] often involves completely resequencing a line at 5X or greater coverage. Currently, hundreds of soybean lines have been resequenced at high depth levels with their data deposited in the NCBI Short Read Archive. This publicly available dataset may be leveraged as an imputation reference panel in combination with skim (low coverage) sequencing of new soybean genotypes to economically obtain high-density SNP information. Ninety-nine soybean lines resequenced at an average of 17.1X were used to generate a reference panel, with over 10 million SNPs called using …
Species Of Fusarium Causing Root Rot Of Soybean In South Dakota: Characterization, Pathogenicity, And Interaction With Heterodera Glycines, Paul Nyawanda Okello
Species Of Fusarium Causing Root Rot Of Soybean In South Dakota: Characterization, Pathogenicity, And Interaction With Heterodera Glycines, Paul Nyawanda Okello
Electronic Theses and Dissertations
In South Dakota, Fusarium-associated diseases (e.g. seedling diseases, root rot and sudden death syndrome) are emerging threats to soybean production. Several species of Fusarium have been reported to cause these diseases in the soybean producing regions of the United States and in the world. However, little information is available on the species of Fusarium causing soybean root rot in South Dakota and their pathogenicity. Therefore, the objectives of this study were to (1) characterize the species of Fusarium causing soybean root rot in South Dakota; (2) evaluate the cross-pathogenicity of species of Fusarium causing root rot of soybean and corn; …
Cropping Sequence Affects Subsequent Soybean Yield, Soil Microbiome And Soil Health, Izzet Bulbul
Cropping Sequence Affects Subsequent Soybean Yield, Soil Microbiome And Soil Health, Izzet Bulbul
Electronic Theses and Dissertations
Rotation is an important cultural practice that farmers use to manage crop growth and diseases. Diversified crop rotations directly affect plant residue inputs that may enrich specific groups of microbes that form beneficial associations with the following crop. At two field sites, yield differences were observed in soybeans planted after the following four long-term (14 year) crop sequences: continuous corn (CC), corn (Zea mays)/corn/soybean (Glycine max) (CCS), corn/soybean/corn (CSC), soybean/corn/soybean (SCS). Soybean yields were in decreasing order, CC>CCS>CSC>SCS, and the yield differences could not be explained by soil chemical and physical properties previously …