Open Access. Powered by Scholars. Published by Universities.®
- Institution
-
- University of Nebraska - Lincoln (1450)
- Department of Primary Industries and Regional Development, Western Australia (455)
- University of Arkansas, Fayetteville (322)
- South Dakota State University (97)
- University of Kentucky (78)
-
- Western Kentucky University (60)
- University of the Philippines Los Baños (32)
- Utah State University (32)
- Arkansas State University (14)
- California Polytechnic State University, San Luis Obispo (14)
- Purdue University (14)
- Louisiana State University (13)
- Murray State University (11)
- Chapman University (8)
- Mississippi State University (8)
- Tuskegee University (8)
- Illinois State University (7)
- SIT Graduate Institute/SIT Study Abroad (7)
- Clemson University (6)
- Missouri State University (6)
- University of Connecticut (6)
- Brigham Young University (5)
- Extension Journal Inc (5)
- University of Rhode Island (5)
- Tennessee State University (4)
- University of Dar es Salaam (4)
- Claremont Colleges (3)
- West Virginia University (3)
- Cal Poly Humboldt (2)
- Central Washington University (2)
- Keyword
-
- Western Australia (186)
- Wheat (106)
- Soybean (74)
- Yield (70)
- Corn (61)
-
- Maize (56)
- Sorghum (55)
- Nebraska (50)
- Barley (47)
- Rice (47)
- Nitrogen (45)
- Grains and field crops (42)
- Agriculture (41)
- Arkansas (41)
- Weeds (39)
- Irrigation (36)
- INTSORMIL (34)
- Oats (32)
- Crops (30)
- Horticulture (30)
- Biosecurity (29)
- Cotton (29)
- Pests (28)
- Cereals (27)
- Soil (27)
- Winter wheat (27)
- Alfalfa (26)
- Cover crops (26)
- Crop yield (26)
- Diseases (26)
- Publication Year
- Publication
-
- Department of Agronomy and Horticulture: Faculty Publications (1027)
- Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences (160)
- Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research (145)
- Journal of the Department of Agriculture, Western Australia, Series 4 (108)
- Nebraska Agricultural Experiment Station: Historical Research Bulletins (100)
-
- Grains and other field crops factsheets (68)
- Bulletins 4000 - (41)
- Masters Theses & Specialist Projects (41)
- Crop, Soil and Environmental Sciences Faculty Publications and Presentations (40)
- Arkansas Agricultural Experiment Station Research Series (37)
- Electronic Theses and Dissertations (37)
- Graduate Theses and Dissertations (36)
- AAES Research Reports and Research Bulletins (34)
- Biosystems and Agricultural Engineering Faculty Publications (34)
- The Philippine Agricultural Scientist (31)
- PestFacts WA (28)
- Theses and Dissertations--Plant and Soil Sciences (24)
- Nebraska Agricultural Experiment Station: Historical Circulars (22)
- Cornhusker Economics (20)
- All Archived Publications (19)
- Biosecurity factsheets (18)
- Biosecurity published reports (17)
- Agronomy, Horticulture and Plant Science Faculty Publications (16)
- INTSORMIL Presentations (16)
- Biosecurity Research Articles (15)
- Farm Systems and Economics published reports (15)
- Grain and Other Field Crops Research Articles (15)
- INTSORMIL Scientific Publications (15)
- Grain and other field crops published reports (14)
- Student Theses and Dissertations (14)
- Publication Type
- File Type
Articles 91 - 120 of 2726
Full-Text Articles in Agronomy and Crop Sciences
Nebraska Crop Budgets Updated For 2025, Glennis Mcclure
Nebraska Crop Budgets Updated For 2025, Glennis Mcclure
Cornhusker Economics
For the 2025 production season, 83 crop budgets were developed for Nebraska. These budgets show slightly lower per-unit costs compared to 2023 and 2024. The primary factor behind the reduction in input costs is the lower estimated costs of fuel and fertilizer. In most cases, machinery depreciation and opportunity costs remained relatively stable, while land values and rental rates increased slightly. Additionally, seed and interest costs also rose in the 2025 budgets. Budget scenarios for individual producers may vary depending on the timing of their input purchases and fluctuations in prices.
The Nebraska crop budgets are updated annually to serve …
Letter From The Faculty Editor, Beth Kegley
Letter From The Faculty Editor, Beth Kegley
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Adaptation For Whom? Understanding The Impacts Of Dyke Policies On Small-Scale Farmers In Ca Mau Province Of Vietnam, Nguyen Minh Quang, Nguyen Van Minh, Nguyen Vo Chau Ngan, Martha B. Lerski
Adaptation For Whom? Understanding The Impacts Of Dyke Policies On Small-Scale Farmers In Ca Mau Province Of Vietnam, Nguyen Minh Quang, Nguyen Van Minh, Nguyen Vo Chau Ngan, Martha B. Lerski
Publications and Research
Low-lying deltas worldwide are extremely vulnerable to sea-level rise. As the risks of climate-induced flooding become increasingly clear, the thirst for infrastructure-driven adaptation increases. This highlights a patent need to understand the impacts of engineering adaptation solutions, especially those targeting built structures such as dykes and sluices, on farmers from a bottom-up, farmer-centred perspective. The study addresses this call by examining cases where dyke policies, while successful in some dimensions, have undermined small-scale farmer livelihoods in Ca Mau ― Vietnam’s southernmost rural province. It identifies areas in need of attention and adds empirical data related to this group of farmers. …
Contents, Discovery Editors
Contents, Discovery Editors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 26 2025, Several Authors
Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 26 2025, Several Authors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Letter From The Dean, Jeff Edwards
Letter From The Dean, Jeff Edwards
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Featured Faculty Mentor/Student Team, Kelly Loftin, Eva Berryhill
Featured Faculty Mentor/Student Team, Kelly Loftin, Eva Berryhill
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Instructions For Authors, Discovery Editors
Instructions For Authors, Discovery Editors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Introduction To Hydroponics- 2025-2026 Workshop Handbook, Stacy A. Adams
Introduction To Hydroponics- 2025-2026 Workshop Handbook, Stacy A. Adams
Department of Agronomy and Horticulture: Faculty Publications
Hydroponically grown plants grow faster than traditional production systems, with greater productivity, greater palatability, and having optimal visual character. Three principal components of a system include the plant support platform, a nutrient solution reservoir, and an interface for the root-solution. This publication provides in-depth explanation to system design, evaluation of water quality, nutrient formulation, and prototype systems that can be easily constructed for those wanting to explore hydroponics, such as educators, organizational leaders, or home enthusiasts.
An Economic And Production Analysis Of Seaweed Farms In California And The Pacific Northwest, Brian Donovan
An Economic And Production Analysis Of Seaweed Farms In California And The Pacific Northwest, Brian Donovan
Cal Poly Humboldt theses and projects
Since the early 2010s, the seaweed aquaculture industry has steadily expanded in the United States, with states like Alaska, Maine, Hawaii, and Connecticut leading the way in the development of this emerging sector. However, information gaps remain concerning certain aspects of the domestic seaweed aquaculture industry. The purpose of this study was to examine the status of the seaweed aquaculture industry along the West Coast of the United States; specifically in the states of California, Oregon, and Washington. Seaweed farmers in these states were invited to voluntarily complete surveys asking important production, economic, and commercial questions regarding their operations. Data …
Effects Of Round-Up On The Environment, Sandra J. Marcu
Effects Of Round-Up On The Environment, Sandra J. Marcu
Journal of Earth and Life Science
Many people around the world have used and still currently use Roundup but are unaware of the effects it has on the environment. Roundup is a spray on application weedkiller that is widely used around the world today both residentially and commercially. It enables its user to grow a garden or a field of crops with a no-tilling approach to eliminate weeds. It is a well-known and popular choice for killing weeds that has been around since the mid 1970’s (Oca, 2017). John Franz, a Monsanto scientist discovered that glyphosate (main ingredient in Roundup) was an herbicide or weedkiller, and …
Management Adaptations To Sustainably Increase Soybean Yield And Water Productivity Through Field Studies And Crop Modeling, Mounica Talasila
Management Adaptations To Sustainably Increase Soybean Yield And Water Productivity Through Field Studies And Crop Modeling, Mounica Talasila
Theses and Dissertations--Plant and Soil Sciences
Soybean (Glycine max [L.] Merr.), a major crop in the upper U.S. Mid-South, is predominantly cultivated under rainfed conditions, where variable precipitation frequently induces water stress and limits yield potential. Consequently, irrigation adoption has been increasing across this region. Determining the optimal cultivar maturity group (MG) and planting date (PD) for both rainfed and irrigated systems is essential for maximizing yield and improving water use metrics. Evaluating crop water use efficiency (WUE; yield per unit of seasonal evapotranspiration) and total water productivity (WP; yield per unit of total water input from precipitation and irrigation) is critical to developing such …
Factors Impacting Germination, Emergence, And Establishment Of Direct Seeded And Transplanted Hemp (Cannabis Sativa L.), Paul Cockson Dr.
Factors Impacting Germination, Emergence, And Establishment Of Direct Seeded And Transplanted Hemp (Cannabis Sativa L.), Paul Cockson Dr.
Theses and Dissertations--Plant and Soil Sciences
Industrial hemp (IH) establishment has many challenges including: poor emergence, low stand establishment, and variable plant development in direct seeded hemp. In floral hemp production, quality transplant production is a challenge with seedlings often becoming root bound and etiolated. In both direct seeded and transplant hemp, the relationship between root vigor and vegetative growth has not been studied and may prove insightful for managing emergence and establishment challenges. The goals of this study were three-fold: 1) to measure and describe root system architecture (RSA) and root phenotypes observed in selected IH cultivars especially in regard to identifying agronomically important RSA …
Greenhouse Management For The Smaller Structure--Educational And Hobby, Stacy A. Adams
Greenhouse Management For The Smaller Structure--Educational And Hobby, Stacy A. Adams
Department of Agronomy and Horticulture: Faculty Publications
Greenhouses used for teaching or by hobbyist are smaller than those used for commercial production or found in the retail environment. Structural materials, covering, mechanical equipment, and control systems often are packaged as a kit made available through greenhouse suppliers. Supplier construction services may not be available, in which buyers must use local contractors to complete the installation. Greenhouses are unique structures that differ greatly from sheds or other outbuildings. They have coverings that allow maximum light transmittance, protected from UV degradation, and can handle wide inside to outside temperature extremes. This extension circular provides valuable information on the character, …
Addressing Food Security In Cameroon, Stacy A. Adams, Ruth Abunaw Besong
Addressing Food Security In Cameroon, Stacy A. Adams, Ruth Abunaw Besong
Department of Agronomy and Horticulture: Faculty Publications
Cameroon Africa has experience a period of nearly a decade of unrest as militants fight for independence for two Anglophone regions within a predominantly Francophone country. The English-speaking minority have felt aggrieved for continued erosion of rights by the central government. Protests have rapidly spread since 2016, causing closure of schools, businesses, and medical facilities. People have lost homes and been displaced, negatively affecting food production and crop availability. The United States Department of State leads an effort of diplomacy beyond emergency food relief through the Mandela Washington Fellowship that connects American professionals to innovative and impactful young African leaders. …
Terrarium- An Ecosystem In A Jar, Stacy A. Adams
Terrarium- An Ecosystem In A Jar, Stacy A. Adams
Department of Agronomy and Horticulture: Faculty Publications
STEM education is supported through hand's-on activities in the classroom. Content understanding and reaffirmation of knowledge is supported through this informative STEM-Quick card that teachers or extension educators can distribute to participants for reference. Terrariums provide an example of a closed ecosystem where water and carbon cycling is demonstrated and plant growth can be observed. This card presents the steps to building and caring for an easy to create terrarium.
An Apple A Day: Have The Growing Conditions Of Apples In Maine Changed Over The Past 20 Years, Anooshka Sethi
An Apple A Day: Have The Growing Conditions Of Apples In Maine Changed Over The Past 20 Years, Anooshka Sethi
Honors Theses
Climate change is increasingly affecting the growing conditions that farmers face. This study focused on if and how the growing conditions of apples have changed over the past two decades. Apples are an economically, socially, and culturally important crop to Maine's agriculture landscape. By production acreage, Maine is the second largest state in New England, with 2700 acres of land used to grow apples (USDA NASS CoA, 2022). A unique characteristic of agricultural production in Maine is that most farms are small-scale, run by families or small groups, making adverse changes to the growing conditions of a major crop in …
Remote Sensing - Based Mapping And Analysis Of Winter Cover Crop Adoption For Sustainable Agriculture, Minnehaha County, Belinda Buechler
Remote Sensing - Based Mapping And Analysis Of Winter Cover Crop Adoption For Sustainable Agriculture, Minnehaha County, Belinda Buechler
Electronic Theses and Dissertations
Winter cover crops planted by farmers such as cereal rye, crimson clover, radishes, hairy vetch, and winter wheat are used to conserve and protect the soil during winter. These crops offer numerous benefits such as improving soil health, reducing erosion, fixing nitrogen, increasing carbon sequestration, and weed suppression. Over time, winter cover cropping has been recognized as a sustainable agricultural practice and has gained attention from Federal and State conservation programs, farmers, and non-governmental organizations. Due to their vital benefits, agencies such as the United States Department of Agriculture (USDA), Natural Resources Conversation Services (NRCS) have partnered with cost-share programs …
A Historical Assessment Of The Number Of Days Required To Plant The Arkansas Soybean Crop, Bayarbat Badarch, K. Bradley Watkins, Terry Griffin
A Historical Assessment Of The Number Of Days Required To Plant The Arkansas Soybean Crop, Bayarbat Badarch, K. Bradley Watkins, Terry Griffin
Agricultural Economics and Agribusiness Faculty Publications and Presentations
The primary objective of this paper is to quantitatively analyze the number of acres planted per suitable fieldwork day and the total number of fieldwork days available for the complete planting of soybeans (Glycine max L.) in Arkansas. Total days to plant soybeans in each spring from 1980 to 2023 averaged about 33 days, indicating that roughly 33 days are expected, on average, from the month of April to May based on USDA-NASS weekly crop progress and condition data. Furthermore, the average soybean planted acres is estimated at 106,736 acres per day within the study period. Recently, variations in …
Evaluation Of Biochar As A Remediation Tool For Aminopyralid Contaminated Compost, Steven James Parris
Evaluation Of Biochar As A Remediation Tool For Aminopyralid Contaminated Compost, Steven James Parris
Masters Theses & Specialist Projects
Aminopyralid is a synthetic auxin herbicide which is applied to grass pastures to control broadleaf weed populations. Aminopyralid can contaminate compost through inputs derived from treated pastures such as manure and grass clippings. This possibility poses the threat of inadvertent herbicide exposure to sensitive vegetable plants through using compost contaminated with aminopyralid. Biochar can absorb pollutants and has a synergistic effect with compost when applied to the compost mixture. This study examined the relationship between biochar and aminopyralid through compost consisting of dairy manure and sawdust 1:1 mixture, aminopyralid (10μg/kg), and biochar at four treatment levels of total mass of …
Assessment Of Drought Tolerance In Mung Bean [Vigna Radiata (L.) Wilczek] Through Phenology, Growth, Protein Yield, And Cluster Heatmap Analysis, Rafiqul Islam, Jamil Hossain, Shamsul Huda, Mohammad Golam Azam, Faruk Hossain, Aktar Uz Zaman, Safiqul Moula, Nasir Uddin Ahmed, Jamal Hossain, Ayman El Sabagh, Mohammad Sohidul Islum
Assessment Of Drought Tolerance In Mung Bean [Vigna Radiata (L.) Wilczek] Through Phenology, Growth, Protein Yield, And Cluster Heatmap Analysis, Rafiqul Islam, Jamil Hossain, Shamsul Huda, Mohammad Golam Azam, Faruk Hossain, Aktar Uz Zaman, Safiqul Moula, Nasir Uddin Ahmed, Jamal Hossain, Ayman El Sabagh, Mohammad Sohidul Islum
The Philippine Agricultural Scientist
Mung bean [Vigna radiata (L.) Wilczek] cultivation is challenging under the changing climate as less precipitation during the summer season, which is becoming increasingly common, results in soil moisture deficiency and affects production especially at the early growth stages. Hence, this study was conducted to assess the phenology, growth, and protein yield traits of mung bean related to drought tolerance. Eight mung bean genotypes were grown in pots inside a rain-out shelter under well-watered (WW) and water-deficit (WD) conditions. These genotypes included four water stress-tolerant genotypes: G-1 (BARI Mung-8), G-2 (BMX-010015), G-3 (BMX-08010-2), and G-4 (BMX-08009-7), as well as four …
Site Position, Tillage, And Soil Depth Effects On Soil Properties In A Furrow-Irrigated Rice Field On A Silt-Loam Soil, Hannah Nobles, Kristofor Brye, Diego Della Lunga
Site Position, Tillage, And Soil Depth Effects On Soil Properties In A Furrow-Irrigated Rice Field On A Silt-Loam Soil, Hannah Nobles, Kristofor Brye, Diego Della Lunga
Crop, Soil and Environmental Sciences Undergraduate Honors Theses
The fundamental agronomic shift from conventional agricultural methods to conservation agriculture relies on understanding soil nutrient stratification with depth and under different tillage treatments. Assessment of nutrient stratification in the dynamic conditions of furrow-irrigated rice (Oryza sativa) systems in eastern Arkansas is absent. The objective of this study was to evaluate the effects of tillage [i.e., conventional tillage (CT) and no tillage (NT], site position (i.e., up-, mid-, and down-slope), soil depth interval (i.e., 0-10 and 10-20 cm), and their interaction on the difference (i.e., end of the season minus beginning of the season) in select soil chemical …
Soybean Seed Yield Distribution Within The Canopy As Affected By Nitrogen Supply, Lucia Bonfanti
Soybean Seed Yield Distribution Within The Canopy As Affected By Nitrogen Supply, Lucia Bonfanti
Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research
Soybean [Glycine max (L.) Merr.] seed yield is influenced by the seasonal availability of resources (i.e., nutrients, light, and water). While nitrogen (N) supply is becoming a soybean yield-limiting factor, the N-induced effect in seed yield components is still unclear. The objective of this research was to assess the effect of N supply on soybean yield components distribution within the canopy. A Full-N treatment, which provided the crop with ample N supply, was compared against a Zero-N treatment in which the crop relied on soil N and biological N fixation at nine high-yielding irrigated soybean environments in Nebraska, with …
Compact Solar-Powered Plasma Water Generator: Enhanced Germination Of Aged Seed With The Corona Dielectric Barrier Discharger, Yiting Xiao, Yang Tian, Haizheng Xiong, Ainong Shi, Jun Zhu
Compact Solar-Powered Plasma Water Generator: Enhanced Germination Of Aged Seed With The Corona Dielectric Barrier Discharger, Yiting Xiao, Yang Tian, Haizheng Xiong, Ainong Shi, Jun Zhu
Biological and Agricultural Engineering Faculty Publications and Presentations
Seed aging adversely affects agricultural productivity by reducing germination rates and seedling vigor, leading to significant costs for seed banks and companies due to the need for frequent seed renewals. This study demonstrated the use of plasma-activated water (PAW), generated by a solar-powered corona dielectric barrier discharger, to enhance germination rates of spinach seeds that had been stored at 4 °C for 23 years. Treating seeds with PAW at 17 kV for 15 min improved germination (by 135%) and seedling growth compared to untreated seeds. Through detailed analysis, beneficial PAW properties for seed development were identified, and a molecular mechanism …
Evaluating The Duckweeds Lemna Minor And Spirodela Polyrhiza As Alternative Aquatic Hosts For The Spread Of The Bacterial Wilt Pathogen, Ralstonia Solanacearum, Irelynn Smith
Honors Theses
Ralstonia solanacearum is a plant pathogen that causes bacterial wilt disease in major crops such as tomatoes and potatoes. Recently, this bacterium was discovered in floating pennywort (Hydrocotyle ranunculoides) and Pennsylvania smartweed (Polygonum pennysylvanicum), two previously unsuspected aquatic plants. Duckweed is an aquatic plant with a high level of resilience and short doubling time. Common duckweed (Lemna minor) has previously demonstrated its capability as a versatile high-yield infection model for other types of pathogenic bacteria. Given this newfound branch of aquatic hosts and the fact that duckweed is a common pond weed previously identified in several ponds located nearby infected …
Rice Response To Struvite And Other Phosphorus Fertilizers In A Phosphorus-Deficient Soil Under Simulated Furrow-Irrigation, Jonathan B. Brye, Diego Della Lunga, Kristofor R. Brye
Rice Response To Struvite And Other Phosphorus Fertilizers In A Phosphorus-Deficient Soil Under Simulated Furrow-Irrigation, Jonathan B. Brye, Diego Della Lunga, Kristofor R. Brye
Crop, Soil and Environmental Sciences Faculty Publications and Presentations
Wastewater-recovered phosphorus (P), in the form of the mineral struvite (MgNH4PO4⋅6H2O), may provide a sustainable alternative to decreasing rock-phosphate reserves. Struvite can be generated via precipitation methods, potentially reducing the amount of P runoff to aquatic ecosystems. The objective of this greenhouse tub study was to evaluate the effects of chemically- and electrochemically precipitated struvite (CPST and ECST, respectively) on above- and belowground plant response in a hybrid rice (Oryza sativa) cultivar grown using furrow-irrigation compared to other common fertilizer-P sources [i.e., triple super phosphate (TSP) and diammonium phosphate (DAP)]. Rice was …
North Dakota Corn Efficiency Frontier: Stochastic Frontier Analysis, Bayarbat Badarch, David C. Roberts, Michael P. Popp
North Dakota Corn Efficiency Frontier: Stochastic Frontier Analysis, Bayarbat Badarch, David C. Roberts, Michael P. Popp
Agricultural Economics and Agribusiness Faculty Publications and Presentations
According to climate studies in North Dakota, the state's crop-growing season has been extended. In addition, many studies have shown technological advances in crop production. However, the state has not addressed how crop yield has been affected by weather changes. Thus, this paper investigates the state's corn (Zea mays) yield potential and efficiency measures based on agricultural input use and weather variables from 1994 to 2018. We found that the effects of temperature and precipitation on the state's corn yield frontier (potential) were greater than those of changing agricultural input variables. The stochastic frontier model indicates that the …
Use Of A Capsule Suspension Formulation Of S-Metolachlor In Fenclorim-Treated Rice, Jason K. Norsworthy, Samuel C. Noe, Thomas R. Butts, Trenton L. Roberts
Use Of A Capsule Suspension Formulation Of S-Metolachlor In Fenclorim-Treated Rice, Jason K. Norsworthy, Samuel C. Noe, Thomas R. Butts, Trenton L. Roberts
Crop, Soil and Environmental Sciences Faculty Publications and Presentations
As herbicide resistance continues to render commonly used rice herbicides ineffective, alternative sites of action are paramount to maintaining yield and producer profitability. Combining a slow-release formulation and a fenclorim seed treatment might allow the safe use of S-metolachlor in rice. Experiments were initiated in 2022 and 2023 near Colt, AR, on a silt loam soil to evaluate crop safety using a capsule suspension (CS) formulation of S-metolachlor and a fenclorim seed treatment in rice. The first experiment assessed the tolerance of two cultivars (‘Diamond’ and ‘DG263L’) to three rates (0.42, 0.84, and 1.68 kg ai ha−1 …
Broad-Spectrum Resistance To Fungal Foliar Diseases In Wheat: Recent Efforts And Achievements, Amira M.I. Mourad, Asmaa A.M. Ahmed, P. Stephen Baenziger, Andreas Börner, Ahmed Sallam
Broad-Spectrum Resistance To Fungal Foliar Diseases In Wheat: Recent Efforts And Achievements, Amira M.I. Mourad, Asmaa A.M. Ahmed, P. Stephen Baenziger, Andreas Börner, Ahmed Sallam
Department of Agronomy and Horticulture: Faculty Publications
Wheat (Triticum spp.) is one of the most important cereal crops in the world. Several diseases affect wheat production and can cause 20-80% yield loss annually. Out of these diseases, stripe rust, also known as yellow rust (Puccinia striiformis f. sp. tritici), stem rust (Puccinia graminis f. sp. tritici), leaf rust (Puccinia recondita), and powdery mildew (Blumeria graminis f. sp. tritici) are the most important fungal diseases that infect the foliar part of the plant. Many efforts were made to improve wheat resistance to these diseases. Due to the continuous advancement in …
Disentangling Genotype And Environment Specific Latent Features For Improved Trait Prediction Using A Compositional Autoencoder, Anirudha Powadi, Talukder Zaki Jubery, Michael C. Tross, James C. Schnable, Baskar Ganapathysubramanian
Disentangling Genotype And Environment Specific Latent Features For Improved Trait Prediction Using A Compositional Autoencoder, Anirudha Powadi, Talukder Zaki Jubery, Michael C. Tross, James C. Schnable, Baskar Ganapathysubramanian
Department of Agronomy and Horticulture: Faculty Publications
In plant breeding and genetics, predictive models traditionally rely on compact representations of high-dimensional data, often using methods like Principal Component Analysis (PCA) and, more recently, Autoencoders (AE). However, these methods do not separate genotype-specific and environment-specific features, limiting their ability to accurately predict traits influenced by both genetic and environmental factors. We hypothesize that disentangling these representations into genotype-specific and environment-specific components can enhance predictive models. To test this, we developed a compositional autoencoder (CAE) that decomposes high-dimensional data into distinct genotype-specific and environment-specific latent features. Our CAE framework employed a hierarchical architecture within an autoencoder to effectively separate …