Agronomy and Crop Sciences Commons^™

Genome-Wide Discovery Of Natural Variation In Pre-Mrna Splicing And Prioritising Causal Alternative Splicing To Salt Stress Response In Rice, Huihui Yu, Qian Du, Malachy Campbell, Bin Yu, Harkamal Walia, Chi Zhang

Department of Agronomy and Horticulture: Faculty Publications

Pre-mRNA splicing is an essential step for the regulation of gene expression. In order to specifically capture splicing variants in plants for genome-wide association studies (GWAS), we developed a software tool to quantify and visualise Variations of Splicing in Population (VASP). VASP can quantify splicing variants from short-read RNA-seq datasets and discover genotype-specific splicing (GSS) events, which can be used to prioritise causal pre-mRNA splicing events in GWAS. We applied our method to an RNA-seq dataset with 328 samples from 82 genotypes from a rice diversity panel exposed to optimal and saline growing conditions. In total, 764 significant GSS events …

Gwas Revealed Effect Of Genotype × Environment Interactions For Grain Yield Of Nebraska Winter Wheat, Shamseldeen Eltaher, P Stephen Baenziger, Vikas Belamkar, Hamdy A. Emara, Ahmed A. Nower, Khaled F.M. Salem, Ahmad M. Alqudah, Ahmed Sallam

Department of Agronomy and Horticulture: Faculty Publications

Background: Improving grain yield in cereals especially in wheat is a main objective for plant breeders. One of the main constrains for improving this trait is the G × E interaction (GEI) which affects the performance of wheat genotypes in different environments. Selecting high yielding genotypes that can be used for a target set of environments is needed. Phenotypic selection can be misleading due to the environmental conditions. Incorporating information from phenotypic and genomic analyses can be useful in selecting the higher yielding genotypes for a group of environments. Results: A set of 270 F_3:6 wheat genotypes in the …

Fungicide, Insecticide, And Foliar Fertilizer Effect On Soybean Yield, Seed Composition, And Canopy Retention, Kelsey Bergman, Ignacio Clampitti, Peter Sexton, Péter Kovács

Agronomy, Horticulture and Plant Science Faculty Publications

Soybean [Glycine max (L.) Merr.] yield has increased over time through the introduction of new varieties and improved agronomic practices. However, seed protein concentration has decreased. We conducted field studies in 2018 and 2019 to investigate the effects of fungicide, insecticide, and foliar fertilizer application on grain yield and seed quality in two soybean maturity groups (MG). In‐season treatments targeted nutrient availability and soybean canopy duration during the seed‐filling period by fungicide, insecticide, or foliar fertilizer application at the onset of this period. Biomass samples were collected at R5, R6, and R7 and partitioned into plant parts. Year, location, …

Agronomic Response Of Camelina To Nitrogen And Seeding Rate On The Northern Great Plains, Thandiwe Nleya, Dwarika Bhattarai, Phillip Alberti

Agronomy, Horticulture and Plant Science Faculty Publications

Camelina (Camelina sativa L. Crantz,) a new oilseed crop in the Brassicaceae family has favorable agronomic traits and multiple food and industrial uses. Appropriate production practices for optimal camelina yield in temperate climates of North America are lacking. This study investigated the response of camelina seed yield and quality, and agronomic traits to applied N (5 levels, 0, 28, 56, 84, 140 kg ha−1) and four seeding rates (4.5, 9, 13, 17.5 kg ha−1). Separate experiments were conducted at four environments (site-years) for N and three environments for seeding rate in South Dakota. In three of the four environments, the …

Contents, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Instructions For Authors, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Wa Insecticide Guide 2021 - Autumn Winter, Amber Balfour-Cunningham, Dusty Severtson

PestFacts WA

Registered chemicals for crops during autumn and winter 2021 in Western Australia

Wa Insecticide Guide 2021 - Winter Spring, Svetlana Micic, Alan Lord

PestFacts WA

Registered chemicals for crops during winter and spring 2021.

The pesticides listed in the tables below can be used on any crop appearing on the chemical label, as long as the rate used does not exceed the highest rate that is registered for use on that crop.

There are many products with different trade names that contain the same active ingredient. This list is not exhaustive and does not imply any specific recommendations of brand names.

Unless otherwise specified all insecticides listed are emulsifiable concentrate (EC). Insecticides with SC are suspension concentrate, WP is wettable powder, CS is capsule suspension, …

The Role Of Peer Irrigators On The Choice And Intensity Of Use Of Irrigation Techniques, Noah Hayward, Kent Kovacs

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

The use and the proportion of farmland that uses prominent irrigation practices in Arkansas were evaluated. A bivariate sample selection model evaluated the determinants of the share of irrigated land in a farm that uses each practice. In addition, the relationship between the irrigation practices a peer uses and the use and intensity of five common irrigation practices was evaluated. If a peer of an Arkansas farmer used center pivot irrigation, this increased the probability that the farmer used center pivot irrigation by 66 percentage points. A peer that used pivot irrigation decreased the proportion of irrigated land that used …

Baseline Sensitivity To Demethylation Inhibitors Fungicides In Cercospora Spp. And Corynespora Spp. In Arkansas Soybeans, Evan Buckner, Alejandro Rojas

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

Cercospora spp. and Corynespora spp. are two common foliar fungal pathogens in Arkansas and other soybean-producing areas. Two primary diseases caused by Cercospora spp. are Cercospora Leaf Blight (CLB, caused mainly by C. kikuchii) and Frogeye Leaf Spot (C. sojina). Over time, many fungicides used to combat these diseases have become ineffective as the pathogens have developed a resistance to them. The class of the fungicide in question is Triazoles [Demethylation Inhibitors (DMI)–FRAC 3]. Fifteen isolates consisting of Corynespora cassiicola, Cercospora sojina, and Cercospora flagellaris were tested to determine baseline sensitivities using serial dilutions (0, 0.01, 1, 10, 50 mg/L) …

Willingness-To-Pay For Halal And Branded Poultry In Northern Mozambique, Alison J. Creasey, L. Lanier Nalley

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

While price typically drives consumers’ food-purchasing decisions in low-income countries, religious attributes associated with food production and corporate branding could influence buying patterns. In Mozambique, more than 46% of people were living below the poverty line of ($0.31 USD) per day in 2018. That being said, in the Nampula Province (the location of this study), which is the second poorest province in the country, over 25% of the population is Muslim and may be willing-to-pay (WTP) a premium for Halal meat products to uphold Islamic beliefs. Like many parts of sub-Saharan Africa, poultry is the fastest-growing source of protein. Since …

Seed-Shattering Phenology At Soybean Harvest Of Economically Important Weeds In Multiple Regions Of The United States. Part 2: Grass Species, Lauren M. Schwartz-Lazaro, Lovreet S. Shergill, Jeffrey A. Evans, Muthukumar V. Bagavathiannan, Shawn C. Beam, Mandy D. Bish, Jason A. Bond, Kevin W. Bradley, William S. Curran, Adam S. Davis, Wesley J. Everman, Michael L. Flessner, Steven C. Haring, Nicholas R. Jordan, Nicholas E. Korres, John L. Lindquist, Jason K. Norsworthy, Tameka L. Sanders, Larry E. Steckel, Mark J. Vangessel, Blake Young, Steven B. Mirsky

Department of Agronomy and Horticulture: Faculty Publications

Seed shatter is an important weediness trait on which the efficacy of harvest weed seed control (HWSC) depends. The level of seed shatter in a species is likely influenced by agroecological and environmental factors. In 2016 and 2017, we assessed seed shatter of eight economically important grass weed species in soybean [Glycine max (L.) Merr.] from crop physiological maturity to 4 wk after maturity at multiple sites spread across 11 states in the southern, northern, and mid-Atlantic United States. From soybean maturity to 4 wk after maturity, cumulative percent seed shatter was lowest in the southern U.S. regions and increased …

Coal Char Effects On Soil Chemical Properties And Maize Yields In Semi-Arid Region, Dinesh Panday, Maysoon M. Mikha, Xiaocun Sun, Bijesh Maharjan

Department of Agronomy and Horticulture: Faculty Publications

Soil amendments with high carbon (C) content can be effective in semi-arid regions where soils are characterized by low C. A field study was conducted in 2016–2018 to evaluate the effect of char on soil chemical properties and irrigated maize (Zea mays L.) yields in sandy loam fertilized with urea or composted manure. Carbon-rich char used was a product of coal combustion residue from a local factory in western Nebraska. The experiment was arranged in a split-plot randomized complete block design in four replications with char (0, 6.7, 13.4, 20.1, and 26.8Mg C ha⁻¹) as main and …

Implications Of Broadleaf, Grass, And A Blend Of Broadleaf And Grass Cover Crops On Soil Health And Corn Production In South Dakota, Hunter Bielenberg

Electronic Theses and Dissertations

Cover crops have recently gained attention in the U.S. Midwest because of their potential to increase soil organic matter and protect overall soil health. This study was conducted to determine the effects of different cover crop mixtures on soil health measurements and corn grain yield at increasing nitrogen (N) rates. Cover crops were planted in the fall after small grains harvest as a dominantly grass mixture, dominantly broadleaf mixture, or a 50/50 grass and broadleaf mixture with a no cover crop control. Soil and cover crop biomass samples were collected in the fall before winter cold termination and in the …

Soil Organic Carbon, Hydro-Physical Properties, Pore Structure And Greenhouse Gas Fluxes Under Integrated Crop-Livestock System, Jashanjeet Kaur Dhaliwal

Electronic Theses and Dissertations

Integrated crop-livestock system (ICLS) can improve soil organic carbon (SOC), enhance soil hydro-physical properties, and mitigate greenhouse gas (GHG) emissions. The objectives of this study were to: (i) investigate the influence of grazing, cover crop (CC), and a combination of grazing and CC on labile soil carbon (C) and nitrogen (N) fractions and soil enzyme activity, (ii) assess the impacts of short-term (3-4 years) and long-term (>30 years) ICLS on SOC, bulk density, structural quality and water infiltration, (iii) evaluate soil pore structural properties such as porosity, number of pores, pore size, pore shape, fractal dimension, anisotropy and tortuosity …

Genome-Wide Association Analysis Permits Characterization Of Stagonospora Nodorum Blotch (Snb) Resistance In Hard Winter Wheat, Rami Altameemi

Electronic Theses and Dissertations

Stagonospora nodorum blotch (SNB) is an economically important wheat disease caused by the necrotrophic fungus Parastagonospora nodorum. SNB resistance in wheat is controlled by several quantitative trait loci (QTLs). Thus, the identifying of novel resistance/susceptibility QTLs is crucial for continuous improvement of the SNB resistance. Here, the hard winter wheat association mapping panel (HWWAMP) comprising accessions from breeding programs in the Great Plains region of the US, was evaluated for SNB resistance and necrotrophic effectors (NEs) sensitivity at the seedling stage. A genome-wide association study (GWAS) was performed to identify singlenucleotide polymorphism (SNP) markers associated with SNB resistance and …

Letter From The Dean, Deacue Fields

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 22 2021, Several Authors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Genome Wide Association Study On Kernel Size In Avena Sativa (Oats), Koryne Ann Carlson

Electronic Theses and Dissertations

Kernel size is a vital milling characteristic for Avena sativa L. (oats), with larger kernel size being desirable for milling facilities. This project evaluated the effect of genotype, environment, and their genotype by environment interaction (G by E) on kernel width, length, and area for a set of 27 oat cultivars grown at multiple locations in South Dakota over three years. Findings indicated significant differences among oat varieties, and that environment had a substantial effect on kernel size. However, we did not see a strong influence of genotype by environment interaction on kernel size. The lack of impact for genotype …

Influence Of Cover Crops On Water And Nutrient Cycles In South Dakota, Sam Ireland

Electronic Theses and Dissertations

A major concern of farmers implementing cover crops into a crop rotation is a potential reduction in soil moisture and nutrients available for the following cash crop. If soil moisture or nutrients are limited, the following cash crop yield suffers. One option to conserve soil moisture is to terminate cover crops with herbicides prior to a killing freeze. The purpose of this study is to develop a better understanding of the impact of cover crops and termination timing to the water and nutrient cycles and furthermore, the agronomic impact to the following cash crop (corn). Field experiments were conducted in …

James B Beard: The Father Of Contemporary Turfgrass Science, G.K. Stahnke, P.E. Rieke, Robert C. Shearman, Roch E. Gaussoin, David Kopec

Department of Agronomy and Horticulture: Faculty Publications

James B Beard (24 Sept 1935 to 8 May 2018) can rightly be considered the “Father” of contemporary turfgrass science. During his career, he was known for setting a standard that provided the foundation for turfgrass science through his thorough approach to research, teaching, mentoring and communications. The books he published outlined a vision for an evolving scientific discipline. He trained and mentored >45 domestic and international doctoral and master students and numerous post-doctoral trainees, who in turn continued to raise the quality of contemporary turfgrass science in the USA and internationally. He led the effort to change the name …

Featured Faculty Mentor And Student Explore The Dynamics Of This Research Relationship, Alejandro Rojas, Evan Buckner

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Letter From The Faculty Editor, Beth Kegley

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Studies On Genetic Characterization Of Agronomic Traits And Disease Resistance In Bread Wheat, Jyotirmoy Halder

Electronic Theses and Dissertations

A steady increase in wheat yield is vital to feed the continuously rising world population. Systematic exploitation of wheat germplasm and a better understanding of the underlying genetic control could be pivotal in accelerating the genetic gain for yield and disease management. Various modern techniques such as genome-wide association study (GWAS), genomic selection (GS), fine mapping, and cloning can expedite wheat improvement and broaden our understanding of the complex wheat genome. In the first objective of this study, we evaluated the Watkins core set of 121 landrace cultivars (LCs) to identify novel sources of resistance against the tan spot, Stagonospora …

Does Biochar Improve All Soil Ecosystem Services?, Humberto Blanco-Canqui

Department of Agronomy and Horticulture: Faculty Publications

Biochar is considered to sequester C and deliver other soil ecosystem services, but an overview that synthesizes the current knowledge of biochar implications on all essential soil ecosystem services is difficult to find in the ample biochar literature. Most previous research and review articles on this topic focused on a single ecosystem service and did not integrate all essential soil ecosystem services. This overview paper (1) synthesizes the impacts of biochar on water and wind erosion, C sequestration, soil water, nutrient leaching, soil fertility, crop yields, and other soil ecosystem services based on published literature and (2) highlights remaining research …

Representativeness Of Eddy-Covariance Flux Footprints For Areas Surrounding Ameriflux Sites, Housen Chu, Timothy Arkebauer, Dave P. Billesbach, Hideki Kobayashi, Thomas J. Kolbe, Gregory Starr, Andrew Suyker, 63 Other Coauthors

Department of Agronomy and Horticulture: Faculty Publications

Large datasets of greenhouse gas and energy surface-atmosphere fluxes measured with the eddy-covariance technique (e.g., FLUXNET2015, AmeriFlux BASE) are widely used to benchmark models and remote-sensing products. This study addresses one of the major challenges facing model-data integration: To what spatial extent do flux measurements taken at individual eddy-covariance sites reflect model- or satellite-based grid cells? We evaluate flux footprints—the temporally dynamic source areas that contribute to measured fluxes—and the representativeness of these footprints for target areas (e.g., within 250–3000 m radii around flux towers) that are often used in flux-data synthesis and modeling studies. We examine the land-cover composition …

Guidelines For The Use And Interpretation Of Assays For Monitoring Autophagy (4th Edition), Daniel Klionsky, Rodrigo Franco, Guangchao Sun, Richard Wilson, More Than 2000 Coauthors

Department of Agronomy and Horticulture: Faculty Publications

In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to …

Continuous In Situ Soil Nitrate Sensors: The Importance Of High-Resolution Measurements Across Time And A Comparison With Salt Extraction-Based Methods, Yunjiao Zhu, Yuncong Chen, Md. Azahar Ali, Liang Dong, Xinran Wang, Sotirios V. Archontoulis, James Schnable, Michael J. Castellano

Department of Agronomy and Horticulture: Faculty Publications

Soil NO₃^– affects microbial processes, plant productivity, and environmental N losses. However, the ability to measure soil NO₃^– is limited by labor-intensive sampling and laboratory analyses. Hence, temporal variation in soil solution NO₃^– concentration is poorly understood. We evaluated a new potentiometric sensor that continuously measures soil solution NO₃^– concentration with unprecedented specificity due to a novel membrane that serves as a barrier to interfering anions. First, we compared sensor and salt extraction-based measurements of soil NO₃^– in well-controlled laboratory conditions. Second, using 60 d of in situ soil NO …

Skeleton Weed Program 2020/21: Annual Report To Grain Growers, Department Of Primary Industries And Regional Development, Western Australia

Agriculture reports

No abstract provided.

Nitrogen Response Functions Targeted To Technology Extrapolation Domains In Ethiopia Using Ceres-Maize, Feyera Merga Liben, Charles S. Wortmann, Haishun Yang, Tsegaue Tadesse, Z. P. Stewart, D. Wegary, W. Mupangwa

Department of Agronomy and Horticulture: Faculty Publications

The profitability of fertilizer-N use can be optimized using N response functions specific to climate-based technology extrapolation domains (TED). Crop growth simulation can complement field research for targeting of response functions. The objective of this study was to target maize (Zea mays L.) N response functions to seven TED in Ethiopia through CERES-Maize simulation of continuous maize over 30 yr. The complete factorial set of treatments included seven levels of N in 25 kg ha⁻¹ increments under no-till (NT) and conventional tillage (CT) systems. The CERES-Maize simulated experiments were done for two or three sites per TED. Nitrogen …