Agronomy and Crop Sciences Commons^™

Pestfacts Wa Issue 11 - July 2022, Ciara Beard, Geoff J. Thomas

PestFacts WA

PestFacts WA Issue 11 - July 2022 contents:

• Wheat powdery mildew in the Geraldton port zone

Increased Signal-To-Noise Ratios Within Experimental Field Trials By Regressing Spatially Distributed Soil Properties As Principal Components, Jeffrey C. Berry, Mingsheng Qi, Balasaheb V. Sonawane, Amy Sheflin, Asaph Cousins, Jessica Prenni, Daniel P. Schachtman, Peng Liu, Rebecca S. Bart

Department of Agronomy and Horticulture: Faculty Publications

Environmental variability poses a major challenge to any field study. Researchers attempt to mitigate this challenge through replication. Thus, the ability to detect experimental signals is deter-mined by the degree of replication and the amount of environmental variation, noise, within the experimental system. A major source of noise in field studies comes from the natural heterogeneity of soil properties which create microtreatments throughout the field. In addition, the variation within different soil properties is often nonrandomly distributed across a field. We explore this challenge through a sorghum field trial dataset with accompanying plant, microbiome, and soil property data. Diverse sorghum …

Expression Of Atwri1 And Atdgat1 During Soybean Embryo Development Influences Oil And Carbohydrate Metabolism, Cintia Lucía Arias, Truyen Quach, Tu Huynh, Hanh Nguyen, Ademar Moretti, Yu Shi, Ming Guo, Amira Rasoul, Kyujung Van, Leah Mchale, Thomas E. Clemente, Ana Paula Alonso, Chi Zhang

Department of Agronomy and Horticulture: Faculty Publications

Soybean oil is one of the most consumed vegetable oils worldwide. Genetic improvement of its concentration in seeds has been historically pursued due to its direct association with its market value. Engineering attempts aiming to increase soybean seed oil presented different degrees of success that varied with the genetic design and the specific variety considered. Understanding the embryo’s responses to the genetic modifications introduced, is a critical step to successful approaches. In this work, the metabolic and transcriptional responses to AtWRI1 and AtDGAT1 expression in soybean seeds were evaluated. AtWRI1 is a master regulator of fatty acid (FA) biosynthesis, and …

Arkansas Corn And Grain Sorghum Research Studies 2021, Victor Ford, Jason Kelley, Nathan Mckinney Ii

Arkansas Agricultural Experiment Station Research Series

The 2021 edition of the Arkansas Corn and Grain Sorghum Research Studies Series includes research results on topics pertaining to corn and grain sorghum production, including weed, disease, and insect management; economics; sustainability; irrigation; post-harvest drying; soil fertility; mycotoxins; cover crop management; and research verification program results. Our objective is to capture and broadly distribute the results of research projects funded by the Arkansas Corn and Grain Sorghum Board. The intended audience includes producers and their advisors, current investigators, and future researchers. The Series serves as a citable archive of research results.

Fine-Mapping And Characterisation Of Genes On Barley (Hordeum Vulgare) Chromosome 2h For Salinity Stress Tolerance During Germination, Edward Mwando, Yong Han, Tefera Angessa, Xiao-Qi Zhang, Chengdao Li

Grain and Other Field Crops Research Articles

Salinity causes a detrimental impact on plant growth, particularly when the stress occurs during germination and early development stages. Barley is one of the most salt-tolerant crops; previously we mapped two quantitative trait loci (QTL) for salinity tolerance during germination on the short arm of chromosome 2H using a CM72/Gairdner doubled haploid (DH) population. Here, we narrowed down the major QTL to a region of 0.341 or 0.439 Mb containing 9 or 24 candidate genes belonging to 6 or 20 functional gene families according to barley reference genomes v1 and v3 respectively, using two DH populations of CM72/Gairdner and Skiff/CM72, …

Identification Of Putative Snp Markers Associated With Resistance To Egyptian Loose Smut Race(S) In Spring Barley, Kamal A.M. Abo-Elyousr, Amira M.I. Mourad, P. Stephen Baenziger, Abdelaal H.A. Shehata, Peter E. Eckstein, Aaron D. Beattie, Ahmed Sallam

Department of Agronomy and Horticulture: Faculty Publications

Loose smut (LS) disease is a serious problem that affects barley yield. Breeding of resistant cultivars and identifying new genes controlling LS has received very little attention. Therefore, it is important to understand the genetic basis of LS control in order to genetically improve LS resistance. To address this challenge, a set of 57 highly diverse barley genotypes were inoculated with Egyptian loose smut race(s) and the infected seeds/plants were evaluated in two growing seasons. Loose smut resistance (%) was scored on each genotype. High genetic variation was found among all tested genotypes indicating considerable differences in LS resistance that …

Sorghum Association Panel Whole-Genome Sequencing Establishes Cornerstone Resource For Dissecting Genomic Diversity, J. Lucas Boatwright, Sirjan Sapkota, Hongyu Jin, James C. Schnable, Zachary Brenton, Richard Boyles, Stephen Kresovich

Department of Agronomy and Horticulture: Faculty Publications

Association mapping panels represent foundational resources for understanding the genetic basis of phenotypic diversity and serve to advance plant breeding by exploring genetic variation across diverse accessions. We report the whole-genome sequencing (WGS) of 400 sorghum (Sorghum bicolor (L.) Moench) accessions from the Sorghum Association Panel (SAP) at an average coverage of 38× (25–72×), enabling the development of a high-density genomic marker set of 43 983 694 variants including single-nucleotide polymorphisms (approximately 38 million), insertions/deletions (indels) (approximately 5 million), and copy number variants (CNVs) (approximately 170 000). We observe slightly more deletions among indels and a much higher prevalence …

Pestfacts Wa Issue 07 - June 2022, Alan Lord, Dusty Severtson, Cindy L. Webster, Svetlana Micic, Kithsiri Jayasena, Geoff J. Thomas, Ciara Beard, Andrea Hills, Jean Galloway

PestFacts WA

PestFacts WA Issue 07 - June 2022 contents:

• Native budworm moths and caterpillars are being found early
• 2022 winter spring insecticide spray guide is now available
• Monitor barley crops for net blotches
• Powdery mildew in barley and wheat
• Sclerotinia apothecia
• Spartacus leaf tipping

Water Quality, Carrier Volume And Droplet Size Effects On Herbicide Efficacy And Drift Potential, Barbara Houston

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Herbicide performance is directly related to the amount of active ingredient that has been deposited on the plant. Hence, spray solution characteristics and application parameters are crucial in determining the efficacy of an herbicide application. To maximize the effectiveness of chemical control, methods to deliver full chemical dose must be utilized: allowing the active ingredient to be readily absorbed once added to the carrier and mitigating off-target movement and low herbicide doses. Water is the most frequently used carrier in herbicide applications. Chemical parameters, such as water hardness and pH, can have a critical role in herbicide performance. It is …

Recombination Hotspots In Soybean [Glycine Max (L.) Merr.], Samantha J. Mcconaughy

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Recombination allows for the exchange of genetic material between two parents which plant breeders exploit to make new and improved varieties. This recombination is not distributed evenly across the chromosome. In crops, it mostly occurs in the euchromatic regions of the genome and even then, recombination is focused into recombination hotspots flanked by recombination cold spots. Understanding the distribution of these hotspots along with the sequence motifs associated with them may lead to methods that enable breeders to better exploit recombination in breeding.

In chapter 1 background information on recombination, recombination hotspots detection methods, landscape of recombination (describe recombination patterns …

Pestfacts Wa Issue 06 - June 2022, Cindy L. Webster, Svetlana Micic, Alan Lord, Benjamin S. Congdon, Steve Collins

PestFacts WA

PestFacts WA Issue 06 - June 2022 contents:

• African black beetle
• Aphid and turnip yellows virus update
• Cutworm caterpillars
• European earwigs are damaging canola
• Other recent insect activity
• New PestFacts WA Reporter app available for apple devices

Quantifying The Effects Of Abiotic Stress On Early Season Growth, Development, And Physiological Characteristics In Corn, Charles Hunt Walne

Theses and Dissertations

Corn is one of American agriculture's greatest success stories, where we have witnessed incredible increases in yield potential over the last half-century. However, abiotic stress is still the primary limiting factor preventing plants from reaching their true yield potential. In addition, agriculture is not exempt from the deleterious effects of changing weather patterns and the altered climate our world will face as time progresses. Thus, increasing our understanding of how crops interact with their environment both above and below the soil will be crucial to increasing production on a global scale while maximizing profitability at a local level. Five studies …

Are You Paid For Your Hard Red Winter Wheat Quality? Yes, But Indirectly, Shane Roberts, Kathleen Brooks, Lia Nogueira, Cory Walters

Cornhusker Economics

Hard red winter wheat (HRWW) is the largest wheat class grown in the United States, with approximately 660 million bushels produced in 2020, representing about 36% of total U.S. wheat production (USDA ERS 2021). The world market is an important destination for U.S. HRWW. In 2020, exports of U.S. HRWW represented 52% of U.S. production and total U.S. wheat exports represented 13% of total world exports (USDA ERS 2021). U.S. HRWW differs from other wheat classes based on physical characteristics such as color, kernel hardness and planting season as well as consistency in producing end uses such as pan and …

Pestfacts Wa Issue 05 - May 2022, Jean Galloway, Cindy L. Webster, Steve Collins

PestFacts WA

PestFacts WA Issue 05 - May 2022 contents:

• Blackleg and the risk of sowing canola on canola
• Meet PestFacts WA team member – Steve Collins

Pestfacts Wa Issue 04 - May 2022, Svetlana Micic, Benjamin S. Congdon, Cindy L. Webster, Andrea Hills, Ravjit Khangura

PestFacts WA

PestFacts WA Issue 04 - May 2022 contents:

• Grasshoppers are hatching
• Aphid activity and turnip yellows virus detections
• Downy mildew and damping off in canola
• Nodorum blotch in wheat
• Plant disease webinar recording can now be viewed online

An Investigation Of Factors Affecting The Rooting Ability Of Hardwood Muscadine Cuttings And Genetic Diversity Of Wild And Cultivated Muscadine Grapes (Vitis Rotundifolia Michx.), Kenneth Buck

Graduate Theses and Dissertations

The muscadine (Vitis rotundifolia syn. Muscadinia rotundifolia) is a grape species native to the southeastern United States. Muscadines are one of three grape species in subgenus Muscadinia with a chromosome number of 2n=40 (V. rotundifolia, V. munsoniana, and V. popenoei), making them genetically distinct from the European wine and table grape (Vitis vinifera) and other species in subgenus Euvitis. Rooting hardwood cuttings from muscadine vines has traditionally been considered an exceptionally difficult task. Many previous studies observed almost no root formation, leading to a general consensus that muscadines should either be propagated by softwood cuttings or vegetative layering. However, the …

Economic Viability Of Weed Management Strategies In High-Tunnel Tomato, Gracie Morrison

Crop, Soil and Environmental Sciences Undergraduate Honors Theses

Cost-effective weed suppression is an important consideration for tomato growers. Growers often choose methods which minimize hand labor, as hand weeding can be prohibitively expensive. This project determined economic viability of high tunnel tomatoes treated with several methods of weed control, both organic and chemical. These methods included: 2-week hand weeding, 1-week hand weeding, preemergent, straw, landscape fabric, and untreated weedy control plots. These treatments were applied to randomized blocks in a high-tunnel. Weeding, planting, and harvest were all timed to determine labor and material costs of weed management strategy implementation. After harvest, marketable yield was weighed to determine revenue. …

Dicamba Tank Mixtures And Formulations And Their Effects On Sensitive Crops During Cleanout Procedures, Vinicius Velho

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The introduction of dicamba-tolerant (DT) soybeans (Glycine max L. Merr) and cotton (Gossypium hirsutum L) in 2017 provided an additional tool for herbicide resistant weeds management. In the subsequent years, off-target movement of dicamba allegedly caused damage to sensitive crops and vegetation.

Possible causes of off-target movement include tank contamination, physical drift, and volatility. Additional products, such as herbicides to control grass, are often added to tank with dicamba, which is used to control broadleaf weeds, to increase the spectrum of control and application efficiency. Dicamba products registered for DT crops require the use of drift reducing …

Winter Cover Crop Impacts On Weed Dynamics In Eastern And Central Nebraska, Elizabeth Ann Oys

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Reducing tillage in cropping systems causes weed management to be dependent on chemical and cultural methods for weed control. Over time, herbicide-resistant weeds have developed due to the continuous selection pressures from herbicides, particularly in the Midwest Corn Belt. Integrated weed management strategies, such as cover crops, can be used to mitigate some of these issues. Cover crops are primarily known for their soil health benefits, but there is evidence that cover crops can suppress weeds. However, less research has been done at the field-scale level to address cover crop impacts on the weed seedbank and aboveground weeds during the …

Regional Plant Community Differences In The Nebraska Sandhills, Travis Millikan

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The Nebraska Sandhills is very valuable to the state of Nebraska, representing one of the most in-tact and largest grassland ecosystems in temperate regions in the world. Rangeland managers must understand plant community dynamics across the Sandhills to better inform management decisions. The first objective of this study was to evaluate plant community variability on upland Sands ecological sites across different precipitation zones in the Nebraska Sandhills. The second objective of our study was to utilize the Rangeland Analysis Platform (RAP) to examine spatial and temporal variability in biomass production and cover on pastures of ranches analyzed in the first …

Exploration Of Genes Controlling Grain Yield Heterosis In Hybrid Wheat (Triticum Aestivum L.) Utilizing 3ʹ Rna Sequencing, Nichole Lynn Miller

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The implementation and future success of hybrid wheat (Triticum aestivum L.) is impacted by breeders’ inability to create consistent high yielding, high heterosis hybrids. This research addresses this problem by conducting an exploration of transcriptomes from hybrids and parent lines to determine what genes are active in heterotic or non-heterotic hybrids and how their level of expression can explain the phenotype of grain yield heterosis. Using hybrids that showed positive mid-parent heterosis (MPH), classified as heterotic in our study, and negative or no difference MPH hybrids, classified as non-heterotic, differentially expressed genes (DEGs) potentially related to heterosis and hybrid …

Pestfacts Wa Issue 03 - May 2022, Svetlana Micic, Dustin Severtson, Jean Galloway, Cindy L. Webster

PestFacts WA

PestFacts WA Issue 03 - May 2022 contents:

• Seeing chewing damage in sprayed canola crops but can’t find the culprit?
• Mites and lucerne flea are active
• Slaters
• Meet PestFacts WA team member – Svetlana Micic
• Field pea blackspot forecasts for WA are available online
• PestFacts WA podcast

Wayne E. Sabbe Arkansas Soil Fertility Studies 2021, Nathan A. Slaton

Arkansas Agricultural Experiment Station Research Series

Rapid technological changes in crop management and production require that the research efforts be presented in an expeditious manner. The contributions of soil fertility and fertilizers are major production factors in all Arkansas crops. The studies described within will allow producers to compare their practices with the university’s research efforts. Additionally, soil-test data and fertilizer sales are presented to allow comparisons among years, crops, and other areas within Arkansas.

Oestrogenic Subterranean Clover Guide. Identification And Remediation, Kevin J. Foster, Megan H. Ryan, Daniel R. Kidd

Bulletins 4000 -

Subterranean clover (subclover, Trifolium subterraneum L.) is an annual pasture legume that provides high quality feed for livestock. It is estimated to be sown over 30 million hectares across southern Australia, with cultivars developed for the low, medium and high rainfall zones. Unfortunately, some older cultivars contain high levels of phytoestrogen which can affect the reproductive system of sheep and cause other health issues. This became a significant issue for sheep producers from the 1940s as new land was cleared and sheep grazed subclover-dominant pastures. There was a collection of livestock issues observed and these were grouped together under the …

Chromosome-Level Thlaspi Arvense Genome Provides New Tools For Translational Research And For A Newly Domesticated Cash Cover Crop Of The Cooler Climates, Adam Nunn, Isaac Rodríguez-Arévalo, Zenith Tandukar, Katherine Anna Frels, Adrián Contreras-Garrido, Pablo Carbonell-Bejerano, Panpan Zhang, Daniela Ramos Cruz, Katharina Jandrasits, Christa Lanz, Anthony Brusa, Marie Mirouze, Kevin Dorn, David W. Galbraith, Brice A. Jarvis, John C. Sedbrook, Donald L. Wyse, Christian Otto, David Langenberger, Peter F. Stadler, Detlef Weigel, M. David Marks, James A. Anderson, Claude Becker, Ratan Chopra

Department of Agronomy and Horticulture: Faculty Publications

Thlaspi arvense (field pennycress) is being domesticated as a winter annual oilseed crop capable of improving ecosystems and intensifying agricultural productivity without increasing land use. It is a selfing diploid with a short life cycle and is amenable to genetic manipulations, making it an accessible field-based model species for genetics and epigenetics. The availability of a high-quality reference genome is vital for understanding pennycress physiology and for clarifying its evolutionary history within the Brassicaceae. Here, we present a chromosome-level genome assembly of var. MN106-Ref with improved gene annotation and use it to investigate gene structure differences between two accessions (MN108 …

Agricultural Intensification Can Help Protect The Amazon Forest And Reduce Global Warming / Protecting The Amazon Forest And Reducing Global Warming Via Agricultural Intensification, Fabio R. Marin, Alencar J. Zanon, Juan P. Monzon, José F. Andrade, Evandro H.F.M. Silva, Gean L. Richter, Luis A.S. Antolin, Bruna S.M.R. Ribeiro, Giovanna G. Ribas, Rafael Battisti, Alexandre B. Heinemann, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

The Amazon basin includes 550 M ha covered with rainforests, with 60% of this area being in Brazil. Conversion of rainforest for soybean production raises concerns about the degree to which Brazil can reconcile production and environmental goals. Here we investigated the degree to which intensification could help Brazil produce more soybean without further encroachment of the Amazon Forest. Our analysis shows that continuation of current trends in soybean yield and area would lead to conversion of additional 5.7 M ha of forests and savannas during the next 15 years, with an associated 2550 Mt of CO2eq released into the …

Climate Change And Management Impacts On Soybean N Fixation, Soil N Mineralization, N2O Emissions, And Seed Yield, Elvis F. Elli, Ignacio A. Ciampitti, Michael J. Castellano, Larry C. Purcell, Seth Naeve, Patricio Grassini, Nicolas C. La Menza, Luiz Moro Rosso, André F. De Borja Reis, Péter Kovács, Sotirios V. Archontoulis

Department of Agronomy and Horticulture: Faculty Publications

Limited knowledge about how nitrogen (N) dynamics are affected by climate change, weather variability, and crop management is a major barrier to improving the productivity and environmental performance of soybean-based cropping systems. To fill this knowledge gap, we created a systems understanding of agroecosystem N dynamics and quantified the impact of controllable (management) and uncontrollable (weather, climate) factors on N fluxes and soybean yields. We performed a simulation experiment across 10 soybean production environments in the United States using the Agricultural Production Systems sIMulator (APSIM) model and future climate projections from five global circulation models. Climate change (2020–2080) increased N …

Two Fingerprinting Sets For Humulus Lupulus Based On Kasp And Microsatellite Markers, Mandie Driskill, Katie Pardee, Kim E. Hummer, Jason D. Zurni, Keenan L. Amundsen, Annette Wiles, Claudia Wiedowi, Josef Patza, John A. Henningi, Nahla V. Bassili

Department of Agronomy and Horticulture: Faculty Publications

Verification of clonal identity of hop (Humulus lupulus L.) cultivars within breeding programs and germplasm collections is vital to conserving genetic resources. Accurate and economic DNA-based tools are needed in dioecious hop to confirm identity and parentage, neither of which can be reliably determined from morphological observations. In this study, we developed two fingerprinting sets for hop: a 9-SSR fingerprinting set containing high-core repeats that can be run in a single PCR reaction and a kompetitive allele specific PCR (KASP) assay of 25 single nucleotide polymorphisms (SNPs). The SSR set contains a sex-linked primer pair, HI-AGA7, that was used …

Re-Evaluation Of Late Season Action Thresholds And The Effect Of Seed Treatments On Early Season Colonization Of Threecornered Alfalfa Hopper, Spissistilus Festinus (Say), In Louisiana Soybean, Glycine Max (L) Merr, Tyler Ray Tagle Musgrove

LSU Master's Theses

Soybean, Glycine max (L.) Merr, is considered the most economically important oil and feed crop in the US and is grown on nearly 35,000,000 ha on an annual basis. Factors that limit yield include weed pressure, disease infection, and of particular interest to entomologists, insect herbivory. Soybean is targeted by a range of above and below ground pests which are primarily controlled by insecticides. Neonicotinoids are a recently popularized insecticide class that when applied as a seed treatment, can provide protection from early season pests. The most economically significant early season pest is threecornered alfalfa hopper, Spissistilus festinus (Say), whose …

Variation In Bacterial Community Structure Under Long-Term Fertilization, Tillage, And Cover Cropping In Continuous Cotton Production, Ning Duan, Lidong Li, Xiaolong Liang, Aubrey Fine, Jie Zhuang, Mark Radosevich, Sean M. Schaeffer

Department of Agronomy and Horticulture: Faculty Publications

Agricultural practices alter the structure and functions of soil microbial community. However, few studies have documented the alterations of bacterial communities in soils under long-term conservation management practices for continuous crop production. In this study, we evaluated soil bacterial diversity using 16S rRNA gene sequencing and soil physical and chemical properties within 12 combinations of inorganic N fertilization, cover cropping, and tillage throughout a cotton production cycle. Soil was collected from field plots of the West Tennessee Agriculture Research and Education Center in Jackson, TN, United States. The site has been under continuous cotton production for 38 years. A total …