Agricultural Science Commons^™

Combinatorial Control Of Yeast Fet4 Gene Expression By Iron, Zinc, And Oxygen, Brian M. Waters, David J. Eide

Department of Agronomy and Horticulture: Faculty Publications

Acquisition of metals such as iron, copper, and zinc by the yeast Saccharomyces cerevisiae is tightly regulated. High affinity uptake systems are induced under metal-limiting conditions to maintain an adequate supply of these essential nutrients. Low affinity uptake systems function when their substrates are in greater supply. The FET₄ gene encodes a low affinity iron and copper uptake transporter. FET₄ expression is regulated by several environmental factors. In this report, we describe the molecular mechanisms underlying this regulation. First, we found that FET₄ expression is induced in iron-limited cells by the Aft1 iron-responsive transcriptional activator. Second, FET …

Genetic Analysis Of Feed Quality And Seed Weight Of Sorghum Inbred Lines And Hybrids Using Analytical Methods And Nirs, C. Hicks, M. R. Tuinstra, Jeffrey F. Pedersen, F. E. Dowell, K. D. Kofoid

Department of Agronomy and Horticulture: Faculty Publications

Eight lines of grain sorghum and their F1 hybrids were evaluated for contents of crude protein (CP), fat (FAT), and starch (STA); protein digestibility (PD); and in vitro dry matter disappearance (IVDMD). The effect of seed weight (SW) on these traits and the potential use of near infrared reflectance spectroscopy (NIRS) to predict them also were investigated. The male lines included three normal-seeded lines (TX2737, TX435, and P954063) and two largeseeded lines (PL-1 and Eastin1). The female lines included commonU.S. seed parent lines (Wheatland, Redlan, and SA3042). The lines and their hybrids were grown under dryland conditions at Kansas State …

‘Forrest’ Resistance To The Soybean Cyst Nematode Is Bigenic: Saturation Mapping Of The Rhg1 And Rhg4 Loci, K. Meksem, P. Pantazopoulos, V. N. Njiti, D. L. Hyten, P. R. Arelli, D. A. Lightfoot

Department of Agronomy and Horticulture: Faculty Publications

Field resistance to cyst nematode (SCN) race 3 (Heterodera glycines I.) in soybean [Glycine max (L.) Merr.] cv ‘Forrest’ is conditioned by two QTLs: the underlying genes are presumed to include Rhg1 on linkage group G and Rhg4 on linkage group A2. A population of recombinant inbred lines (RILs) and two populations of near-isogenic lines (NILs) derived from a cross of Forrest × Essex were used to map the loci affecting resistance to SCN. Bulked segregant analysis, with 512 AFLP primer combinations and microsatellite markers, produced a high-density genetic map for the intervals carrying Rhg …

Genomic Regions That Underlie Soybean Seed Isoflavone Content, K. Meksem, V. N. Njiti, W. J. Banz, M. J. Iqbal, My. M. Kassem, David L. Hyten, J. Yuang, T. A. Winters, D. A. Lightfoot

Department of Agronomy and Horticulture: Faculty Publications

Soy products contain isoflavones (genistein, daidzein, and glycitein)that display biological effects when ingested by humans and animals, these effects are species, dose and age dependent. Therefore, the content and quality of isoflavones in soybeans is a key to their biological effect. Our objective was to identify loci that underlie isoflavone content in soybean seeds. The study involved 100 recombinant inbred lines (RIL)fr om the cross of ‘Essex’ by ‘Forrest,’ two cultivars that contrast for isoflavone content. Isoflavone content of seeds fromeach RIL was determined by high performance liquid chromatography (HPLC). The distribution of isoflavone content was continuous and unimodal. The …

Genetic Analysis Of Kafirins And Their Phenotypic Correlations With Feed Quality Traits, In Vitro Digestibility, And Seed Weight In Grain Sorghum, C. Hicks, S. R. Bean, G. L. Lookhart, Jeffrey F. Pedersen, K. D. Kofoid, M. R. Tuinstra

Department of Agronomy and Horticulture: Faculty Publications

Twenty-three entries of grain sorghum (Sorghum bicolor (L.) Moench), including eight inbred lines (five males and three females) and 15 hybrids, were evaluated to determine the proportion of γ, αII, and β-αI-kafirins and their association with contents of crude protein, fat, and starch; protein digestibility; in vitro dry matter disappearance; and seed weight. The male lines included three normal-seeded lines (TX2737, TX435, and P954063) and two large-seeded lines (Eastin1 and PL-1). Female lines consisted of three common U.S. seed parent lines (Wheatland, Redlan, and SA3042). The lines and their hybrids were grown under dryland conditions at two locations in …

Seed Physiology, Production & Technology: Germination, Emergence, And Yield Of 20 Plant-Color, Seed-Color Near-Isogenic Lines Of Grain Sorghum, Jeffrey F. Pedersen, J. J. Toy

Department of Agronomy and Horticulture: Faculty Publications

Although there is growing demand for sorghum [Sorghum bicolor (L.) Moench] with white seed and tan plant color, there is limited information on the overall agronomic fitness of sorghum with these characters. A set of experiments was conducted to evaluate the combined effects of plant color and seed color on sorghum germination, emergence, and agronomic performance. Twenty near-isogenic lines with red seed/tan plant (RT), red seed/purple plant (RP), white seed/ tan plant (WT), white seed/purple plant (WP) phenotypes were tested under field and laboratory conditions. Plant color X seed color interactions were not significant. Purple plant color phenotypes had higher …

High-Throughput Genotyping For A Polymorphism Linked To Soybean Cyst Nematode Resistance Gene Rhg4 By Using TaqmanTm Probes, Khalid Meksem, Eliza Ruben, David L. Hyten, Michael E. Schmidt, David A. Lightfoot

Department of Agronomy and Horticulture: Faculty Publications

An individual soybean breeder can generate over one hundred thousand new genotypes each year. The efficiency of selection in these populations could be improved if these genotypes were effectively screened with one DNA marker that identified an important gene, and if laboratory throughput was high and costs were low. Our aim was to develop a rapid genotyping procedure for resistance to the soybean cyst nematode. A high-throughput genotyping method was developed with fluorogenic probes to distinguish between two insertion polymorphisms in alleles of an AFLP marker that is located about 50 kbp from the Rhg4 gene candidate. The assay uses …

Conversion Of Aflp Bands Into High-Throughput Dna Markers, K. Meksem, E. Ruben, D. L. Hyten, K. Triwitayakorn, D. A. Lightfoot

Department of Agronomy and Horticulture: Faculty Publications

The conversion of AFLP bands into polymorphic sequence-tagged-site (STS) markers is necessary for high-throughput genotype scoring. Technical hurdles that must be overcome arise from genome complexity (particularly sequence duplication), from the low-molecular- weight nature of the AFLP bands and from the location of the polymorphism within the AFLP band. We generated six STS markers from ten AFLP bands (four AFLPs were from co-dominant pairs of bands) in soybean (Glycine max). The markers were all linked to one of two loci, rhg1 on linkage group G and Rhg4 on linkage group A2, that confer resistance to the soybean cyst nematode (Heterodera …

Two Large-Insert Soybean Genomic Libraries Constructed In A Binary Vector: Applications In Chromosome Walking And Genome Wide Physical Mapping, K. Meksem, K. Zobrist, E. Ruben, D. L. Hyten, T. Quanzhou, H-B. Zhang, D. A. Lightfoot

Department of Agronomy and Horticulture: Faculty Publications

Large DNA insert libraries in binary T-DNA vectors can assist in the isolation of the gene(s) under-lying a quantitative trait locus (QTL). Binary vectors facilitate the transfer of large-insert DNA fragments containing a QTL from E. coli to Agrobacterium sp. and then to plants. We constructed two soybean large-insert libraries from cv. Forrest in the pCLD04541 (V41) binary vector after partial digestion of genomic high-molecular-weight DNA with BamHI or HindIII. The libraries contain 76,800 clones with an average insert size of 125 kb, and therefore represent 9.5-fold haploid genome equivalents. Colony hybridization using a chloroplast-specific probe infers that …

Before You Say Yes: A Planning Guide For Speakers, Charles A. Francis, Heidi Carter, Cris Carusi, James W. King

Department of Agronomy and Horticulture: Faculty Publications

We need guidelines to help us decide whether to accept invitations to speak, whether to a class on campus or a special interest group outside. As educators and workshop organizers, we could also use suggestions on how to approach potential speakers. This article describes a single-page format that can be used to guide the planning process. Essential elements include contact information, location and organization of the activity, audience, learning goals, expected content, conclusions, and evaluation. Use of this planning sheet can give organization to an often haphazard process of planning, and enhance the potential of achieving the learning goals of …

Ethylene Production, Cluster Root Formation, And Localization Of Iron(Iii) Reducing Capacity In Fe Deficient Squash Roots, Brian M. Waters, Dale G. Blevins

Department of Agronomy and Horticulture: Faculty Publications

Dicots and non-graminaceous monocots have the ability to increase root iron(III) reducing capacity in response to iron (Fe) deficiency stress. In squash (Cucurbita pepo L.) seedlings, Fe(III) reducing capacity was quantified during early vegetative growth. When plants were grown in Fe-free solution, the Fe(III) reducing capacity was greatly elevated, reached peak activity on day 4, then declined through day 6. Root ethylene production exhibited a temporal pattern that closely matched that of Fe(III) reducing capacity through day 6. On the 7th day of Fe deficiency, cluster root morphology developed, which coincided with a sharp increase in the root Fe(III) …

Crop Quality And Utilization: A Twelve-Hour In Vitro Procedure For Sorghum Grain Feed Quality Assessment, Jeffrey F. Pedersen, Todd Milton, R. A. Mass

Department of Agronomy and Horticulture: Faculty Publications

Improvedmethods for assessing cereal crop feed value are a prerequisite for the genetic improvement of sorghum [Sorghum bicolor (L.) Moench] feed value. Rate of starch digestion is now commonly believed to be the limiting factor in sorghum utilization by cattle (Bos taurus). However, techniques to assess this trait are not useful to sorghum breeders because of high labor inputs, lab error associated with starch measurement, and need for high numbers of replications. The objective of this study was to develop a simple technique capable of identifying differences in digestion between sorghum and corn (Zea mays L.) …

Effect Of Leaf Phosphorus And Potassium Concentration On Chlorophyll Meter Reading In Rice, Shaobing Peng, Arnel L. Sanico, Felipe V. Garcia, Rebecca C. Laza, Romeo M. Visperas, Josue P. Descalsota, Kenneth G. Cassman

Department of Agronomy and Horticulture: Faculty Publications

Chlorophyll meter (SPAD) is a convenient tool to estimate leaf nitrogen (N) concentration of rice plants. There is no information on the effects of leaf phosphorus (P) and potassium (K) concentration on SP AD readings and on the relationship between SPAD values and leaf N concentration in the literature. In 1996 dry season, cv IR72 was grown at the International Rice Research Institute (IRRI) and the Philippine Rice Research Institute (PhilRice) under various N, P and K fertilizer combinations. SPAD measurements were made on the topmost fully expanded leaves at mid-tillering and panicle initiation. The leaves were then detached, dried …

Loci Controlling Resistance To High Plains Virus And Wheat Streak Mosaic Virus In A B73 × Mo17 Population Of Maize, A. Marçon, S. M. Kaeppler, S. G. Jensen, L. Senior, C. Stuber

Department of Agronomy and Horticulture: Faculty Publications

High Plains disease has the potential to cause significant yield loss in susceptible corn (Zea mays L.) and wheat (Triticum aestivum L.) genotypes, especially in the central and western USA. The primary causal agent, High Plains virus (HPV), is vectored by wheat curl mite (WCM; Aceria tossicheila Keifer), which is also the vector of wheat streak mosaic virus (WSMV). In general, the two diseases occur together as a mixed infection in the field. The objective of this research was to characterize the inheritance of HPV and WSMV resistance using B73 (resistant to HPV and WSMV) × Mo17 (moderately …

Notes: Evaluation Of A Filter Bag System For Ndf, Adf, And Ivdmd Forage Analysis, Kenneth P. Vogel, Jeffrey F. Pedersen, Steven D. Masterson, John J. Toy

Department of Agronomy and Horticulture: Faculty Publications

A new method of determining in vitro dry matter digestibility (IVDMD) as recently developed in which the digestion is conducted with the forage samples in filter bags. Our objective was to compare the filter bag and conventional IVDMD analysis methods using smooth bromegrass (Bromus inermis Leyss.), switchgrass (Panicum virgatum L.), and forage sorghum [Sorghum bicolor (L.) Moench] samples. In addition, the filter bag analysis systems for determining non-sequential neutral and acid detergent fiber (NDF and ADF), respectively, were compared with the non-sequential conventional analysis systems. In the filter bag systems, the forage samples are sealed in filter bags and the …

Measurement Of Sorghum Stalk Strength Using The Missouri-Modified Electronic Rind Penetrometer, Jeffrey F. Pedersen, J. J. Toy

Department of Agronomy and Horticulture: Faculty Publications

Resistance to lodging is critical in sorghum [Sorghum bicolor (L.) Moench] grown for grain, yet adequate tools for plant breeders to assess this character at or before anthesis have not been developed. The objective of this study was to evaluate whether an electronic penetrometer previously shown to be an effective tool for measuring stalk strength in maize (Zea mays L.) could be usedd to differentiate among grain sorghum hybrids. Entries in three commercial grain sorghum hybrid trials were evaluated for rind penetrometer resistance (RPR) of the peduncle, the lower stalk anthesis and the lower stalk at maturity. Actual …

Growth Traits Among Sorghum Genotypes In Response To Aluminum, J. H. Bernal, R. B. Clark

Department of Agronomy and Horticulture: Faculty Publications

Aluminum (Al) has many detrimental effects on plant growth, and shoots and roots are normally affected differently. A study was conducted to determine differences among sorghum [Sorghum bicolor (L.) Moench] genotypes with broad genetic backgrounds for growth traits of plants grown at 0,200,400,600, and 800 uM Al in nutrient solutions (pH 4.0). Genotypes were categorized into "Al-sensitive", "intermediate Al-tolerant", "Al-tolerant", and SC 283 (an Al-tolerant standard). As Al increased, shoot and root dry matter (DM), net main axis root length (NMARL), and total root length (TRL) became lower than controls (0 Al). Aluminum toxicity and/or nutrient deficiency symptoms become …

Soil Temperature And Fumigation Effects On Plant Phosphorus Uptake And Related Microbial Properties, Dennis L. Mccallister, L. A. Jawson, M. D. Jawson

Department of Agronomy and Horticulture: Faculty Publications

Early season problems with growth of corn (Zea mays L.) under cool, wet conditions prompted a study of the effects of soil and environmental conditions on mineralization and plant uptake of phosphorus (P). Our objective was to determine the effect of soil test P, temperature, and soil fumigation on soil P availability and uptake during early corn growth. Corn was grown in growth chambers at temperatures of 14°C or 25°C. Soils were a high-P Hastings silty clay loam (fine, montmorillonitic, mesic Udic Argiustoll) and a low-P Sharpsburg clay loam (fine, montmorillonitic, mesic Typic Argiudoll). Plants grew for up to …

Notes: Forage Yield, Quality, And Fertility Of Sorghum X Sudan Grass Hybrids In A1 And A3 Cytoplasm, Jeffrey F. Pedersen, J. J. Toy

Department of Agronomy and Horticulture: Faculty Publications

Currently, no information is available comparing the agronomic performance of A1 and A3 cytoplasms in sorghum x sudangrass [Sorghumbi color (L.) Moench] hybrids. The objectives of this study were to compare the effects of A1 and A3 cytoplasm on the maturity, fertility, height, forage yield, and forage quality of sorghum × sudangrass hybrids. In 1989, pollen from a bulk of eight sudangrass populations was used to pollinate four sorghum lines that had been male-sterilized in both A1 and A3 cytoplasm. Hybrids were grown at the Univ. of Nebraska Field Laboratory Ithaca, NE, in 1990 and 1991, in a split-plot …

Molecular And Functional Characterization Of A Novel Low-Affinity Cation Transporter (Lct1) In Higher Plants, Daniel P. Schachtman, Raman Kumar, Julian I. Schroeder, Ellen L. Marsh

Department of Agronomy and Horticulture: Faculty Publications

The transport of cations across membranes in higher plants plays an essential role in many physiological processes including mineral nutrition, cell expansion, and the transduction of environmental signals. In higher plants the coordinated expression of transport mechanisms is essential for specialized cellular processes and for adaptation to variable environmental conditions. To understand the molecular basis of cation transport in plant roots, a Triticum aestivum cDNA library was used to complement a yeast mutant deficient in potassium (K⁺) uptake. Two genes were cloned that complemented the mutant: HKT1 and a novel cDNA described in this report encoding a cation …

Application Of The Single Kernel Wheat Characterization Technology To Sorghum Grain, Jeffrey F. Pedersen, C. R. Martin, F. C. Felker, J. L. Steele

Department of Agronomy and Horticulture: Faculty Publications

A single kernel wheat characterization system (SKWCS) was recently developed by the USDA, ARS Grain Marketing Research Laboratory and is currently being marketed by Perten Instruments North America, Inc. This device has been shown to accurately measure individual seed hardness, moisture, and size of wheat. The objective of this study was to determine if the SKWCS technology could be applied to the measurement of sorghum grain. Grains from 64 sorghum plots grown at Mead, NE in 1992 were characterized using a prototype SKWCS at the USDA, ARS Grain Marketing Research Laboratory. Problems encountered were primarily associated with the single kernel …

Annual Forages: New Approaches For C-4 Forages, Jeffrey F. Pedersen

Department of Agronomy and Horticulture: Faculty Publications

The current agricultural paradigm in the U.S. is heavily biased towards the production and marketing of crops as commodities. This paradigm is kept in place by grain handling and marketing infrastructure, as well as government farm programs, designed for crops as commodities. Sorghum (Sorghum bicolor L. Moench) and maize (Zea mays L.) grown for grain certainly fit into this current paradigm.

A new approach to agricultural production and marketing, identity preserved products, is gaining in importance. This is made possible through new technologies and markets demanding products designed specifically for their needs. Examples of investment in identity preserved …

Media Effects On Phenotype Of Callus Cultures Initiated From Photoperiod-Insensitive, Elite Inbred Sorghum Lines, H. F. Kaeppler, Jeffrey F. Pedersen

Department of Agronomy and Horticulture: Faculty Publications

Sorghum (Sorghum bicolor L. Moench) is a crop of worldwide agronomic importance. Routine production of high quality (friable, embryogenic, fast growing) callus cultures is fundamental to tissue culture based genetic study and improvement of sorghum. Genotype by culture medium interactions for sorghum callus growth and morphology have been previously reported. The objective of this study was to identify tissue culture media that would support high quality callus growth across photoperiod insensitive, relatively elite genotypes. Explants from immature inflorescences of 11 sorghum genotypes were cultured on 6 tissue culture media of differing composition. After 3 and 5 months in culture, calli …

Germplasm And Cultivar Development, M. D. Casler, Jeffrey F. Pedersen, G. C. Eizenga, S. D. Stratton

Department of Agronomy and Horticulture: Faculty Publications

Cool-season forage grasses have evolved, and continue to evolve, in natural ecosystems subject to environmental factors both in the presence and absence of human influences. The literature often lacks facts describing the evolution and domestication of forage grasses. Furthermore, the literature on this subject mainly deals with evolution of species in the broad scope, i.e., on a scale of hundreds of thousands or millions or years. Thus, some of our conclusions are necessarily speculative and are highly subject to the nature of the research that has been reported. We describe the forces of selection that act upon cool-season forage grasses …

Breeding Sorghum And Pearl Millet For Forage And Fuel, Jeffrey F. Pedersen

Department of Agronomy and Horticulture: Faculty Publications

Sorghum [Sorghum bicolor (L.) Moench] and pearl millet [Pennisetum glaucum (L.) R. Br.] are unique species in their ability to be used in many forage llivestock system roles. Such flexibility has made prioritizing breeding objectives difficult and has even contributed to contradictory opinions on appropriate forage breeding objectives. Few breeding projects identified in the USDA-ARS, USDA-CREES, or at ICRISAT had forage sorghum or forage pearl millet as their sole research assignment. In the United States, it can be argued that breeding resources committed to forage sorghum improvement are probably declining. A new forage sorghum and forage pearl millet …

In Vitro Starch Disappearance Procedure Modifications, C. J. Richards, Jeffrey F. Pedersen, R. A. Britton, R. A. Stock, C. R. Krehbiel

Department of Agronomy and Horticulture: Faculty Publications

Four in vitro experiments evaluated the effects of ruminal fluid inoculum:artificial saliva ratios,

grinder type, grind size, and diet of ruminal fluid donor on in vitro starch disappearance. Experiment 1 examined rates of starch disappearance and coefficients of determination obtained by linear regression of starch disappearance using five grain sorghum (Sorghum bicolur (L.) Moench) lines, a corn (Zeu muys L.) control, and a wheat (Triticum aestivum L.) control. Grains were incubated for 4, 8, 12, 16, and 20 h with inoculum varying in proportion of ruminal fluid and artificial saliva ( l:l, 1:2, 1:3, and 1:4). In …

An Automated Plot Harvest System For Use With A Commercial Forage Harvester, Jeffrey F. Pedersen, Kenneth J. Moore

Department of Agronomy and Horticulture: Faculty Publications

This automated harvest system is based on minimal modification of currently available commercial forage harvesters. Using 6.8 m plots separated by 0.75 m alleys, a single operator can harvest, finely chop, and collect wet plot weights of forage sorghum [Sorghum bicolor (L.) Moench] or pearl millet [Pennisetum glaucum (L.) R. Hr.] in <1 min per plot. Harvested material is deposited in a pile in the center of each plot. Subsamples for moisture and quality analysis can easily and safely be obtained from the pile.

Brown· Midrib Sorghum Silage For Midlactation Dairy Cows, R. J. Grant, S. G. Haddad, K. J. Moore, Jeffrey F. Pedersen

Department of Agronomy and Horticulture: Faculty Publications

Brown midrib sorghum silage was compared with alfalfa, corn, and normal sorghum silages for its effect on performance, ruminal metabolism, and digestive kinetics of Holstein dairy cows in midlactation. Twelve cows averaging 90 ± 5 DIM were assigned to one of four diets in replicated 4 X 4 Latin squares with 4-wk periods. Additionally, 3 ruminally fistulated cows (95 ± 20 DIM) were assigned to the same diets in a 3x 4 Youden square for measurement of ruminal characteristics. Diets were fed as isonitrogenous TMR that contained 65% silage (OM basis). The DMl was greater for the corn and brown …

Purification Of The Major Soybean Leaf Acid Phosphatase That 1s Increased By Seed-Pod Removal, Paul E. Staswick, Chuck Papa, Jing-Feng Huang, Yoon Rhee

Department of Agronomy and Horticulture: Faculty Publications

Fruit removal for 5 weeks after flowering increased acid phosphatase activity 10-fold in soybean (Glycine max 1. Merr. vai Hobbit) leaves compared with normal seed-pod-bearing plants. The major acid phosphatase activity in leaves was purified over 2700-fold, yielding a single polypeptide of 51 kD with a specific activity of 1353 units/mg protein using p-nitrophenylphosphate as the substrate. lsoelectric focusing demonstrated that the purified protein co-migrated with a majority of the activity that increased in leaves following seed-pod removal. lmmunoblot analysis demonstrated that at least part of the increased activity was dueto an increased abundance of the phosphatase protein. In situ …

Models To Predict Yield Loss Due To Weeds In Rice Ecosystems, John L. Lindquist

Department of Agronomy and Horticulture: Faculty Publications

Yield loss models have been developed and evaluated for irrigated rice ecosystems with respect to effects of Echinochloa crusgalli. Simple regression models that give the relation between yield loss and weed density or relative leaf area are discussed with respect to their practical value in weed management in rice. More complex eco-physiological process models have been developed and used for rice ecosystems as well. Such models can be useful as a tool in research, whereas more simple approaches are needed for practical application in weed management.