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Department of Agronomy and Horticulture: Faculty Publications

Articles 931 - 960 of 1038

Full-Text Articles in Agricultural Science

Highly Variable Patterns Of Linkage Disequilibrium In Multiple Soybean Populations, D. L. Hyten, Ik-Young Choi, Qijian Song, Randy C. Shoemaker, Randall L. Nelson, Jose M. Costa, James E. Specht, P. B. Cregan Jan 2007

Highly Variable Patterns Of Linkage Disequilibrium In Multiple Soybean Populations, D. L. Hyten, Ik-Young Choi, Qijian Song, Randy C. Shoemaker, Randall L. Nelson, Jose M. Costa, James E. Specht, P. B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

Prospects for utilizing whole-genome association analysis in autogamous plant populations appear promising due to the reported high levels of linkage disequilibrium (LD). To determine the optimal strategies for implementing association analysis in soybean (Glycine max L. Merr.), we analyzed the structure of LD in three regions of the genome varying in length from 336 to 574 kb. This analysis was conducted in four distinct groups of soybean germplasm: 26 accessions of the wild ancestor of soybean (Glycine soja Seib. et Zucc.); 52 Asian G. max Landraces, the immediate results of domestication from G. soja; 17 Asian Landrace …


Ethylene Involvement In The Regulation Of The H+-Atpase Csha1 Gene And Of The New Isolated Ferric Reductase Csfro1 And Iron Transporter Csirt1 Genes In Cucumber Plants, Brian M. Waters, Carlos Lucena, Francisco J. Romera, Gena G. Jester, April N. Wynn, Carmen L. Rojas, Esteban Alcántara, Rafael Pérez-Vicente Jan 2007

Ethylene Involvement In The Regulation Of The H+-Atpase Csha1 Gene And Of The New Isolated Ferric Reductase Csfro1 And Iron Transporter Csirt1 Genes In Cucumber Plants, Brian M. Waters, Carlos Lucena, Francisco J. Romera, Gena G. Jester, April N. Wynn, Carmen L. Rojas, Esteban Alcántara, Rafael Pérez-Vicente

Department of Agronomy and Horticulture: Faculty Publications

In previous works using ethylene inhibitors and precursors, it has been shown that ethylene participates in the regulation of several Fe-deficiency stress responses by Strategy I plants, such as enhanced ferric reductase activity, rhizosphere acidification, and subapical root hair development. Furthermore, recent evidence suggests that ethylene could regulate the expression of both the ferric reductase and the iron transporter genes of Strategy I plants by affecting the FER (or FER-like) transcription factor. Recently, two H+-ATPase genes have been isolated from cucumber roots, CsHA1 and CsHA2. CsHA1 is up-regulated under Fe deficiency while CsHA2 is constitutively expressed. In …


Fertility Restoration Of The Sorghum A3 Male-Sterile Cytoplasm Through A Sporophytic Mechanism Derived From Sudangrass, Hoang V. Tang, Jeffrey F. Pedersen, Christine D. Chase, Daryl R. Pring Jan 2007

Fertility Restoration Of The Sorghum A3 Male-Sterile Cytoplasm Through A Sporophytic Mechanism Derived From Sudangrass, Hoang V. Tang, Jeffrey F. Pedersen, Christine D. Chase, Daryl R. Pring

Department of Agronomy and Horticulture: Faculty Publications

Fertility restoration of sorghum [Sorghum bicolor (L.) Moench] lines carrying the IS1112C (A3 group) male-sterile cytoplasm has been documented as a two-gene gametophytic mechanism involving complementary action of restoring alleles designated Rf3 and Rf4, as derived from IS1112C. Fertility restoration capability has also been reported from sudangrass (S. bicolor subsp. drummondii) populations. We describe characteristics of a fertility restoration system derived from sudangrass, in which male-sterile individuals were observed at high frequency in backcross and F2-F3 segregating populations. Segregation analyses were consistent with a sporophytic restoration system involving two complementary genes. Pollen iodine staining in fertile …


Cell Wall Proteome In The Maize Primary Root Elongation Zone. Ii. Region-Specific Changes In Water Soluble And Lightly Ionically Bound Proteins Under Water Deficit1[W][Oa], Jinming Zhu, Sophie Alvarez, Ellen L. Marsh, Mary E. Lenoble, In-Jeong Cho, Mayandi Sivaguru, Sixue Chen, Henry T. Nguyen, Yajun Wu, Daniel P. Schachtman, Robert E. Sharp Jan 2007

Cell Wall Proteome In The Maize Primary Root Elongation Zone. Ii. Region-Specific Changes In Water Soluble And Lightly Ionically Bound Proteins Under Water Deficit1[W][Oa], Jinming Zhu, Sophie Alvarez, Ellen L. Marsh, Mary E. Lenoble, In-Jeong Cho, Mayandi Sivaguru, Sixue Chen, Henry T. Nguyen, Yajun Wu, Daniel P. Schachtman, Robert E. Sharp

Department of Agronomy and Horticulture: Faculty Publications

Previous work on the adaptation of maize (Zea mays) primary roots to water deficit showed that cell elongation is maintained preferentially toward the apex, and that this response involves modification of cell wall extension properties. To gain a comprehensive understanding of how cell wall protein (CWP) composition changes in association with the differential growth responses to water deficit in different regions of the elongation zone, a proteomics approach was used to examine water soluble and loosely ionically bound CWPs. The results revealed major and predominantly region-specific changes in protein profiles between well-watered and water-stressed roots. In total, 152 …


Publishing Ltd Whole-Plant Mineral Partitioning Throughout The Life Cycle In Arabidopsis Thaliana Ecotypes Columbia, Landsberg Erecta, Cape Verde Islands, And The Mutant Line Ysl1ysl3, Brian M. Waters, Michael A. Grusak Jan 2007

Publishing Ltd Whole-Plant Mineral Partitioning Throughout The Life Cycle In Arabidopsis Thaliana Ecotypes Columbia, Landsberg Erecta, Cape Verde Islands, And The Mutant Line Ysl1ysl3, Brian M. Waters, Michael A. Grusak

Department of Agronomy and Horticulture: Faculty Publications

• Minimal information exists on whole-plant dynamics of mineral flow through Arabidopsis thaliana or on the source tissues responsible for mineral export to developing seeds. Understanding these phenomena in a model plant could help in the development of nutritionally enhanced crop cultivars. • A whole-plant partitioning study, using sequential harvests, was conducted to characterize growth and mineral concentrations and contents of rosettes, cauline leaves, stems, immature fruit, mature fruit hulls, and seeds of three WT lines (Col-0, Ler, and Cvi) and one mutant line (Col-0::ysl1ysl3). • Shoot mineral content increased throughout the life cycle for all minerals, although tissue-specific mineral …


Array-Based Genotyping And Expression Analysis Of Barley Cv. Maythorpe And Golden Promise, Harkamal Walia, Clyde Wilson, Pascal Condamine, Abdelbagi M. Ismail, Jin Xu, Xinping Cui, Timothy J. Close Jan 2007

Array-Based Genotyping And Expression Analysis Of Barley Cv. Maythorpe And Golden Promise, Harkamal Walia, Clyde Wilson, Pascal Condamine, Abdelbagi M. Ismail, Jin Xu, Xinping Cui, Timothy J. Close

Department of Agronomy and Horticulture: Faculty Publications

Background: Golden Promise is a salt-tolerant spring barley closely related to Maythorpe. Salt tolerance in Golden Promise has been attributed to a single mutation at the Ari-e locus (on 5H) resulting from irradiation of Maythorpe. Golden Promise accumulates lower shoot Na+ compared to Maythorpe when growing under saline conditions. This study focused on elucidating the genetic basis and mechanisms involved in this difference. Results: The level of polymorphism between the two genotypes was explored using the Barley1 GeneChip for single feature polymorphisms (SFPs) and an oligonucleotide pool assay for single nucleotide polymorphisms (SNPs). Polymorphism analyses revealed three haplotype blocks …


Evaluation Of The Single Kernel Characterization System (Skcs) For Measurement Of Sorghum Grain Attributes, S. R. Bean, O. K. Chung, M. R. Tuinstra, Jeffrey F. Pedersen, J. Erpelding Jan 2006

Evaluation Of The Single Kernel Characterization System (Skcs) For Measurement Of Sorghum Grain Attributes, S. R. Bean, O. K. Chung, M. R. Tuinstra, Jeffrey F. Pedersen, J. Erpelding

Department of Agronomy and Horticulture: Faculty Publications

The single kernel characterization system (SKCS) has been widely used in the wheat industry, and SKCS parameters have been linked to end-use quality in wheat. The SKCS has promise as a tool for evaluating sorghum grain quality. However, the SKCS was designed to analyze wheat, which has a different kernel structure from sorghum. To gain a better understanding of the meaning of SKCS predictions for grain sorghum, individual sorghum grains were measured for length, width, thickness (diameter), and weight by laboratory methods and by the SKCS. SKCS predictions for kernel weight and thickness were highly correlated to laboratory measurements. However, …


Soybean Cultivars Resulted From More Recombination Events Than Unselected Lines In The Same Population, T. R. Stefaniak, D. L. Hyten Jr., V. R. Pantalone, A. Klarer, T. W. Pfeiffer Jan 2006

Soybean Cultivars Resulted From More Recombination Events Than Unselected Lines In The Same Population, T. R. Stefaniak, D. L. Hyten Jr., V. R. Pantalone, A. Klarer, T. W. Pfeiffer

Department of Agronomy and Horticulture: Faculty Publications

The selection of superior adapted cultivars has contributed to the doubling of soybean [Glycine max (L.) Merr.] yields in the USA since 1930. Genetic variation was required for this selection to be effective. The objective of this study was to evaluate the importance of homologous chromosome meiotic recombination in the creation of soybean cultivars. A set of 10 adapted high-yielding cultivars selected from the cross ‘Williams’ × ‘Essex’ was com-pared with a set of 156 random recombinant inbred lines (RILs) from the same population. Crossover events were identified using 143 simple sequence repeat (SSR) markers span-ning all 20 soybean …


Impacts Of Genetic Bottlenecks On Soybean Genome Diversity, D. L. Hyten, Qijian Song, Youlin Zhu, Ik-Young Choi, Randall L. Nelson, Jose M. Costa, James E. Specht, Randy C. Shoemaker, Perry B. Cregan Jan 2006

Impacts Of Genetic Bottlenecks On Soybean Genome Diversity, D. L. Hyten, Qijian Song, Youlin Zhu, Ik-Young Choi, Randall L. Nelson, Jose M. Costa, James E. Specht, Randy C. Shoemaker, Perry B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

Soybean has undergone several genetic bottlenecks. These include domestication in Asia to produce numerous Asian landraces, introduction of relatively few landraces to North America, and then selective breeding over the past 75 years. It is presumed that these three human-mediated events have reduced genetic diversity. We sequenced 111 fragments from 102 genes in four soybean populations representing the populations before and after genetic bottlenecks. We show that soybean has lost many rare sequence variants and has undergone numerous allele frequency changes throughout its history. Although soybean genetic diversity has been eroded by human selection after domestication, it is notable that …


Ethylene Could Influence Ferric Reductase, Iron Transporter, And H+-Atpase Gene Expression By Affecting Fer (Or Fer-Like) Gene Activity, Carlos Lucera, Brian M. Waters, Francisco Javier Romera, María José García, María Morales, Esteban Alcántara, Rafael Pérez-Vicente Jan 2006

Ethylene Could Influence Ferric Reductase, Iron Transporter, And H+-Atpase Gene Expression By Affecting Fer (Or Fer-Like) Gene Activity, Carlos Lucera, Brian M. Waters, Francisco Javier Romera, María José García, María Morales, Esteban Alcántara, Rafael Pérez-Vicente

Department of Agronomy and Horticulture: Faculty Publications

In previous works, it has been shown, by using ethylene inhibitors and precursors, that ethylene could participate in the regulation of the enhanced ferric reductase activity of Fe-deficient Strategy I plants. However, it was not known whether ethylene regulates the ferric reductase gene expression or other aspects related to this activity. This paper is a study of the effects of ethylene inhibitors and precursors on the expression of the genes encoding the ferric reductases and iron transporters of Arabidopsis thaliana (FRO2 and IRT1) and Lycopersicon esculentum (= Solanum lycopersicum) (FRO1 and IRT1) plants. The effects …


Application Of Machine Learning In Snp Discovery, Lakshmi K. Matukumalli, John J. Grefenstette, David L. Hyten, Ik-Young Choi, Perry B. Cregan, Curtis P. Van Tassell Jan 2006

Application Of Machine Learning In Snp Discovery, Lakshmi K. Matukumalli, John J. Grefenstette, David L. Hyten, Ik-Young Choi, Perry B. Cregan, Curtis P. Van Tassell

Department of Agronomy and Horticulture: Faculty Publications

Background: Single nucleotide polymorphisms (SNP) constitute more than 90% of the genetic variation, and hence can account for most trait differences among individuals in a given species. Polymorphism detection software PolyBayes and PolyPhred give high false positive SNP predictions even with stringent parameter values. We developed a machine learning (ML) method to augment PolyBayes to improve its prediction accuracy. ML methods have also been successfully applied to other bioinformatics problems in predicting genes, promoters, transcription factor binding sites and protein structures. Results: The ML program C4.5 was applied to a set of features in order to build a SNP classifier …


Snp-Phage – High Throughput Snp Discovery Pipeline, Lakshmi K. Matukumalli, John J. Grefenstette, David L. Hyten, Ik-Young Choi, Perry B. Cregan, Curt P. Van Tassell Jan 2006

Snp-Phage – High Throughput Snp Discovery Pipeline, Lakshmi K. Matukumalli, John J. Grefenstette, David L. Hyten, Ik-Young Choi, Perry B. Cregan, Curt P. Van Tassell

Department of Agronomy and Horticulture: Faculty Publications

Background: Single nucleotide polymorphisms (SNPs) as defined here are single base sequence changes or short insertion/deletions between or within individuals of a given species. As a result of their abundance and the availability of high throughput analysis technologies SNP markers have begun to replace other traditional markers such as restriction fragment length polymorphisms (RFLPs), amplified fragment length polymorphisms (AFLPs) and simple sequence repeats (SSRs or microsatellite) markers for fine mapping and association studies in several species. For SNP discovery from chromatogram data, several bioinformatics programs have to be combined to generate an analysis pipeline. Results have to be stored in …


Chemical Composition And Response To Dilute-Acid Pretreatment And Enzymatic Saccharification Of Alfalfa, Reed Canarygrass, And Switchgrass, Bruce S. Dien, Hans-Joachim G. Jung, Kenneth P. Vogel, Michael D. Casler, Joann F. S. Lamb, Loren Iten, Robert C. Mitchell, Gautum Sarath Jan 2006

Chemical Composition And Response To Dilute-Acid Pretreatment And Enzymatic Saccharification Of Alfalfa, Reed Canarygrass, And Switchgrass, Bruce S. Dien, Hans-Joachim G. Jung, Kenneth P. Vogel, Michael D. Casler, Joann F. S. Lamb, Loren Iten, Robert C. Mitchell, Gautum Sarath

Department of Agronomy and Horticulture: Faculty Publications

Alfalfa stems, reed canarygrass, and switchgrass; perennial herbaceous species that have potential as biomass energy crops in temperate regions; were evaluated for their bioconversion potential as energy crops. Each forage species was harvested at two or three maturity stages and analyzed for carbohydrates, lignin, protein, lipid, organic acids, and mineral composition. The biomass samples were also evaluated for sugar yields following pretreatment with dilute sulfuric followed by enzymatic saccharification using a commercial cellulase preparation. Total carbohydrate content of the plants varied from 518 to 655 g kg-1 dry matter (DM) and cellulose concentration from 209 to 322 g kg …


Mutations In Arabidopsis Yellow Stripe-Like1 And Yellow Stripe-Like3 Reveal Their Roles In Metal Ion Homeostasis And Loading Of Metal Ions In Seeds, Brian M. Waters, Heng-Hsuan Chu, Raymond J. Didonato, Louis A. Roberts, Robynn B. Eisley, Brett Lahner, David E. Salt, Elsbeth L. Walker Jan 2006

Mutations In Arabidopsis Yellow Stripe-Like1 And Yellow Stripe-Like3 Reveal Their Roles In Metal Ion Homeostasis And Loading Of Metal Ions In Seeds, Brian M. Waters, Heng-Hsuan Chu, Raymond J. Didonato, Louis A. Roberts, Robynn B. Eisley, Brett Lahner, David E. Salt, Elsbeth L. Walker

Department of Agronomy and Horticulture: Faculty Publications

Here, we describe two members of the Arabidopsis (Arabidopsis thaliana) Yellow Stripe-Like (YSL) family, AtYSL1 and AtYSL3. The YSL1 and YSL3 proteins are members of the oligopeptide transporter family and are predicted to be integral membrane proteins. YSL1 and YSL3 are similar to the maize (Zea mays) YS1 phytosiderophore transporter (ZmYS1) and the AtYSL2 iron (Fe)-nicotianamine transporter, and are predicted to transport metal-nicotianamine complexes into cells. YSL1 and YSL3 mRNAs are expressed in both root and shoot tissues, and both are regulated in response to the Fe status of the plant. β-Glucuronidase reporter expression, driven by …


Effect Of Control Plot Density, Control Plot Arrangement, And Assumption Of Random Or Fixed Effects On Nonreplicated Experiments For Germplasm Screening Using Spatial Models, Boi Sebolai, Jeffrey F. Pedersen, D. B. Marx, D. L. Boykin Jan 2005

Effect Of Control Plot Density, Control Plot Arrangement, And Assumption Of Random Or Fixed Effects On Nonreplicated Experiments For Germplasm Screening Using Spatial Models, Boi Sebolai, Jeffrey F. Pedersen, D. B. Marx, D. L. Boykin

Department of Agronomy and Horticulture: Faculty Publications

Early generation selection experiments typically involve several hundred to thousands of lines. Various systematic and statistical techniques have been developed to increase effectiveness and efficiencies in such experiments, including the development and application of spatial statistical models. In this study, mixed model equations were used to provide least squares means (LSMEANs) and best linear unbiased predictors (BLUPs) and compare selection effectiveness and efficiencies to observed (Y) and true values in simulated experiments varying in size (10 X 10, 20 X 20 and 30 X 30 grids), control plots densities (0, 5, 10, 20, and 50%), control plot arrangements (high, medium, …


Establishing Effects Of Application Of Swine Manure On Crop Leaf Damage To Growing Crops, Charles Shapiro, University Of Nebraska-Lincoln Jan 2004

Establishing Effects Of Application Of Swine Manure On Crop Leaf Damage To Growing Crops, Charles Shapiro, University Of Nebraska-Lincoln

Department of Agronomy and Horticulture: Faculty Publications

Swine manure from a below barn storage facility was applied to growing corn and soybeans to determine phytotoxic effects. The manure had an electrical conductivity of around 20 mmhos/cm and was diluted for treatment at full, half, quarter and none. The manure mixtures were applied at a rate of 0.5 in/acre using a procedure that wet the foliage three times in a 15-minute time span. Manure mixtures were applied at V7 and V14 for corn and V3 and R1 for soybeans. Phytotoxic effects were shown at the high rate for both crops, but soybeans were killed at the early application …


Seed Quality Qtl In A Prominent Soybean Population, D. L. Hyten Jr., V. R. Pantalone, C. E. Sams, A. M. Saxon, D. Landau-Ellis, T. R. Stefaniak, M. E. Schmidt Jan 2004

Seed Quality Qtl In A Prominent Soybean Population, D. L. Hyten Jr., V. R. Pantalone, C. E. Sams, A. M. Saxon, D. Landau-Ellis, T. R. Stefaniak, M. E. Schmidt

Department of Agronomy and Horticulture: Faculty Publications

Soybean [Glycine max (L.) Merr.] is a versatile crop due to its multitude of uses as a high protein meal and vegetable oil. Soybean seed traits such as seed protein and oil concentration and seed size are important quantitative traits. The objective of this study was to identify representative protein, oil, and seed size quantitative trait loci (QTL) in soybean. A recombinant inbred line (RIL) population consisting of 131 F6-derived lines was created from two prominent ancestors of North American soy-beans (‘Essex’ and ‘Williams’) and the RILs were grown in six environments. One hundred simple sequence repeat (SSR) markers …


Molecular Mapping And Identification Of Soybean Fatty Acid Modifier Quantitative Trait Loci, D. L. Hyten Jr., Vincent R. Pantalone, Arnold M. Saxton, Michael E. Schmidt, Carl E. Sams Jan 2004

Molecular Mapping And Identification Of Soybean Fatty Acid Modifier Quantitative Trait Loci, D. L. Hyten Jr., Vincent R. Pantalone, Arnold M. Saxton, Michael E. Schmidt, Carl E. Sams

Department of Agronomy and Horticulture: Faculty Publications

Altering FA content in soybean [Glycine max (L.) Merr.] oil for improved functionality is a research goal of many soybean breeders. Several of the genes that alter palmitic, stearic, oleic, linoleic, and linolenic acids are modifier genes with small effects, causing these FA traits to act as quantitative traits. The objective of this study was to identify modifier FA quantitative trait loci (QTL) in soybean. A recombinant inbred line population was created from two prominent ancestors of currently avail-able U.S. cultivars (Essex and Williams) and grown in five environments. One hundred simple se-quence repeat markers spaced throughout the genome …


Predicting Phenological Development In Winter Wheat, Qingwu Xue, Albert Weiss, P. Stephen Baenziger Jan 2004

Predicting Phenological Development In Winter Wheat, Qingwu Xue, Albert Weiss, P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

Accurate prediction of phenological development is important in the winter wheat Triticum aestivum agroecosystem. From a practical perspective, applications of pesticides and fertilizers are carried out at specific phenological stages. In crop-simulation modeling, the prediction of yield components (kernel number and kernel weight) and wheat-grain yield relies on accurate prediction of phenology. In this study, a nonlinear multiplicative model by Wang & Engel (WE) for predicting phenological development in differing winter wheat cultivars was evaluated using data from a 3 yr field experiment. In the vegetative phase (emergence to anthesis) the daily development rate (r) was simulated based on the …


Using Multi-Spectral Imagery To Evaluate Corn Grown Under Nitrogen And Drought Stressed Conditions, Shannon L. Osborne, James S. Schepers, Mike R. Schlemmer Jan 2004

Using Multi-Spectral Imagery To Evaluate Corn Grown Under Nitrogen And Drought Stressed Conditions, Shannon L. Osborne, James S. Schepers, Mike R. Schlemmer

Department of Agronomy and Horticulture: Faculty Publications

The in-season estimation of crop stresses which have the potential of adversely affecting crop yield and/or quality could allow producers to make in-season management decisions to correct for the particular stress. A field study was conducted to evaluate the use of multispectral imagery for estimating corn (Zea mays L.) grain yield, in-season biomass and nitrogen (N) concentration under varying N and drought stresses. The experiment was a split-plot design with three replications using a factorial arrangement of treatments. Three irrigation (whole-plot) treatments included dry land, irrigation based on 0.5, and full evapotranspiration (ET). Sub-plot treatments included five N …


Expression Of A Putative Flavonoid 3'-Hydroxylase In Sorghum Mesocotyls Synthesizing 3-Deoxyanthocyanidin Phytoalexins, Jayanand Boddu, Catherine Svabek, Rajandeep Sekhon, Amanda Gevens, Ralph L. Nicholson, A. Daniel Jones, Jeffrey F. Pedersen, David L. Gustine, Surinder Chopra Jan 2004

Expression Of A Putative Flavonoid 3'-Hydroxylase In Sorghum Mesocotyls Synthesizing 3-Deoxyanthocyanidin Phytoalexins, Jayanand Boddu, Catherine Svabek, Rajandeep Sekhon, Amanda Gevens, Ralph L. Nicholson, A. Daniel Jones, Jeffrey F. Pedersen, David L. Gustine, Surinder Chopra

Department of Agronomy and Horticulture: Faculty Publications

In sorghum, ingress of Cochliobolus heterostrophus stimulates the synthesis of 3-deoxyanthocyanidins that act as phytoalexins. Apigeninidin and luteolinidin are two major phytoalexins induced in the first 24 h after infection. In an attempt to understand genetic regulation of the biosynthesis of sorghum phytoalexins, we isolated a differentially expressed partial cDNA. Characterization and comparison showed that this cDNA sequence corresponds to a putative flavonoid 3’-hydroxylase. Full length sequence characterization allowed us to establish that the sorghum putative f3’h cDNA encodes a peptide of 517 amino acids that has domains conserved among cytochrome P450 proteins functioning in …


Implementation Of A Mitochondrial Mutator, Sally Mackenzie, Ricardo Vilela Abdelnoor Jan 2004

Implementation Of A Mitochondrial Mutator, Sally Mackenzie, Ricardo Vilela Abdelnoor

Department of Agronomy and Horticulture: Faculty Publications

Plant MSH1 polynucleotides and polypeptides are described. Also described are methods for the use and modulation of such MSH1 polynucleotides and polypeptides.


Mapping The Fas Locus Controlling Stearic Acid Content In Soybean, M. M. Spencer, V. R. Pantalone, E. J. Meyer, D. Landau-Ellis, D. L. Hyten Jr. Feb 2003

Mapping The Fas Locus Controlling Stearic Acid Content In Soybean, M. M. Spencer, V. R. Pantalone, E. J. Meyer, D. Landau-Ellis, D. L. Hyten Jr.

Department of Agronomy and Horticulture: Faculty Publications

Increasing the stearic acid content to improve soybean [Glycine max (L) Merr] oil quality is a desirable breeding objective for food-processing applications. Although a saturated fatty acid, stearic acid has been shown to reduce total levels of blood cholesterol and offers the potential for the production of solid fat products (such as margarine) without hydrogenation. This would result in the reduction of the level of trans fat in food products and alleviate some current health concerns. A segregating F2 population was developed from the cross between Dare, a normal stearic acid content cultivar, and FAM94-41, a high stearic …


Registration Of Rn582 Sorghum Germplasm Line, J. F. Pedersen, J. J. Toy Jan 2003

Registration Of Rn582 Sorghum Germplasm Line, J. F. Pedersen, J. J. Toy

Department of Agronomy and Horticulture: Faculty Publications

RN582 sorghum [Sorghum bicolor (L.)Moench] germplasm line (Reg. no. GP-591, PI 628277) was developed jointly by the USDA-ARS and the Agricultural Research Division, Institute of Agriculture and Natural Resources, University of Nebraska, and was released in September 2001.

RN582 is an S6 selection from the cross (RTx430 ms3ms3X E 35-1) X E 35-1. RTx430 was developed and released by the Texas Agricultural Experiment Station (Miller, 1984) and was provided to this project containing the nuclear male sterility gene ms3 by A.B. Maunder in 1988. E 35-1 is an Ethiopian land race with white …


Single-Nucleotide Polymorphisms In Soybean, Y. L. Zhu, Q. J. Song, D. L. Hyten, C. P. Van Tassel, L. K. Matukumalli, D. R. Grimm, S. M. Hyatt, E. W. Fickus, N. D. Young, P. B. Cregan Jan 2003

Single-Nucleotide Polymorphisms In Soybean, Y. L. Zhu, Q. J. Song, D. L. Hyten, C. P. Van Tassel, L. K. Matukumalli, D. R. Grimm, S. M. Hyatt, E. W. Fickus, N. D. Young, P. B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

Single-nucleotide polymorphisms (SNPs) provide an abundant source of DNA polymorphisms in a number of eukaryotic species. Information on the frequency, nature, and distribution of SNPs in plant genomes is limited. Thus, our objectives were (1) to determine SNP frequency in coding and noncoding soybean (Glycine max L. Merr.) DNA sequence amplified from genomic DNA using PCR primers designed to complete genes, cDNAs, and random genomic sequence; (2) to characterize haplotype variation in these sequences; and (3) to provide initial estimates of linkage disequilibrium (LD) in soybean. Approximately 28.7 kbp of coding sequence, 37.9 kbp of noncoding perigenic DNA, and …


Greenhouse Gas Emissions And Soil Indicators Four Years After Manure And Compost Applications, Daniel Ginting, Anabayan Kessavalou, Bahman Eghball, John W. Doran Jan 2003

Greenhouse Gas Emissions And Soil Indicators Four Years After Manure And Compost Applications, Daniel Ginting, Anabayan Kessavalou, Bahman Eghball, John W. Doran

Department of Agronomy and Horticulture: Faculty Publications

Understanding how carbon, nitrogen, and key soil attributes affect gas emissions from soil is crucial for alleviating their undesirable residual effects that can linger for years after termination of manure and compost applications. This study was conducted to evaluate the emission of soil CO2, N2O, and CH4 and soil C and N indicators four years after manure and compost application had stopped. Experimental plots were treated with annual synthetic N fertilizer (FRT), annual and biennial manure (MN1 and MN2, respectively), and compost (CP1 and CP2, respectively) from 1992 to 1995 based on removal of 151 …


Forage Yield And Economic Losses Associated With The Brown-Midrib Trait In Sudangrass, M. D. Casler, Jeffrey F. Pedersen, D. J. Undersander Jan 2003

Forage Yield And Economic Losses Associated With The Brown-Midrib Trait In Sudangrass, M. D. Casler, Jeffrey F. Pedersen, D. J. Undersander

Department of Agronomy and Horticulture: Faculty Publications

Brown-midrib genes increase digestibility due to reduced lignification in sudangrass, Sorghum bicolor subsp. drummondii (Nees ex Steud.) de Wet & Harlan. Brown-midrib lines are known to be low in forage yield potential, but this reduction in forage yield has not been previously quantified. The objectives of this study were to quantify the increase in forage quality and decrease in forage yield and to provide an economic assessment of this dichotomy. Piper and Greenleaf (normal leaves) were compared with their brown-midrib counterparts and four highly selected brown-midrib (FG) lines at two locations for 2 yr. Brown-midrib lines averaged 9.0% lower in …


Registration Of ‘Ne422t’ Winter Triticale, P. Stephen Baenziger, K. P. Vogel Jan 2003

Registration Of ‘Ne422t’ Winter Triticale, P. Stephen Baenziger, K. P. Vogel

Department of Agronomy and Horticulture: Faculty Publications

NE422T triticale (X Triticosecale Wittmack) (Reg. no CV-27, PI 629028) was developed cooperatively by the Nebraska Agricultural Experiment Station and the USDA-ARS. It was jointly released in 2001 by the developing institutions. NW422T was selected from the cross ‘Trical’/‘UB-UW26’ where Trical is most likely ‘Trical 100’ (a forage triticale developed by Resource Seed Inc., a subsidiary of Goldsmith Seed Company, Gilroy, CA) and UB-UW26 is an unknown winter triticale germplasm line given to the breeding program in the 1980s.The cross was made in 1990. The F1 generation was grown in the greenhouse in 1990-1991. The F2 and F …


Characterization Of Fro1, A Pea Ferric-Chelate Reductase Involved In Root Iron Acquisition, Brian M. Waters, Dale G. Blevins, David J. Eide May 2002

Characterization Of Fro1, A Pea Ferric-Chelate Reductase Involved In Root Iron Acquisition, Brian M. Waters, Dale G. Blevins, David J. Eide

Department of Agronomy and Horticulture: Faculty Publications

To acquire iron, many plant species reduce soil Fe(III) to Fe(II) by Fe(III)-chelate reductases embedded in the plasma membrane of root epidermal cells. The reduced product is then taken up by Fe(II) transporter proteins. These activities are induced under Fe deficiency. We describe here the FRO1 gene from pea (Pisum sativum), which encodes an Fe(III)-chelate reductase. Consistent with this proposed role, FRO1 shows similarity to other oxidoreductase proteins, and expression of FRO1 in yeast conferred increased Fe(III)-chelate reductase activity. Furthermore, FRO1 mRNA levels in plants correlated with Fe(III)-chelate reductase activity. Sites of FRO1 …


Accumulation Of Microbial Biomass Within Particulate Organic Matter Of Aging Golf Greens, Mine Kerek, Rhae A. Drijber, William L. Powers, Robert C. Shearman, Roch E. Gaussoin, Anne Streich May 2002

Accumulation Of Microbial Biomass Within Particulate Organic Matter Of Aging Golf Greens, Mine Kerek, Rhae A. Drijber, William L. Powers, Robert C. Shearman, Roch E. Gaussoin, Anne Streich

Department of Agronomy and Horticulture: Faculty Publications

Microbial biomass (MB) is a key variable controlling soil organic matter dynamics in soil. Currently, there is little information on the amount and significance of MB in highly managed golf greens. Our objective was to determine the amount and distribution of MB within soil structural components of golf greens and its relationship to the location of organic substrates. During 1996, 47 greens were sampled from 12 golf courses within Nebraska (USA). Microbial biomass, determined as extractable lipid phosphate on field-moist soils, increased linearly with age of green (Y = 19.39 + 3.54x; r2 = 0.87, P = 0.001). In …