Physiology Commons^™

Morphological And Moisture Availability Controls Of The Leaf Area-To-Sapwood Area Ratio: Analysis Of Measurements On Australian Trees, Henrique Furstenau Togashi, Iain Colin Prentice, Bradley John Evans, David Ian Forrester, Paul Drake, Paul Feikema, Kim Brooksbank, Derek Eamus, Daniel Taylor

Natural Resources Research Articles

1. The leaf area-to-sapwood area ratio (LA:SA) is a key plant trait that links photosynthesis to transpiration. The pipe model theory states that the sapwood cross-sectional area of a stem or branch at any point should scale isometrically with the area of leaves distal to that point. Optimization theory further suggests that LA:SA should decrease toward drier climates. Although acclimation of LA:SA to climate has been reported within species, much less is known about the scaling of this trait with climate among species.
2. We compiled LA:SA measurements from 184 species of Australian evergreen angiosperm trees. The pipe model was …

Physiological Variation Of Garry Oak (Quercus Garryana) Seedlings To Drought Stress, Matthew A. Merz

All Master's Theses

The purpose of this study was to determine physiological differences in drought response among Garry oak (Quercus garryana Douglas ex Hook. [Fagaceae]) seedlings that grow in distinct populations in Washington state, in order to aid in restoration efforts by informing growers of the potential differences between the acorn collection sites. Acorns from six Washington populations east of the Cascades, as well as one population from Whidbey Island, were collected and grown in containers under controlled conditions. The plants were assessed with and without moderate and severe drought stress induced by withholding water. The most extreme differences in photosynthetic characteristics …

Dirigent Domain-Containing Protein Is Part Of The Machinery Required For Formation Of The Lignin-Based Casparian Strip In The Root, Prashant S. Hosmani, Takehiro Kamiya, John Danku, Sadaf Naseer, Niko Geldner, Mary Lou Guerinot, David Salt

Dartmouth Scholarship

The endodermis acts as a "second skin" in plant roots by providing the cellular control necessary for the selective entry of water and solutes into the vascular system. To enable such control, Casparian strips span the cell wall of adjacent endodermal cells to form a tight junction that blocks extracellular diffusion across the endodermis. This junction is composed of lignin that is polymerized by oxidative coupling of monolignols through the action of a NADPH oxidase and peroxidases. Casparian strip domain proteins (CASPs) correctly position this biosynthetic machinery by forming a protein scaffold in the plasma membrane at the site where …

Scfkmd Controls Cytokinin Signaling By Regulating The Degradation Of Type-B Response Regulators, Hyo Jung Kim, Yi-Hsuan Chiang, Joseph J. Kieber, G. Eric Schaller

Dartmouth Scholarship

Cytokinins are plant hormones that play critical roles in growth and development. In Arabidopsis, the transcriptional response to cytokinin is regulated by action of type-B Arabidopsis response regulators (ARRs). Although central elements in the cytokinin signal transduction pathway have been identified, mechanisms controlling output remain to be elucidated. Here we demonstrate that a family of F-box proteins, called the kiss me deadly (KMD) family, targets type-B ARR proteins for degradation. KMD proteins form an S-phase kinase-associated PROTEIN1 (SKP1)/Cullin/F-box protein (SCF) E3 ubiquitin ligase complex and directly interact with type-B ARR proteins. Loss-of-function KMD mutants stabilize type-B ARRs and exhibit an …

The Impact Of Gut Passage By Binturongs (Arctictus Binturong) On Seed Germination, Christina P. Colon, Ahimsa Campos-Arceiz

Publications and Research

Binturongs (Arctictis binturong) are the largest of Asian civets and, due to their highly frugivorous diet, are expected to play an important role in seed dispersal processes. To study the effect of binturong gut passage on seed viability, we fed 10 captive binturongs with fruits of longan (Dimocarpus longan), papaya (Carica papaya) and chiku (Manilkara zapota), collected the seeds they defaecated, and planted these to determine seed germination rate and time. Of the defaecated seeds, 90.4% passed through binturong gut intact in under nine hours, and 99.4% passed in under 33 hours. Chiku seeds had the highest germination rate (35.7% …

Template-Based Structure Prediction And Classification Of Transcription Factors In Arabidopsis Thaliana, Tao Lu, Yuedong Yang, Bo Yao, Song Liu, Yaoqi Zhou, Chi Zhang

School of Biological Sciences: Faculty Publications

Transcription factors (TFs) play important roles in plants. However, there is no systematic study of their structures and functions of most TFs in plants. Here, we performed template-based structure prediction for all TFs in Arabidopsis thaliana, with their full-length sequences as well as C-terminal and N-terminal regions. A total of 2,918 model structures were obtained with a high confidence score. We find that TF families employ only a smaller number of templates for DNA-binding domains (DBD) but a diverse number of templates for transcription regulatory domains (TRD). Although TF families are classified according to DBD, their sizes have a significant …

Poisonous Rangeland Plants In San Luis Obispo County, Sara Litten, Amanda Ou

Animal Science

Poisonous Rangeland Plants in San Luis Obispo County is a comprehensive educational guide to rangeland plants that are toxic to domestic livestock. This guide begins with an exploration of how the biological systems are affected by the poisonous plant toxins. The biochemistry behind these toxins is included in the discussion. Next, reference material for fourteen plants that inhabit San Luis Obispo County is provided. This information includes specific toxins found in poisonous plants, affected animals, symptoms of poisoning, stages of growth, lethal dose, and distribution of the plant in California. This section of the guide is filled with helpful photos …

Goatsrue (Galega Officinalis) Seed Biology, Control, And Toxicity, Michelle Oldham

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Goatsrue is an introduced perennial plant that has proven to have great invasive potential, leading to its classification as a noxious weed in many states and at the federal level. This research focused on seed biology, herbicide control, and toxic dynamics of goatsrue. Physical dormancy of mature goatsrue seed was tested through scarification using sulfuric acid with exposures of up to 60 minutes resulting in 100% germination. Comparison of dormancy for 26-year-old and 6-month-old goatsrue seed indicated aged seeds had reduced dormancy levels compared to newly harvested seeds, but had similar viability. Goatsrue seedling emergence was inversely related to burial …

The Leaf Ionome As A Multivariable System To Detect A Plant's Physiological Status, Ivan R. Baxter, Olga Vitek, Brett Lahner, Balasubramaniam Muthukumar, Monica Borghi, Joe Morrissey, Mary Lou Guerinot, David E. Salt

Dartmouth Scholarship

The contention that quantitative profiles of biomolecules contain information about the physiological state of the organism has motivated a variety of high-throughput molecular profiling experiments. However, unbiased discovery and validation of biomolecular signatures from these experiments remains a challenge. Here we show that the Arabidopsis thaliana (Arabidopsis) leaf ionome, or elemental composition, contains such signatures, and we establish statistical models that connect these multivariable signatures to defined physiological responses, such as iron (Fe) and phosphorus (P) homeostasis. Iron is essential for plant growth and development, but potentially toxic at elevated levels. Because of this, shoot Fe concentrations are …

Systems Approach Identifies An Organic Nitrogen-Responsive Gene Network That Is Regulated By The Master Clock Control Gene Cca1, Rodrigo A. Gutierrez, Trevor L. Stokes, Karen Thum, Xiaodong Xu, Mariana Obertello, Manpreet S. Katari, Milos Tanurdzic, Alexis Dean, Damion C. Nero, C Robertson Mcclung, Gloria M. Coruzzi

Dartmouth Scholarship

Understanding how nutrients affect gene expression will help us to understand the mechanisms controlling plant growth and development as a function of nutrient availability. Nitrate has been shown to serve as a signal for the control of gene expression in Arabidopsis. There is also evidence, on a gene-by-gene basis, that downstream products of nitrogen (N) assimilation such as glutamate (Glu) or glutamine (Gln) might serve as signals of organic N status that in turn regulate gene expression. To identify genome-wide responses to such organic N signals, Arabidopsis seedlings were transiently treated with ammonium nitrate in the presence or absence of …

A Subset Of Arabidopsis Ap2 Transcription Factors Mediates Cytokinin Responses In Concert With A Two-Component Pathway, Aaron M. Rashotte, Michael G. Mason, Claire E. Hutchison, Fernando J. Ferreira, G. Eric Schaller, Joseph J. Kieber

Dartmouth Scholarship

The plant hormone cytokinin regulates numerous growth and developmental processes. A signal transduction pathway for cytokinin has been elucidated that is similar to bacterial two-component phosphorelays. In Arabidopsis, this pathway is comprised of receptors that are similar to sensor histidine kinases, histidine-containing phosphotransfer proteins, and response regulators (ARRs). There are two classes of response regulators, the type-A ARRs, which act as negative regulators of cytokinin responses, and the type-B ARRs, which are transcription factors that play a positive role in mediating cytokinin-regulated gene expression. Here we show that several closely related members of the Arabidopsis AP2 gene family of …

Apparent Digestibility In Lamas (Lama Glama), Fed With Brazilian Grass And Wheat In The C.E.A.C., William Edson Velez Contacayo

Theses and Dissertations

Considering the activity of introducing genetic resources with a high potential for yield, and with a wide adaptation range, it is possible to strengthen the cattle production system, through the production of adequate forage in quality, and quantity. Brazilian grass was introduced to Bolivia in 1974 for demonstrating excellent forage characteristics, and great adaptation qualities to the different ecosystems of the Andes. The material was introduced through the Experimental Station of Patacamaya, with their material supplied through the Experimental Station of Obonuco (Colombia). The following study was conducted at the Agropecuary Experimental Center of Condori, located 49 km. north of …

Energy Value In Llamas (Lama Glama) Fed With Alfalfa Hay (Modicago Sativa) And Barley (Hordeum Vulgare) For Apparent Digestibility In Vivo In The National Camelid Germplasm Bank (Ceac), Edwin Gonzalo Ugarte Huanca

Theses and Dissertations

In this experiment, we used four male llamas that were three to four years of age from the Khara race. They were divided into two ad libitum feeding groups. The digestible energy (ED) was determined using samples that were sent to the laboratory. These samples were derived from a conventional in vivo assay using the method of total fecal collection in order to determine the difference between energy consumed and energy excreted. Metabolizable energy was calculated by deducting digestible energy, energy loss in the urine and energy loss in the gases (methane). Urinary energy was determined through the measurement of …

Graminicolous Fungi Of Virginia: Fungi In Collections 1995-2003, Curtis W. Roane

Virginia Journal of Science

Fungus-grass associations recognized in Virginia from 1995 to 2003 are recorded. Many associations are new to the United States (59), eastern United States (2), and Virginia (21); others extend the known distribution for those previously discovered. These reports contribute to the natural history of Virginia.

Bird Use Of Riparian Vegetation Along The Truckee River, Califonia And Nevada, Suellen Lynn, Michael L. Morrison, Amy J. Kuenzi, Jennifer C. C. Neale, Benjamin N. Sacks, Robin Hamlin, Linnea S. Hall

Great Basin Naturalist

The Truckee River in California and Nevada is subject to diverse water regimes and a corresponding variety of flow rates. Original riparian vegetation has been altered by these variable flow rates and by a variety of human uses resulting in loss of native riparian vegetation from its historic extent. We conducted bird surveys along the Truckee River during spring 1993 to (1) determine relationships between birds and the present vegetation; (2) determine the importance of different vegetation types to sensitive bird species that have declined recently in the western United States due to competition from exotic plant species, cowbird ( …

Gap Analysis Of The Vegetation Of The Intermountain Semi-Desert Ecoregion, David M. Stoms, Frank W. Davis, Kenneth L. Driese, Kelly M. Cassidy, Michael P. Murray

Great Basin Naturalist

A conservation gap analysis was conducted for the Intermountain Semi-Desert ecoregion to assess the representation of land-cover types within areas managed primarily for biodiversity objectives. Mapped distributions of plant communities were summarized by land-management status categories. The total amount of land permanently protected in the ecoregion is

Winter Macroinvertebrate Communities In Two Montane Wyoming Streams, Christopher M. Pennuto, Frank Denoyelles Jr., Mark A. Conrad, Frank A. Vertucci, Sharon L. Dewey

Great Basin Naturalist

Macroinvertebrate communities were examined on 4 winter dates over a 4-yr period in 2 high-altitude Rocky Mountain streams to document overwintering assemblages potentially experiencing spring acid pulses. Taxa richness values were comparable to other published lists for alpine and montane stream systems despite the fact that most literature reflected summer collections. Mean benthic density ranged from 1406 to 19,734 organisms/m², and drift rates ranged from 0 to 1740 organisms/100 m³. Benthic collections showed higher taxa richness than drift collections while the Ephemeroptera and Plecoptera occurred in greater proportions in drift than in benthos. The Nemouridae (Plecoptera), …

Randomly Amplified Polymorphic Dna Analysis (Rapd) Of Artemisia Subgenus Tridentatae Species And Hybrids, E. Durant Mcarthur, Joann Mudge, Renée Van Buren, W. Ralph Andersen, Stewart C. Sanderson, David G. Babbel

Great Basin Naturalist

Species of Artemisia (subgenus Tridentatae) dominate much of western North America. The genetic variation that allows this broad ecological adaptation is facilitated by hybridization and polyploidization. Three separate studies were performed in this group using randomly amplified polymorphic DNA (RAPD). Fifty-seven 10-mer primers generated nearly 400 markers from genomic DNA obtained from leaf tissue. These studies were (1) a measure of the variability of plants within and between populations and between subspecies using 5 A. tridentata ssp. wyomingensis populations, 2 A. cana ssp. cana populations, and 1 A. cana ssp. viscidula population; (2) an examination of the hypothesis that …

Density, Distribution, And Habitat Of Flammulated Owls In Idaho, Craig Groves, Terry Frederick, Glenn Frederick, Eric Atkinson, Melonie Atkinson, Jay Shepherd, Gregg Servheen

Great Basin Naturalist

From 1990 to 1992 we surveyed for Flammulated Owls (Otus flammeolus) in 3 areas in Idaho: Salmon National Forest (SNF), Payette National Forest and adjacent Hells Canyon National Recreation Area (PNF-HCNRA), and Nez Perce National Forest (NPNF). We also collected and summarized information on all historic and modern records of Flammulated Owls in Idaho. Flammulated Owls were detected on 65% of 68 routes (2–16 km in length) surveyed at densities ranging from 0.04 to 1.25 singing males/40 ha. Owls were detected on survey routes as early as 10 May and as late as 23 July. Mean percent canopy …

Erratum

Great Basin Naturalist

No abstract provided.

Diplostomiasis In Native And Introduced Fishes From Yellowstone Lake, Wyoming, Victor H. Inchausty, Michael Foutz, Richard A. Heckmann, Claudete Ruas, Paulo Ruas

Great Basin Naturalist

Totals of 101 native Yellowstone cutthroat (Oncorhynchus clarki bouvieri), 27 introduced lake trout (Salvelinus namaycush), and 40 introduced longnose sucker (Catostomus catostomus) from Yellowstone Lake, Wyoming, USA, were examined for eye flukes. Metacercariae of the trematode fluke Diplostomum were in vitreous humor and/or lens of 94% of Yellowstone cutthroat trout, 92% of lake trout, and 78% of longnose sucker. Longnose sucker had 7% prevalence of infection in both lens and vitreous humor of metacercariae, while Yellowstone cutthroat trout had 3% and lake trout 8%. Diplostomum spathaceum was in lens tissue of 5% of infected …

Natural Variability Of Vegetation, Soils, And Physiography In The Bristlecone Pine Forest Of The Rocky Mountains, Brigitte M. Ranne, William L. Baker, Tom Andrews, Michael G. Ryan

Great Basin Naturalist

Pinus aristata Engelm. forest vegetation in Colorado was studied to determine vegetation composition and the relationship between vegetation and environment. Species percent cover, tree size class, and environmental variables were recorded for 49 plots. Previously collected data for 4 plots from New Mexico were included. Environmental variables included latitude, longitude, elevation, slope, aspect, topographic position, parent material, percent rock cover, mean rock size, litter depth, estimated plot age class, and evidence of anthropogenic disturbance. Soils were analyzed for texture, depth, and percent carbon and nitrogen. Pinus aristata foliage was analyzed for percent nitrogen and phosphorus. Direct and indirect gradient analyses …

Helminths Of The Southwestern Toad, Bufo Microscaphus, Woodhouse's Toad, Bufo Woodhousii (Bufonidae), And Their Hybrids From Central Arizona, Stephen R. Goldberg, Charles R. Bursey, Keith B. Malmos, Brian K. Sullivan, Hay Cheam

Great Basin Naturalist

The gastrointestinal tracts, lungs, and urinary bladders from 77 Bufo microscaphus, 61 Bufo woodhousii, and 8 of their hybrids were examined for helminths. One species of trematode (Glypthelmins quieta), 1 species of cestode (Distoichometra bufonis), and 5 species of nematodes (Aplectana incerta, A. itzocanensis, Rhabdias americanus, Physaloptera sp., and Physocephalus sp.) were found. The greatest prevalence (41%) and mean intensity (231.7) were recorded for Aplectana incerta in Bufo woodhousii. It appears hybrids harbor fewer parasites than either parent species.

Oochoristica Scelopori (Cestoda: Linstowiidae) In A Grassland Population Of The Bunch Grass Lizard, Sceloporus Scalaris (Phrynosomatidae), From Arizona, Stephen R. Goldberg, Charles R. Bursey, Chris T. Mcallister, Hobart M. Smith, Quynh A. Truong

Great Basin Naturalist

No abstract provided.

Effects Of Douglas-Fir Foliage Age Class On Western Spruce Budworm Oviposition Choice And Larval Performance, Kimberly A. Dodds, Karen M. Clancy, Kathryn J. Leyva, David Greenberg, Peter W. Price

Great Basin Naturalist

The western spruce budworm (Choristoneura occidentalis Freeman) prefers to feed on flushing buds and current-year needles of Douglas-fir (Pseudotsuga menziesii [Mirb.] Franco). Budworm larvae will not typically consume older age classes of needles unless all current-year foliage is depleted. We tested the following null hypotheses: (1) budworm larvae can feed on foliage with a wide range of qualities (i.e., current 1-, 2-, or 3-year-old needles) without measurable effects on fitness; and (2) budworm adults do not show any oviposition preference linked to the age of the foliage they fed on as larvae. We used both laboratory and field …

Selecting Wilderness Areas To Conserve Utah's Biological Diversity, Diane W. Davidson, William D. Newmark, Jack W. Sites Jr., Dennis K. Shiozawa, Eric A. Rickart, Kimball T. Harper, Robert B. Keiter

Great Basin Naturalist

Congress is currently evaluating the wilderness status of Bureau of Land Management (BLM) public lands in Utah. Wilderness areas play many important roles, and one critical role is the conservation of biological diversity. We propose that objectives for conserving biodiversity on BLM lands in Utah be to (1) ensure the long-term population viability of native animal and plant species, (2) maintain the critical ecological and evolutionary processes upon which these species depend, and (3) preserve the full range of communities, successional stages, and environmental gradients. To achieve these objectives, wilderness areas should be selected so as to protect large, contiguous …

On The Relative Importance Of Floral Color, Shape, And Nectar Rewards In Attracting Pollinators To Mimulus, Steven D. Sutherland, Robert K. Vickery Jr.

Great Basin Naturalist

Pollinator preferences were observed for the six species of section Erythranthe of the genus Mimulus using greenhouse-grown plants placed in a meadow in the Red Butte Canyon Natural Area, Salt Lake County, Utah. The principal pollinators were hummingbirds and bumble bees. Hummingbirds preferred the species with the most reflexed tubular flowers regardless of color, whereas bumblebees preferred pink. lavender, or yellow flowers to red flowers regardless of shape. Results for the six species were confirmed by observations of F₂ hybrid recombinant plants selected such that flower color could be held constant and flower shape varied and vice versa.

Seasonal Relationships Between Phytoplankton Composition, Abundance, And Primary Productivity In Three Tidal Rivers Of The Lower Chesapeake Bay, Harold G. Marshall, Kneeland K. Nesius

Biological Sciences Faculty Publications

The seasonal abundance and successional patterns of phytoplankton, including autotrophic picoplankton, are compared to spring, summer, and fall primary production maxima that occurred in three tidal rivers. The tidal freshwaters were dominated by diatoms, chlorophytes, and cyanobacteria during a late spring through early fall period of maximum growth. In contrast, downstream assemblages were dominated by estuarine diatoms, dinoflagellates, and cryptomonads which developed spring pulses and a protracted summer-fall maximum. Autotrophic picoplankton produced a major summer pulse at all river stations with reduced abundance during other seasons. The mean annual productivity rates for the tidal James, Rappahannock, and York rivers were …

Red Butte Canyon Research Natural Area: History, Flora, Geology, Climate, And Ecology, James R. Ehleringer, Lois A. Arnow, Ted Arnow, Irving B. Mcnulty, Norman C. Negus

Great Basin Naturalist

Red Butte Canyon is a protected, near pristine canyon entering Salt Lake Valley, Utah. It contains a well-developed riparian zone and a perennial stream; hillside vegetation ranges from grasslands on the lower limits to Douglas-fir and aspen stands at the upper elevations. In this paper we describe the history of human impact, natural history aspects of climate, geology, and ecology, and faunal and floral information for key species in the canyon. The role and importance of Research Natural Areas is discussed, particularly with respect to the need to protect Red Butte Canyon—one of the few remaining undisturbed riparian ecosystems in …

Dna Extraction From Preserved Trout Tissues, D. K. Shiozawa, J. Kudo, R. P. Evans, S. R. Woodward, R. N. Williams

Great Basin Naturalist

We have adapted techniques developed for the extraction of DNA from formalin-fixed, paraffin-imbedded human tissues for use on preserved fish tissues. DNA was successfully extracted and the d-loop region of mitochondrial DNA was amplified with the polymerase chain reaction (PCR). The sequences of the amplified DNA from preserved and modern samples were identical. These techniques were also applied to fin tissue treated with a variety of preservatives. Extraction of DNA from ethyl alcohol and air-dried fin tissues gave yields equivalent to those from frozen tissues. Extraction of DNA from preserved museum specimens of rare or extinct taxa could significantly increase …