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Full-Text Articles in Computational Neuroscience

A Predictive Coding Account Of Spatial Working Memory Following Prophylactic Levetiracetam Administration Prior To Traumatic Brain Injury, Omeima Mutwali Jun 2026

A Predictive Coding Account Of Spatial Working Memory Following Prophylactic Levetiracetam Administration Prior To Traumatic Brain Injury, Omeima Mutwali

Dissertations, Theses, and Capstone Projects

Traumatic brain injury (TBI) symptom prevention and remediation is an important area of research that would benefit vulnerable groups, including active-duty and veteran soldiers. These patients can sustain penetrative forces in fields of combat or in training, which result in focal lesions that trigger inflammatory and degenerative processes in the brain. Both primary and secondary injuries are associated with changes to cognition, behavior and affective state. This disease poses increased risk of epileptogenesis, as well. Given these outcomes, prior research has evaluated levetiracetam (LEV) as a prophylactic treatment for seizures, cognitive deficits and negative emotionality. LEV acts as a presynaptic …


Somatosensory Cortex Responses To Illusory Touch In A Visual-Tactile Integration Task, Aditi Surendra Pawar Feb 2026

Somatosensory Cortex Responses To Illusory Touch In A Visual-Tactile Integration Task, Aditi Surendra Pawar

Dissertations, Theses, and Capstone Projects

Perceptual illusions arising from multisensory integration reveal how the brain constructs subjective experience from sensory input, and provide a powerful means of allowing the investigation of neural processes that track perceptual interpretation rather than physical stimulation alone. While visual illusions induced by auditory or tactile stimuli have been fairly well studied, the neural mechanisms underlying visually-induced illusory touch remain unclear. This study investigated whether illusory tactile perception engages the somatosensory cortex in a manner similar to veridical touch. Twenty healthy adults participated in an event-related functional magnetic resonance imaging (fMRI) study while performing a tactile numerosity judgment task. Each trial …


Using Neural Networks To Better Understand Static And Dynamic Components Of Facial Expression Recognition, Yi-Fan Li, Anne Bibiana Sereno May 2025

Using Neural Networks To Better Understand Static And Dynamic Components Of Facial Expression Recognition, Yi-Fan Li, Anne Bibiana Sereno

MODVIS Workshop

Facial expressions are crucial social information for human communication. In the real world, facial expressions are dynamic; however, much of existing research in facial expressions relies on static stimuli. This static approach may limit the ecological validity of our understanding of the emotional information on faces. Our study aims to investigate the dynamic and static information contained in different emotional categories of facial expressions (e.g., happy, sad). Four convolutional neural networks are introduced as models to be trained with a large-scale dynamic facial expression dataset (short videoclips of 16 frames of 7 different emotional categories) in four different ways: ordered …


Modeling Effects Of Edge Classification And Perceptual Organization On The Appearance Of Disk/Annulus Stimuli, Michael E. Rudd May 2025

Modeling Effects Of Edge Classification And Perceptual Organization On The Appearance Of Disk/Annulus Stimuli, Michael E. Rudd

MODVIS Workshop

In classical theories of sensory psychophysics, appearance matches conducted with simple stimuli consisting of disks surrounded by annuli were posited to probe low-level contrast mechanisms in the visual pathways that computed the approximate luminance ratio between the disk and annulus for the purpose of achieving lightness constancy (Wallach, 1948). Subsequent models have explained such matches on the basis of neural edge integration (Shapley & Reid, 1985; Rudd & Zemach, 2004). Here, I demonstrate that appearances matches made in the disk/annulus paradigm are influenced by at least two types of top-down effects involving edge classification and perceptual organization. I present a …


Fixational Eye Movements Shake Up The Stationary View On Pattern Vision, Lynn Schmittwilken, Marianne Maertens May 2025

Fixational Eye Movements Shake Up The Stationary View On Pattern Vision, Lynn Schmittwilken, Marianne Maertens

MODVIS Workshop

No abstract provided.


Behavioral And Neural Evidence For Perceptual Inference Of Position, Sharif Saleki Oct 2024

Behavioral And Neural Evidence For Perceptual Inference Of Position, Sharif Saleki

Dartmouth College Ph.D Dissertations

Extensive neuroscientific research has advanced our knowledge of the mechanisms involved in the detection and recognition of visual stimuli. However, to guide flexible behavior in a changing world, the brain must also construct stable and coherent perceptual representations from retinal images that are often ambiguous. To resolve ambiguities and uncertainties, the visual system combines its input with other sources of information such as context and prior knowledge to infer the most likely interpretation of a scene. Thus, perception is inherently an inferential process that goes beyond simple detection or recognition of stimuli. Although inference has been studied in many areas …


Do Mechanisms Of Sinusoidal Contrast Sensitivity Account For Edge Sensitivity?, Lynn Schmittwilken, Felix A. Wichmann, Marianne Maertens May 2024

Do Mechanisms Of Sinusoidal Contrast Sensitivity Account For Edge Sensitivity?, Lynn Schmittwilken, Felix A. Wichmann, Marianne Maertens

MODVIS Workshop

No abstract provided.


Destined Failure, Chengjun Pan Jun 2023

Destined Failure, Chengjun Pan

Masters Theses

I attempt to examine the complex structure of human communication, explaining why it is bound to fail. By reproducing experienceable phenomena, I demonstrate how they can expose communication structure and reveal the limitations of our perception and symbolization.I divide the process of communication into six stages: input, detection, symbolization, dictionary, interpretation, and output. In this thesis, I examine the flaws and challenges that arise in the first five stages. I argue that reception acts as a filter and that understanding relies on a symbolic system that is full of redundancies. Therefore, every interpretation is destined to be a deviation.


Extracting Edges In Space And Time During Visual Fixations, Lynn Schmittwilken, Marianne Maertens May 2023

Extracting Edges In Space And Time During Visual Fixations, Lynn Schmittwilken, Marianne Maertens

MODVIS Workshop

No abstract provided.


A Dynamical Model Of Binding In Visual Cortex During Incremental Grouping And Search, Daniel Schmid, Daniel A. Braun, Heiko Neumann May 2023

A Dynamical Model Of Binding In Visual Cortex During Incremental Grouping And Search, Daniel Schmid, Daniel A. Braun, Heiko Neumann

MODVIS Workshop

Binding of visual information is crucial for several perceptual tasks. To incrementally group an object, elements in a space-feature neighborhood need to be bound together starting from an attended location (Roelfsema, TICS, 2005). To perform visual search, candidate locations and cued features must be evaluated conjunctively to retrieve a target (Treisman&Gormican, Psychol Rev, 1988). Despite different requirements on binding, both tasks are solved by the same neural substrate. In a model of perceptual decision-making, we give a mechanistic explanation for how this can be achieved. The architecture consists of a visual cortex module and a higher-order thalamic module. While the …


Probing The Boundaries Of Human Agency, Sook Mun Wong Dec 2022

Probing The Boundaries Of Human Agency, Sook Mun Wong

Computational and Data Sciences (PhD) Dissertations

In this dissertation, I aim to advance our understanding of human agency and how it is computed. First, I probe the limits of what behavior we can and cannot produce agentically. Secondly, I explore microdosing with psychedelic drugs as a method of perturbing and studying changes to the sense of agency. Thirdly, I use transcranial magnetic stimulation to induce body movements and investigate how the sense of agency is affected. Finally, I summarise my findings and synthesize insights to further our understanding human agency.


Validity Of Neural Distance Measures In Representational Similarity Analysis, Fabian A. Soto, Emily R. Martin, Hyeonjeong Lee, Nafiz Ahmed, Juan Estepa, Kianoosh Hosseini, Olivia A. Stibolt, Valentina Roldan, Alycia Winters, Mohammadreza Bayat May 2022

Validity Of Neural Distance Measures In Representational Similarity Analysis, Fabian A. Soto, Emily R. Martin, Hyeonjeong Lee, Nafiz Ahmed, Juan Estepa, Kianoosh Hosseini, Olivia A. Stibolt, Valentina Roldan, Alycia Winters, Mohammadreza Bayat

MODVIS Workshop

No abstract provided.


Visual Expertise In An Anatomically-Inspired Model Of The Visual System, Garrison W. Cottrell, Martha Gahl, Shubham Kulkarni May 2022

Visual Expertise In An Anatomically-Inspired Model Of The Visual System, Garrison W. Cottrell, Martha Gahl, Shubham Kulkarni

MODVIS Workshop

We report on preliminary results of an anatomically-inspired deep learning model of the visual system and its role in explaining the face inversion effect. Contrary to the generally accepted wisdom, our hypothesis is that the face inversion effect can be accounted for by the representation in V1 combined with the reliance on the configuration of features due to face expertise. We take two features of the primate visual system into account: 1) The foveated retina; and 2) The log-polar mapping from retina to V1. We simulate acquisition of faces, etc., by gradually increasing the number of identities the network learns. …


Fixational Eye Movements, Perceptual Filling-In, And Perceptual Fading Of Grayscale Images, Michael E. Rudd May 2022

Fixational Eye Movements, Perceptual Filling-In, And Perceptual Fading Of Grayscale Images, Michael E. Rudd

MODVIS Workshop

No abstract provided.


Constraining Computational Models Of Brightness Perception: What’S The Right Psychophysical Data?, Guillermo Aguilar, Joris Vincent, Marianne Maertens May 2022

Constraining Computational Models Of Brightness Perception: What’S The Right Psychophysical Data?, Guillermo Aguilar, Joris Vincent, Marianne Maertens

MODVIS Workshop

No abstract provided.


Mechanisms Of Value-Biased Prioritization In Fast Sensorimotor Decision Making, Kivilcim Afacan-Seref Jan 2020

Mechanisms Of Value-Biased Prioritization In Fast Sensorimotor Decision Making, Kivilcim Afacan-Seref

Dissertations and Theses

In dynamic environments, split-second sensorimotor decisions must be prioritized according to potential payoffs to maximize overall rewards. The impact of relative value on deliberative perceptual judgments has been examined extensively, but relatively little is known about value-biasing mechanisms in the common situation where physical evidence is strong but the time to act is severely limited. This research examines the behavioral and electrophysiological indices of how value biases split-second perceptual decisions and the possible mechanisms underlying the process. In prominent decision models, a noisy but statistically stationary representation of sensory evidence is integrated over time to an action-triggering bound, and value-biases …


Is The Selective Tuning Model Of Visual Attention Still Relevant?, John K. Tsotsos May 2019

Is The Selective Tuning Model Of Visual Attention Still Relevant?, John K. Tsotsos

MODVIS Workshop

No abstract provided.


Differentiating Changes In Population Encoding Models With Psychophysics And Neuroimaging, Jason Hays, Fabian Soto Phd May 2019

Differentiating Changes In Population Encoding Models With Psychophysics And Neuroimaging, Jason Hays, Fabian Soto Phd

MODVIS Workshop

It is now common among visual scientists to make inferences about neural population coding of stimuli from indirect measures such as those provided by neuroimaging and psychophysics. The success of such studies depends strongly on simulation work using standard population encoding models extended with decoders (in psychophysics) and measurement models (in neuroimaging). However, not all studies are accompanied by simulation work, and those that are tend to vary widely in their assumptions about encoding, decoding, and measurement. To solve these issues, we designed a Python package (PEMGUIN) to assist computational modelling by providing simple ways to manage encoders' tuning functions, …


Linking Signal Detection Theory And Encoding Models To Reveal Independent Neural Representations From Neuroimaging Data, Fabian A. Soto May 2018

Linking Signal Detection Theory And Encoding Models To Reveal Independent Neural Representations From Neuroimaging Data, Fabian A. Soto

MODVIS Workshop

No abstract provided.


Texture Statistics Are Sufficient For Ensemble Perception, Sasen S. Cain, Matthew S. Cain May 2018

Texture Statistics Are Sufficient For Ensemble Perception, Sasen S. Cain, Matthew S. Cain

MODVIS Workshop

No abstract provided.


Modeling Neural Computations In Lgn And Visual Cortex That Underlie Contextual Modulation Of Lightness And Darkness Magnitudes In Simple And Complex Images, Michael E. Rudd May 2018

Modeling Neural Computations In Lgn And Visual Cortex That Underlie Contextual Modulation Of Lightness And Darkness Magnitudes In Simple And Complex Images, Michael E. Rudd

MODVIS Workshop

No abstract provided.


A Feature-Based Model Of Visually Perceiving Deformable Objects, Vivian C. Paulun, Filipp Schmidt, Roland W. Fleming May 2018

A Feature-Based Model Of Visually Perceiving Deformable Objects, Vivian C. Paulun, Filipp Schmidt, Roland W. Fleming

MODVIS Workshop

No abstract provided.


Effect Of Noise On Mutually Inhibiting Pyramidal Cells In Visual Cortex: Foundation Of Stochasticity In Bi-Stable Perception, Naoki Kogo, Felix Kern, Thomas Nowotny, Raymond Van Ee, Richard Van Wezel, Takeshi Aihara May 2018

Effect Of Noise On Mutually Inhibiting Pyramidal Cells In Visual Cortex: Foundation Of Stochasticity In Bi-Stable Perception, Naoki Kogo, Felix Kern, Thomas Nowotny, Raymond Van Ee, Richard Van Wezel, Takeshi Aihara

MODVIS Workshop

Bi-stable perception has been an important tool to investigate how visual input is interpreted and how it reaches consciousness. To explain the mechanisms of this phenomenon, it has been assumed that a mutual inhibition circuit plays a key role. It is possible that this circuit functions to resolve ambiguity of input image by quickly shifting the balance of competing signals in response to conflicting features. Recently we established an in vitro neural recording system combined with computerized connections mediated by model neurons and synapses (“dynamic clamp” system). With this system, mutual inhibition circuit between two pyramidal cells from primary visual …


Neural Computation Of Statistical Image Properties In Peripheral Vision, Christoph Zetzsche, Ruth Rosenholtz, Noshaba Cheema, Konrad Gadzicki, Lex Fridman May 2017

Neural Computation Of Statistical Image Properties In Peripheral Vision, Christoph Zetzsche, Ruth Rosenholtz, Noshaba Cheema, Konrad Gadzicki, Lex Fridman

MODVIS Workshop

No abstract provided.


Using Classification Images To Understand Models Of Lightness Perception, Minjung Kim, Jason M. Gold, Richard F. Murray May 2017

Using Classification Images To Understand Models Of Lightness Perception, Minjung Kim, Jason M. Gold, Richard F. Murray

MODVIS Workshop

No abstract provided.


Heuristics From Statistics—Modeling The Behavior And Perception Of Non-Rigid Materials, Vivian C. Paulun, Roland W. Fleming May 2017

Heuristics From Statistics—Modeling The Behavior And Perception Of Non-Rigid Materials, Vivian C. Paulun, Roland W. Fleming

MODVIS Workshop

No abstract provided.


Virtual V1sion: A Collaborative Coding Project, Cheryl Olman May 2016

Virtual V1sion: A Collaborative Coding Project, Cheryl Olman

MODVIS Workshop

Virtual V1sion is a new idea for fostering modeling collaborations and data sharing. While still in its infancy, the ultimate goal is a website that hosts repositories for (1) interchangeable model elements, (2) datasets that can be fit/predicted by those models, and (3) educational modules that explain the background for both the models and the datasets. The scope of the modeling is limited to predictions of V1 responses, although not all computations represented by model elements in Virtual V1sion are required to be V1-intrinsic: a goal of the project is to provide a framework in which predictions for modulation by …


Parametrically Constrained Lightness Model Incorporating Edge Classification And Increment-Decrement Neural Response Asymmetries, Michael E. Rudd May 2016

Parametrically Constrained Lightness Model Incorporating Edge Classification And Increment-Decrement Neural Response Asymmetries, Michael E. Rudd

MODVIS Workshop

Lightness matching data from disk-annulus experiments has the form of a parabolic (2nd-order polynomial) function when matches are plotted against annulus luminance on log-log axes. Rudd (2010) has proposed a computational cortical model to account for this fact and has subsequently (Rudd, 2013, 2014, 2015) extended the model to explain data from other lightness paradigms, including staircase-Gelb and luminance gradient illusions (Galmonte, Soranzo, Rudd, & Agostini, 2015). Here, I re-analyze parametric lightness matching data from disk-annulus experiments by Rudd and Zemach (2007) and Rudd (2010) for the purpose of further testing the model and to try to constrain …


Learning Object Representations For Modeling Attention In Real World Scenes, Alex Schwarz, Frederik Beuth, Fred H. Hamker May 2016

Learning Object Representations For Modeling Attention In Real World Scenes, Alex Schwarz, Frederik Beuth, Fred H. Hamker

MODVIS Workshop

Models of visual attention have been rarely used in real world tasks as they have been typically developed for psychophysical setups using simple stimuli. Thus, the question remains how objects must be represented to allow such models an operation in real world scenarios. We have previously presented an attention model capable of operating on real-world scenes (Beuth, F., and Hamker, F. H. 2015, NCNC, which is a successor of Hamker, F. H., 2005, Cerebral Cortex), and show here how its object representations have been learned. We have used a learning rule based on temporal continuity (Földiák, P., 1991, Neural Computation) …


“My Logic Is Undeniable”: Replicating The Brain For Ideal Artificial Intelligence, Samuel C. Adams Apr 2016

“My Logic Is Undeniable”: Replicating The Brain For Ideal Artificial Intelligence, Samuel C. Adams

Senior Honors Theses

Alan Turing asked if machines can think, but intelligence is more than logic and reason. I ask if a machine can feel pain or joy, have visions and dreams, or paint a masterpiece. The human brain sets the bar high, and despite our progress, artificial intelligence has a long way to go. Studying neurology from a software engineer’s perspective reveals numerous uncanny similarities between the functionality of the brain and that of a computer. If the brain is a biological computer, then it is the embodiment of artificial intelligence beyond anything we have yet achieved, and its architecture is advanced …