Neuroscience and Neurobiology Commons^™

The Effects Of Sleep-Dependent Memory Consolidation On The Discriminability And Generalizability Of Learning, Bengt Grua, Dr. C Brock Kirwan

Journal of Undergraduate Research

The goal of this study was to determine how sleep affects memory recall in an academic setting with relation to memory discrimination and memory generalization. Memory generalization depends on the computational process of pattern completion, which is the brain’s ability to retrieve a memory representation based on a partial or modified stimulus (such as viewing a false statement as true if it has many true elements embedded in it). Memory discrimination depends on the computational process of pattern separation, which is the brain’s ability to store a memory as distinct and separate from other, similar memories. Current models of sleep …

The Effects Of Sleep-Dependent Memory Consolidation On The Discriminability And Generalizability Of Learning, Bengt Grua, Dr. C Brock Kirwan

Journal of Undergraduate Research

The goal of this study was to determine how sleep affects memory recall in an academic setting with relation to memory discrimination and memory generalization. Memory generalization depends on the computational process of pattern completion, which is the brain’s ability to retrieve a memory representation based on a partial or modified stimulus (such as viewing a false statement as true if it has many true elements embedded in it). Memory discrimination depends on the computational process of pattern separation, which is the brain’s ability to store a memory as distinct and separate from other, similar memories. Current models of sleep …

The Effect Of Exercise On Inhibitory Control To Images Of High And Low Calorie Food, Cory Pettit, Michael J. Larson

Journal of Undergraduate Research

The purpose of this study was to examine the effects of exercise on the neural correlates of response inhibition to high and low calorie foods. Specifically, we aimed to explore whether engaging in forty-five minutes of moderate intensity exercise affects brain activity that denotes inhibitory control while a person withholds practiced responses to pictures of high or low calorie food. We quantified inhibitory control by measuring the amplitude of the N2 event related potential (ERP; described below) using electroencephalogram (EEG) technology.

Induction Of Neuromelanin In Live Tissue, Corrine Morrison, Dr. Scott Steffensen

Journal of Undergraduate Research

An estimated seven to ten million people worldwide are living with Parkinson’s Disease (PD) and about 60,000 Americans are diagnosed with the disease each year (Parkinson’s Disease Foundation, 2013). The underlying cause of the movement disorders in PD is dopamine (DA) neuron degeneration in the substantia nigra pars compacta (SNc). A proposed mechanism behind DA cell death is additional oxidative stress that occurs in early stages of the disease state. NM is believed to be a protective agent against reactive oxygen species (ROS), but as NM depigmentation is a distinctive feature of PD, it is likely that there is a …

The Effect Of Exercise On Inhibitory Control To Images Of High And Low Calorie Food, Cory Pettit, Michael J. Larson, Phd

Journal of Undergraduate Research

The purpose of this study was to examine the effects of exercise on the neural correlates of response inhibition to high and low calorie foods. Specifically, we aimed to explore whether engaging in forty-five minutes of moderate intensity exercise affects brain activity that denotes inhibitory control while a person withholds practiced responses to pictures of high or low calorie food. We quantified inhibitory control by measuring the amplitude of the N2 event related potential (ERP; described below) using electroencephalogram (EEG) technology.

Cell Type Specificity Of Tissue Plasminogen Activator In The Mouse Barrel Cortex, Philip Chu, Eric Chen, Adesh Bajnath, Joshua C. Brumberg

Publications and Research

It has been suggested that tissue-type plasminogen activator (tPA), a serine protease, plays a key role in regulating the extracellular matrix core proteins, thereby impacting the structural plasticity in the cerebral cortex. Much is known about its role in regulating plasticity in the visual cortex. However, its permissive role has not been demonstrated to generalize to other cerebral cortical areas. By utilizing a combination of immunofluorescent histochemistry and confocal microscopy, we demonstrate that endogenous tPA is indeed present in the somatosensory cortex, and its expression is experience-dependent. Chronic sensory deprivation induced by whisker trimming from birth for one month leads …

Neuron-Based Heredity And Human Evolution, Don M. Gash, Andrew S. Deane

Neuroscience Faculty Publications

It is widely recognized that human evolution has been driven by two systems of heredity: one DNA-based and the other based on the transmission of behaviorally acquired information via nervous system functions. The genetic system is ancient, going back to the appearance of life on Earth. It is responsible for the evolutionary processes described by Darwin. By comparison, the nervous system is relatively newly minted and in its highest form, responsible for ideation and mind-to-mind transmission of information. Here the informational capabilities and functions of the two systems are compared. While employing quite different mechanisms for encoding, storing and transmission …

Behavioral And Cognitive Changes After Early Postnatal Lesions Of The Rat Mediodorsal Thalamus, Zakaria Ouhaz, Saadua B-M'Hamed, Anna S. Mitchell, Abdeslem Elidrissi, Mohamed Bennis

Publications and Research

Early insults to the thalamus result in functional and/or structural abnormalities in the cerebral cortex. However, differences in behavioral and cognitive changes after early insult are not well characterized. The present study assessed whether early postnatal damage to mediodorsal nucleus of the thalamus (MD), reciprocally interconnected with the prefrontal cortex, causes behavioral and cognitive alterations in young adult rats. Rat pups at postnatal day 4 received bilateral electrolytic lesion of MD, or aMD Sham lesion or were anesthetized controls; on recovery they were returned to their mothers until weaning. Seven weeks later, all rats were tested with the following behavioral …

The Effects Of Arginine Vasopressin On Maternal Behavior And Aggression In Peromyscus Californicus Mothers, Nathaniel Ng

Honors Projects

Research studies since the 1950s have shown that a chemical within the brain called arginine vasopressin (AVP) is associated with the modulation of many different social behaviors in mammals. Some of these behaviors are related to parenting, such as parental care initiation, aggression, social recognition, depression and anxiety. Understanding the physiology behind AVP regulation could allow for the creation of new therapies for treating human social disorders, such as using an AVP receptor antagonist to attenuate anxiety. This project examines how neural injections of AVP and an AVP receptor antagonist affect both maternal care and aggression in female Peromyscus californicus …

The Cognition-Enhancing Effects Of Psychostimulants Involve Direct Action In The Prefrontal Cortex, Robert C. Spencer, David M. Devilbiss, Craig Berridge

Rowan-Virtua School of Osteopathic Medicine Departmental Research

Psychostimulants are highly effective in the treatment of attention-deficit/hyperactivity disorder. The clinical efficacy of these drugs is strongly linked to their ability to improve cognition dependent on the prefrontal cortex (PFC) and extended frontostriatal circuit. The procognitive actions of psychostimulants are only associated with low doses. Surprisingly, despite nearly 80 years of clinical use, the neurobiology of the procognitive actions of psychostimulants has only recently been systematically investigated. Findings from this research unambiguously demonstrate that the cognition-enhancing effects of psychostimulants involve the preferential elevation of catecholamines in the PFC and the subsequent activation of norepinephrine α2 and dopamine D1 receptors. …

Regulation Of Glial Cell Line-Derived Neurotrophic Factor (Gdnf) Production In Voluntary And Involuntary Muscle, John-Mary Vianney

Dissertations

Glia cell line-derived neurotrophic factor (GDNF) is a survival factor for subpopulations of neurons, including somatic and autonomic motor neurons. These neurons depend, in part, on GDNF that is synthesized and secreted by their target tissues. It has been shown that a number of tissues in the periphery express GDNF and these target tissues differ in their composition, function, and in the case of different muscle cell types, their contractile characteristics. Whether the processes regulating GDNF production in these different tissues is similar or different is poorly understood. The broad goal of this study is to examine factors that normally …

Evolutionary Convergence Of The Caffeine Biosynthetic Pathway In Chocolate Followed Duplication Of A Constrained Ancestral Enzyme, Andrew J. O'Donnell

Masters Theses

Caffeine biosynthesis is widely distributed in flowering plants and requires three consecutive methylation steps of xanthine alkaloids. Genes that have previously been reported to participate in the multi-step pathway in Coffea sp. (coffee) and Camellia sinensis (tea) encode members of the SABATH family of methyltransferases. Two genes highly expressed in fruits of Theobroma cacao (cacao) are orthologous to the caffeine genes in tea and appear to have diversified following gene duplication. Biochemical characterization of the enzymes (XMTs) encoded by these genes strongly suggest an unprecedented major pathway to theobromine, a precursor to caffeine. These findings imply that caffeine biosynthesis evolved …

Category-Selective Attention Interacts With Partial Awareness Processes In A Continuous Manner: An Fmri Study, Shen Tu, Jerwen Jou, Qian Cui, Guang Zhao, Kangcheng Wang, Glenn Hitchman, Jiang Qiu, Qinglin Zhang

Psychological Science Faculty Publications

Recently, our team found that category-selective attention could modulate tool processing at the partial awareness level and unconscious face processing in the middle occipital gyrus (MOG). However, the modulation effects in MOG were in opposite directions across the masked tool and masked face conditions in that study: MOG activation decreased in the masked faces condition but increased in the masked tools condition under the consistent compared with the inconsistent cue-selective-attentional modulation. In the present study, in order to confirm that the opposite effects were due to the changed contours of the tools, using the same tool pictures and fMRI technique, …

Disruption Of Columnar And Laminar Cognitive Processing In Primate Prefrontal Cortex Following Cocaine Exposure, Ioan Opris, Greg A. Gerhardt, Robert E. Hampson, Sam A. Deadwyler

Neuroscience Faculty Publications

Prefrontal cortical activity in primate brain plays a critical role in cognitive processes involving working memory and the executive control of behavior. Groups of prefrontal cortical neurons within specified cortical layers along cortical minicolumns differentially generate inter- and intra-laminar firing to process relevant information for goal oriented behavior. However, it is not yet understood how cocaine modulates such differential firing in prefrontal cortical layers. Rhesus macaque nonhuman primates (NHPs) were trained in a visual delayed match-to-sample (DMS) task while the activity of prefrontal cortical neurons (areas 46, 8 and 6) was recorded simultaneously with a custom multielectrode array in cell …

Prenatal Predictors Of Infant Self-Regulation: The Contributions Of Placental Dna Methylation Of Nr3c1 And Neuroendocrine Activity, Elisabeth Conradt, Mary Fei, Linda Lagasse, Edward Tronick, Dylan Guerin, Daniel Gorman, Carmen J. Marsit, Barry M. Lester

Dartmouth Scholarship

We examined whether placental DNA methylation of the glucocorticoid receptor gene, NR3C1 was associated with self-regulation and neuroendocrine responses to a social stressor in infancy. Placenta samples were obtained at birth and mothers and their infants (n = 128) participated in the still-face paradigm when infants were 5 months old. Infant self-regulation following the still-face episode was coded and pre-stress cortisol and cortisol reactivity was assessed in response to the still-face paradigm. A factor analysis of NR3C1 CpG sites revealed two factors: one for CpG sites 1-4 and the other for sites 5-13. DNA methylation of the factor comprising NR3C1 …

Disease-Related Microglia Heterogeneity In The Hippocampus Of Alzheimer's Disease, Dementia With Lewy Bodies, And Hippocampal Sclerosis Of Aging, Adam D. Bachstetter, Linda J. Van Eldik, Frederick A. Schmitt, Janna H. Neltner, Eseosa T. Ighodaro, Scott J. Webster, Ela Patel, Erin L. Abner, Richard J. Kryscio, Peter T. Nelson

Sanders-Brown Center on Aging Faculty Publications

Introduction: Neuropathological, genetic, and biochemical studies have provided support for the hypothesis that microglia participate in Alzheimer's disease (AD) pathogenesis. Despite the extensive characterization of AD microglia, there are still many unanswered questions, and little is known about microglial morphology in other common forms of age-related dementia: particularly, dementia with Lewy bodies (DLB) and hippocampal sclerosis of aging (HS-Aging). In addition, no prior studies have attempted to compare and contrast the microglia morphology in the hippocampus of various neurodegenerative conditions.

Results: Here we studied cases with pathologically-confirmed AD (n = 7), HS-Aging (n = 7), AD + HS-aging …

Autonomic And Brain Responses Associated With Empathy Deficits In Autism Spectrum Disorder, Xiaosi Gu, Tehila Eilam-Stock, Thomas Zhou, Evdokia Anagnostou, Alexander Kolevzon, Latha Soorya, Patrick R. Hof, Karl J. Friston, Jin Fan

Publications and Research

Accumulating evidence suggests that autonomic signals and their cortical representations are closely linked to emotional processes, and that related abnormalities could lead to social deficits. Although socio-emotional impairments are a defining feature of autism spectrum disorder (ASD), empirical evidence directly supporting the link between autonomic, cortical, and socio-emotional abnormalities in ASD is still lacking. In this study, we examined autonomic arousal indexed by skin conductance responses (SCR), concurrent cortical responses measured by functional magnetic resonance imaging, and effective brain connectivity estimated by dynamic causal modeling in seventeen unmedicated high-functioning adults with ASD and seventeen matched controls while they performed an …

Characterizing Receptive Field Selectivity In Area V2, Corey M. Ziemba, Robbe Lt Goris, J Anthony Movshon, Eero P. Simoncelli

MODVIS Workshop

The computations performed by neurons in area V1 are reasonably well understood, but computation in subsequent areas such as V2 have been more difficult to characterize. When stimulated with visual stimuli traditionally used to investigate V1, such as sinusoidal gratings, V2 neurons exhibit similar selectivity (but with larger receptive fields, and weaker responses) relative to V1 neurons. However, we find that V2 responses to synthetic stimuli designed to produce naturalistic patterns of joint activity in a model V1 population are more vigorous than responses to control stimuli that lacked this naturalistic structure (Freeman, et. al. 2013). Armed with this signature …

‘Edge’ Integration Explains Contrast And Assimilation In A Gradient Lightness Illusion, Michael E. Rudd

MODVIS Workshop

In the ‘phantom’ illusion (Galmonte, Soranzo, Rudd, & Agostini, submitted), either an incremental or a decremental target, when surrounded by a luminance gradient, can to be made to appear as an increment or a decrement, depending on the gradient width. For wide gradients, incremental targets appear as increments and decremental targets appear as decrements. For narrow gradients, the reverse is true. Here, I model these phenomena with a two-stage neural lightness theory (Rudd, 2013, 2014) in which local steps in log luminance are first encoded by oriented spatial filters operating on a log-transformed version of the image; then the filter …

Time-Lapse Statistics Of Cone Signals From Natural Scenes, David H. Foster, Kinjiro Amano, Sérgio M C Nascimento

MODVIS Workshop

In the natural world, the spectrum and geometry of the illumination from the sun and sky vary over the day. These geometric changes make it especially difficult to extract from the reflected light invariant signals for surface color perception. The aim of this study was to test the utility of certain combinations of retinal cone excitations, in particular, spatial cone-excitation ratios, known to be approximately invariant under non-geometric changes in illumination. Hyperspectral radiance images were acquired at roughly hourly intervals in four outdoor scenes in the Minho region of Portugal. Spatial resolution of the camera was 1344×1024 pixels. Peak-transmission wavelength …

The Bounded Log-Odds Model Of Frequency And Probability Distortion, Hang Zhang, Laurence T. Maloney

MODVIS Workshop

No abstract provided.

Putting Saliency In Its Place, John K. Tsotsos

MODVIS Workshop

The role of attention and the place within the visual processing stream where the concept of saliency has been situated is critically examined by considering the experimental evidence and performing tests that link experiment to computation.

Towards A Unified Computational Model Of Contextual Interactions Across Visual Modalities, David A. Mély, Thomas Serre

MODVIS Workshop

The perception of a stimulus is largely determined by its surrounding. Examples abound from color (Land and McCann, 1971), disparity (Westheimer, 1986) and motion induction (Anstis and Casco, 2006) to orientation tilt effects (O’Toole and Wenderoth, 1976). Some of these phenomena have been studied individually using monkey neurophysiology techniques. In these experiments, a center stimulus is typically used to probe a cell’s classical “center” receptive field (cRF), whose activity is then modulated by an annular “surround” (extra-cRF) stimulus. While this center-surround integration (CSI) has been well characterized, a theoretical framework which unifies these different phenomena across visual modalities is lacking. …

A Conceptual Framework Of Computations In Mid-Level Vision, Jonas Kubilius, Johan Wagemans, Hans P. Op De Beeck

MODVIS Workshop

The goal of visual processing is to extract information necessary for a variety of tasks, such as grasping objects, navigating in scenes, and recognizing them. While ultimately these tasks might be carried out by separate processing pathways, they nonetheless share a common root in the early and intermediate visual areas. What representations should these areas develop in order to facilitate all of these higher-level tasks? Several distinct ideas have received empirical support in the literature so far: (i) boundary feature detection, such as edge, corner, and curved segment extraction; (ii) second-order feature detection, such as the difference in orientation or …

Binocular 3d Motion Perception As Bayesian Inference, Martin Lages, Suzanne Heron

MODVIS Workshop

The human visual system encodes monocular motion and binocular disparity input before it is integrated into a single 3D percept. Here we propose a geometric-statistical model of human 3D motion perception that solves the aperture problem in 3D by assuming that (i) velocity constraints arise from inverse projection of local 2D velocity constraints in a binocular viewing geometry, (ii) noise from monocular motion and binocular disparity processing is independent, and (iii) slower motions are more likely to occur than faster ones. In two experiments we found that instantiation of this Bayesian model can explain perceived 3D line motion direction under …

A Binocular Model For Motion Integration In Mt Neurons, Pamela M. Baker, Wyeth Bair

MODVIS Workshop

Processing of visual motion by neurons in MT has long been an active area of study, however circuit models detailing the computations underlying binocular integration of motion signals remains elusive. Such models are important for studying the visual perception of motion in depth (MID), which involves both frontoparallel (FP) visual motion and binocular signal integration. Recent studies (Czuba et al. 2014, Sanada and DeAngelis 2014) have shown that many MT neurons are MID sensitive, contrary to the prevailing view (Maunsell and van Essen, 1983). These novel data are ideal for constraining models of binocular motion integration in MT. We have …

A Critical Evaluation Of Computational Mechanisms Of Binocular Disparity Processing, Junkyung Kim, David A. Mély, Thomas Serre

MODVIS Workshop

The past decades of research in visual neuroscience have generated a large and disparate body of literature on the computation of binocular disparity in the primary visual cortex. Models have been proposed to describe specific phenomena, yet we lack a theoretical framework which is grounded in neurophysiology and also explains the effectiveness of disparity computation. Here, we examine neural circuits that are thought to play an important role in the computation of binocular disparity. Starting with the binocular energy model (Ohzawa et al. 1990), we consider plausible extensions which include suppressive mechanisms from units tuned to different phase disparities (Tanabe …

Modeling Shape Representation In Area V4, Wyeth Bair, Dina Popovkina, Abhishek De, Anitha Pasupathy

MODVIS Workshop

Our model builds on a convolutional-style neural network with hierarchical stages representing processing steps in the ventral visual pathway. It was designed to capture the translation-invariance and shape-selectivity of neurons in area V4. The model uses biologically plausible linear filters at the front end, normalization and sigmoidal nonlinear activation functions. The max() function is used to generate translation invariance.

A Recurrent Multilayer Model With Hebbian Learning And Intrinsic Plasticity Leads To Invariant Object Recognition And Biologically Plausible Receptive Fields, Michael Teichmann, Fred H. Hamker

MODVIS Workshop

Much effort has been spent to develop biologically plausible models for different aspects of the processing in the visual cortex. However, most of these models are not investigated with respect to the functionality of the neural code for the purpose of object recognition comparable to the framework of deep learning in the machine learning community.
We developed a model of V1 and V2 based on anatomical evidence of the layered architecture, using excitatory and inhibitory neurons where the connectivity to each neuron is learned in parallel. We address learning by three different mechanisms of plasticity: intrinsic plasticity, Hebbian learning with …

A Computational Model To Account For Dynamics Of Spatial Updating Of Remembered Visual Targets Across Slow And Rapid Eye Movements, Yalda Mohsenzadeh, J. Douglas Crawford

MODVIS Workshop

Despite the ever-changing visual scene on the retina between eye movements, our perception of the visual world is constant and unified. It is generally believed that this space constancy is due to the brain’s ability of spatial updating. Although many efforts have been made to discover the mechanism underlying spatial updating across eye movements, still there are many unanswered questions about the neuronal mechanism of this phenomenon.

We developed a state space model for updating gaze-centered spatial information. To explore spatial updating, we considered two kinds of eye movements, saccade and smooth pursuit. The inputs to our proposed model are: …