Neuroscience and Neurobiology Commons^™

Energy As A Limiting Factor In Neuronal Seizure Control: A Mathematical Model, Sophia E. Epstein

CMC Senior Theses

The majority of seizures are self-limiting. Within a few minutes, the observed neuronal synchrony and deviant dynamics of a tonic-clonic or generalized seizure often terminate. However, a small epilesia partialis continua can occur for years. The mechanisms that regulate subcortical activity of neuronal firing and seizure control are poorly understood. Published studies, however, through PET scans, ketogenic treatments, and in vivo mouse experiments, observe hypermetabolism followed by metabolic suppression. These observations indicate that energy can play a key role in mediating seizure dynamics. In this research, I seek to explore this hypothesis and propose a mathematical framework to model how …

Does Seclusion Alter Amygdala Activity And Amygdala-Medial Prefrontal Cortex Connectivity Leading To Emotional Dysregulation In Children? A Case For Ending Seclusion And Restraint In Public Schools, Crystal Anyanwu

CMC Senior Theses

The use of seclusion as a disciplinary practice in schools has been cited as an effective way to mitigate a child’s behavior if they pose a threat of imminent danger to others or themselves and an effective means of helping a child regulate their emotions. However, research has shown that this practice has resulted in psychological harm (e.g. traumatic stress responses), physical injuries, and death to both staff applying these techniques and the children experiencing them. The effects of seclusion on the neurodevelopment of children remain widely unknown. Traumatic stress has been shown to increase the volume of the amygdala …

A Study Of Limited Bedding And Nesting On Maternal Behavior For Postpartum Depression, Emma Brezoczky

CMC Senior Theses

Postpartum depression (PPD) affects up to 20% of mothers in the US and can detrimentally affect both the mother and psychosocial development of the child (Pearlstein et al, 2009). So far, research on PPD is limited and the underlying neuropathology remains unclear. Low socioeconomic status is one risk factor that increases the risk of PPD tenfold (Goyal et al, 2010). The low resource limited bedding and nesting (LBN) paradigm used for rodents has the potential to model this risk factor. LBN has not previously been studied with PPD, but observations of disrupted maternal behaviors and depressive phenotypes makes it a …

Diversifying Participation: The Rarity Of Reporting Racial Demographics In Neuroimaging Research, Madeline Goldfarb

Pitzer Senior Theses

Background: Functional neuroimaging techniques have been instrumental to progress in the cognitive and behavioral sciences; however, their increasing prevalence has evoked conversations concerning limitations associated with reproducibility and bias (Gilmore et al., 2017). While the literature has explored several mechanisms driving issues of replicability, few discussions have considered the effects of confounding social and environmental variables such as age, sex, socioeconomic status, and race (Sauce & Matzel, 2013). The prevailing racial, cultural, and socioeconomic bias in scientific research and the methodological limitations of EEG perpetuate racial and ethnic homogeneity in participation, eliciting qualms regarding the generalizability of findings (Henrich et …

Subjective Value Of Previous Item Is Encoded During Valuation In Event-Related Potentials, Madeline Valdez

CMC Senior Theses

Research in economics and neuroscience has shown that an item’s value is subjective, in that it depends on the circumstances and preferences of the observer rather than the item’s inherent properties. In particular, value can be affected by the context in which an item is presented: for example, an apple might look more appealing if it is offered right after something less tasty, such as broccoli, than after something tempting like chocolate cake. Consistent with this idea, studies using invasive electrophysiology have shown that value signals corresponding to the current item are modulated by the value of the previously encountered …

Morphological Changes In Dorsal Root Ganglia Macrophages Associated With Neuropathic Pain Mechanisms Suggest A Novel Target For Chronic Pain Therapy, Emily Kussick

CMC Senior Theses

The present study examined morphological changes in the dorsal root ganglia (DRG) following an innate immune stimulus. The importance of the DRG has increasingly become recognized in pain processing as more than just the home of primary afferent cell bodies. All sensory information passes through the DRG via the primary afferents, and on to the spinal cord. The primary afferents synapse with second-order neurons in the spinal cord that ascend towards the brain, where they transmit the pain signal to the limbic forebrain and/or the somatosensory cortex for processing. The DRG is an interesting niche to study at as it …

Extending Power Series Methods For The Hodgkin-Huxley Equations, Including Sensitive Dependence, James S. Sochacki

CODEE Journal

A neural cell or neuron is the basic building block of the brain and transmits information to other neurons. This paper demonstrates the complicated dynamics of the neuron through a numerical study of the Hodgkin-Huxley differential equations that model the ionic mechanisms of the neuron: slight changes in parameter values and inputted electrical impulses can lead to very different (unexpected) results. The methods and ideas developed for the ordinary differential equations are extended to partial differential equations for Hodgkin-Huxley networks of neurons in one, two and three dimensions.

Neuroscience Of Stress & Addiction: A Digitally Animated Video On How These Brain Systems Interact And Influence Each Other From Early Life Stress To Withdrawal, Claire Bacon-Brenes

Scripps Senior Theses

Alcohol addiction and stress are both highly prevalent health conditions impacting our society. With stress on the rise in college students and alcohol addiction impacting 19.7 million Americans as of 2017, communication around the science of these issues is ever important because of stigma around them. This digitally animated video effectively explains alcohol addiction and stress on a neurobiological level with college science students as the audience, including two important examples of how stress and alcohol addiction interact. Stress experienced early in life is a known risk factor in developing addiction due to dysregulation of the reward pathway and altered …

Biomechanics And Neural Control Of Movement: Cmi's Effects On Downstream Motor Processing And Gait In Forwards And Backwards Walking, Christopher Choi

CMC Senior Theses

Analyzing the effects of cognitive motor interferences (CMI) on walking is usually done in patients with neurological comorbidity or during forward walking (FW). However, there are few studies that examine gait differences between FW and backward walking (BW) under the presence of CMI when speed is kept constant on a treadmill. In this study we examined how CMI would disrupt sensory feedback and affect the descending motor pathway. We hypothesized that subjects that walked backwards and were given a cognitive task would show the greatest differences in gait due to a lack of visual input and the presence of CMI. …

Targeted Genome-Scale Gene Activation And Gene Editing In Human Cells To Understand Disease Models, Michael De La Cruz

KGI Theses and Dissertations

Since the discovery of sequence directed DNA editing reagents such as CRISPR-Cas9 RNA-guided and TALEN DNA endonucleases, there has been a snowball of advances in the life sciences due to the ability to efficiently edit and control genomes within living cells. CRISPR-Cas9 based genomic tools, which facilitate the high-throughput precise manipulation of genes, allow for unbiased functional genomic screens. We used a human CRISPR-Cas9 Synergistic Activation Mediator pooled library which utilizes an engineered protein complex for transcriptional activation of 23,430 endogenous genes to investigate the development of novel resistance mechanisms to lung cancer targeted therapy, Erlotinib. We set out to …

Spaces Between, Sara Kapadia

The Transdisciplinary STEAM+ Journal

No abstract provided.

Prediction Of The Outcome In Cardiac Arrest Patients Undergoing Hypothermia Using Eeg Wavelet Entropy, Hana Moshirvaziri

CGU Theses & Dissertations

Cardiac arrest (CA) is the leading cause of death in the United States. Induction of hypothermia has been found to improve the functional recovery of CA patients after resuscitation. However, there is no clear guideline for the clinicians yet to determine the prognosis of the CA when patients are treated with hypothermia. The present work aimed at the development of a prognostic marker for the CA patients undergoing hypothermia. A quantitative measure of the complexity of Electroencephalogram (EEG) signals, called wavelet sub-band entropy, was employed to predict the patients’ outcomes. We hypothesized that the EEG signals of the patients who …

A Composite Review Of The Proposed Molecular Mechanisms And Genetic Components Underlying Parkinson’S Disease, Paige Brodrick

Scripps Senior Theses

Parkinson’s disease (PD) is a progressive neurodegenerative disorder characterized by the progressive death of dopaminergic neurons present in the substantia nigra. The clinical presentation of PD includes tremors, slowed movement (bradykinesia), muscle and limb rigidity, and difficulty with walking and balancing. While many environmental factors can affect the onset and progression of the disease, genetic mutations have a large influence. Of the identified PD-linked genetic mutations, mutations in the leucine-rich repeat kinase 2 (LRRK2) are one of the most common genetic causes of PD. Located in endosomes, LRRK2 has been shown to play a role in the sorting and endocytosis …

Investigating Neurogenesis As A Veritable Epigenetic Endophenotype For Alzheimer's Disease, Layne Wells

Scripps Senior Theses

Alzheimer's disease (AD) is the most common neurodegenerative disease, characterized by progressive amyloid plaque aggregation, neurofibrillary tangles, and cortical tissue death. As the prevalence of AD is projected to climb in coming years, there is a vested interest in identifying endophenotypes by which to improve diagnostics and direct clinical interventions. The risk for complex disorders, such as AD, is influenced by multiple genetic, environmental, and lifestyle factors. Significant strides have been made in identifying genetic variants linked to AD through the genome-wide association study (GWAS). It has been estimated in more recent years, however, that GWAS-identified variants account for limited …

Relations Among Maternal And Paternal Behavior And Children's Stress Biology, S.K. Jiaming Lin, Stacey N. Doan, John Milton

Scripps Senior Theses

Parenting behavior has been shown to have a wide range of effects, influencing children’s psychological and biological stress outcomes. Most research focuses on maternal parenting behaviors, with few studies observing the effects of paternal behaviors or the influence of both parents on their children. In this study, the relationship between maternal and paternal parenting behaviors was examined in its association to predict children’s cortisol levels. Cultural differences in parenting styles was also observed. American (N=86) and Chinese (N=97) families participated in the study, with parents reporting their behaviors. Children’s cortisol was collected during a stressor task and correlational analysis was …

Evidence-Based Probiotic Intervention For Behavioral And Social Deficits In Autism Spectrum Disorder, Allisen To

Scripps Senior Theses

Autism Spectrum Disorder (ASD) refers to a heterogeneous neurological condition characterized by repetitive and restrictive behaviors and social communication deficits. ASD diagnoses are at a record high, at approximately 1 in 59 children according to the US Center for Disease Control. Currently, there are no available interventions that effectively treat the core symptoms of ASD. All pharmaceutical options address comorbid side effects of ASD but not core deficits and are particularly associated with negative side effects. Additionally, there are economic and geographic barriers that can prevent families of individuals with ASD from seeking or receiving effective interventions. Many of the …

The Characterization Of Alzheimer’S Disease And The Development Of Early Detection Paradigms: Insights From Nosology, Biomarkers And Machine Learning, Isabel Milano

CMC Senior Theses

Alzheimer’s Disease (AD) is the only condition in the top ten leading causes of death for which we do not have an effective treatment that prevents, slows, or stops its progression. Our ability to design useful interventions relies on (a) increasing our understanding of the pathological process of AD and (b) improving our ability for its early detection. These goals are impeded by our current reliance on the clinical symptoms of AD for its diagnosis. This characterizations of AD often falsely assumes a unified, underlying AD-specific pathology for similar presentations of dementia that leads to inconsistent diagnoses. It also hinges …

Global Consciousness: A Functionalist Neurophilosophical Perspective, Connor C. Bowen

CMC Senior Theses

The purpose of this thesis is to explore a thought-provoking consequence of the functionalist theory of mind. Given the current organizational structure of Earth and field theories of consciousness in neuroscience, Earth is probably conscious. The argument is explored through an examination of the current organizational structure of Earth and field theories of consciousness in neuroscience, which leads to the conclusion that Earth is conscious. Various theories of mind have been proposed by neuroscientists and philosophers alike in an attempt to qualify what consciousness is and what provides the basis for consciousness to occur. Support, in the form of data …

The Rhesus Macaque Corticospinal Connectome, Sydney Talmi

CMC Senior Theses

The corticospinal tract (CST), which carries commands from the cerebral cortex to the spinal cord, is vital to fine motor control. Spinal cord injury (SCI) often damages CST axons, causing loss of motor function, most notably in the hands and legs. Our preliminary work in rats suggests that CST circuitry is complex: neurons whose axons project to the lower cervical spinal cord, which directly controls hand function, also send axon collaterals to other locations in the nervous system and may engage parallel motor systems. To inform research into repair of SCI, we therefore aimed to map the entire projection pattern, …

Cortical Stimulation Mapping Of Heschl’S Gyrus In The Auditory Cortex For Tinnitus Treatment, Austin Huang

CMC Senior Theses

Tinnitus is the perception of sound in the absence of an actual sound stimulus. Recent developments have shifted the focus to the central nervous system and the neural correlate of tinnitus. Broadly, tinnitus involves cortical map rearrangement, pathological neural synchrony, and increased spontaneous firing rates. Various cortical regions, such as Heschl’s gyrus in the auditory cortex, have been found to be associated with different aspects of tinnitus, such as perception and loudness. I propose a cortical stimulation mapping study of Heschl’s gyrus using a depth and subdural electrode montage to conduct electrocorticography. This study would provide high-resolution data on abnormal …

Can A Comprehensive Transition Plan To Barefoot Running Be The Solution To The Injury Epidemic In American Endurance Runners?, Michael A. Scarlett

CMC Senior Theses

Fossils belonging to the genus Homo, dating as far back as two million years ago, exhibit uniquely efficient features suggesting that early humans had evolved to become exceptional endurance runners. Although they did not have the cushion or stability-control features provided in our modern day running shoes, our early human ancestors experienced far less of the running-related injuries we experience today. The injury rate has been estimated as high as 90% annually for Americans training for a marathon and as high as 79% annually for all American endurance runners. There is an injury epidemic in conventionally shod populations that …

Ccl11 As A Biomarker For The In Vivo Diagnosis Of Chronic Traumatic Encephalopathy, Robert Weissenfels

CMC Senior Theses

Chronic traumatic encephalopathy is the neurodegenerative disease that is ascribed to the long term development of cognitive, behavioral, emotional, and motor deficits as a result of the exposure to high amounts of sub concussive traumatic brain injuries. The disease has gained recent popularity in the media for its prevalence in American football as a response to recent research that has suggested the prominence of the disease in nearly every NFL player that is examined post mortem. This has produced a growing concern for the consequences of head impact and participation in contact sports. Despite media attention, little is currently known …

An Exploration Of The Adaptive Functions Of Dreams And Empirically-Based Methods Of Dream Interpretation, Isaac Roberts

CMC Senior Theses

This paper presents a meta-analysis of dream theory within psychology and neuroscience. The questions it attempts to answer are: what is the neuroscientific basis of dreaming? Why do dreams exist (do they have an adaptive function)? Could dreams possibly have no function? And, what is the best way to interpret a dream? The current analysis presents various theories relevant to each of these questions and compares their viability. It also briefly examines the origins of psychological thought on dreams and, towards the end, outlines the steps and empirical support for a well-regarded method of dream interpretation known as the cognitive …

Creativity, Laterality And Critical State Balance In Learning, Jenny Rock, Asher Flatt

The Transdisciplinary STEAM+ Journal

Understanding the intersecting cognitive pathways that are integral to ways of thinking, creating and functioning in both art and science is an important grounding for a STEAM educational approach. We combine three divergent concepts, including creativity, hemisphere laterality, and critical state theory, to argue for a more balanced approach to learning as part of a modern meaning-centered education in STEAM. Reviewing the concept of hemisphere laterality, or how the two hemispheres of our brain have different (though not disconnected) ways of processing sensory information, we note how these two means of interpreting the world have become unbalanced in traditional modes …

Understanding Huntington's Disease Using Machine Learning Approaches, Sonali Lokhande

KGI Theses and Dissertations

Huntington’s disease (HD) is a debilitating neurodegenerative disorder with a complex pathophysiology. Despite extensive studies to study the disease, the sequence of events through which mutant Huntingtin (mHtt) protein executes its action still remains elusive. The phenotype of HD is an outcome of numerous processes initiated by the mHtt protein along with other proteins that act as either suppressors or enhancers of the effects of mHtt protein and PolyQ aggregates. Utilizing an integrative systems biology approach, I construct and analyze a Huntington’s disease integrome using human orthologs of protein interactors of wild type and mHtt protein. Analysis of this integrome …

Toric Ideals, Polytopes, And Convex Neural Codes, Caitlin Lienkaemper

HMC Senior Theses

How does the brain encode the spatial structure of the external world?

A partial answer comes through place cells, hippocampal neurons which

become associated to approximately convex regions of the world known

as their place fields. When an organism is in the place field of some place

cell, that cell will fire at an increased rate. A neural code describes the set

of firing patterns observed in a set of neurons in terms of which subsets

fire together and which do not. If the neurons the code describes are place

cells, then the neural code gives some information about the …

Are Coloring Books Really Just For Kids? Investigating Possible Effects Of Specific Pattern Coloring On Conceptual, Physiological And Behavioral Aspects Of Anxiety, Hannah Taylor

Scripps Senior Theses

This study examined the role of specific pattern coloring, such as coloring books for adults, on conceptual, behavioral and physiological measures of anxiety. Undergraduate female students (n = 8) had ECG electrodes and a respiration belt attached and completed the State Trait Anxiety Inventory (STAI) at five time points; at baseline, after an initial autobiographical anxiety induction, following a passive relaxation condition, after a repeat induction and then after a coloring condition. The participants were randomly split into a control and experimental group; the control group free colored while the experimental group colored in a mandala pattern. Participants had the …

From Rainman To Rainmaker: A Presentation Of Jim’S Journey And Rapidly Advancing Technologies: Integrating Proven Behavioral Therapies With Emergent Measurement And Testing Advances Will Result In Transformational Progress In Autistic Individuals, Richard Zajac

CMC Senior Theses

The autism treatment status quo was reviewed and accompanied by a narrative contextualizing past and present progress with my younger brother Jim’s journey with the condition, sharing proposed next steps for bettering the current state of affairs in the space. The impetus for this piece was to share in the lessons of Jim’s life thus far and the revelations of those who have supported him, as well as to determine ways to create more impactful, lasting change in the limited window of early intervention therapy whilst empowering individuals on the spectrum to optimize for their skills and talents rather than …

Consumer Neuroscience: A Multi-Disciplinary Approach To Marketing Leveraging Advances In Neuroscience, Psychology And Economics, Bridget E. Blum

CMC Senior Theses

For decades, neuroscience has greatly contributed to our foundational understanding of human behavior. More recently, the findings and methods of neuroscience have been applied to study the process of decision-making in order to offer advanced insights into the neural mechanisms that influence economic and consumer choices. In this thesis, I will address how customized marketing strategies can be enriched through the integration of consumer neuroscience, an integrative field anchored in the biological, cognitive and affective mechanisms of consumer behavior. By recognizing and utilizing these multidisciplinary interdependencies, marketers can enhance their advertising and promotional mix to elicit desired neural and affective …

Role Of Alpha Oscillations In Reweighting Multiple Attributes During Choice, Samuel I. Dunham

CMC Senior Theses

In our everyday lives, we must often weigh the different attributes of items in order to select the item that best fits our current goals, allowing us to make optimal decisions. Construal Level Theory proposes a psychological mechanism for re-weighting attributes, utilizing selective attention as the process by which we implement self-control. It has been hypothesized that switching attention between attributes is facilitated by the suppression of cortical oscillations over posterior brain regions within the alpha (8-12 Hz) frequency range. To test this idea, we re-examined previously collected whole-brain electroencephalography (EEG) data from a dietary choice experiment in which participants …