Marine Biology Commons^™

Ocean Connectivity And Habitat Characteristics Predict Population Genetic Structure Of Seagrass In An Extreme Tropical Setting, Udhi E. Hernawan, Kor-Jent Van Dijk, Gary A. Kendrick, Ming Feng, Oliver Berry, Christopher Kavazos, Kathryn Mcmahon

Research outputs 2022 to 2026

Understanding patterns of gene flow and processes driving genetic differentiation is important for a broad range of conservation practices. In marine organisms, genetic differentiation among populations is influenced by a range of spatial, oceanographic, and environmental factors that are attributed to the seascape. The relative influences of these factors may vary in different locations and can be measured using seascape genetic approaches. Here, we applied a seascape genetic approach to populations of the seagrass, Thalassia hemprichii, at a fine spatial scale (~80 km) in the Kimberley coast, western Australia, a complex seascape with strong, multidirectional currents greatly influenced by extreme …

Oxygen And Hydrogen Isotopic Evidence That KamaʻEhuakanaloa (LōʻIhi) Seamount Hydrothermal Systems Are Recharged By Deep Pacific Seawater, Eric W. Chan, Brianna A. Alanis, Christopher R. German, Darlene S. S. Lim, John A. Breier

School of Earth, Environmental, & Marine Sciences Faculty Publications

We observed negative and positive δ18O and δ2H deviations from fluids collected at Kamaʻehuakanaloa (previously known as Lōʻihi) seamount relative to Pacific seawater from the same depth. Hydrothermal vents on the crater floor of Pele's Pit at Kamaʻehuakanaloa, at a depth of 1320 m, had δ18O and δ2H values as low as −0.19‰ and −0.3‰, respectively. Seawater collected within the caldera, within a zone 45 m above the crater floor, had δ18O and δ2H values as high as 1.15‰ and 6.5‰, respectively. In comparison, Pacific seawater at 1200 m and 1400 m at nearby station ALOHA exhibit intermediate δ18O and …

Life Cycle Assessment Of Calcium Oxide Pretreatment Of Corn Stover With Carbon Dioxide Neutralization For Ethanol Production, Jikai Zhao, Danyi Feng, Juhee Lee

School of Earth, Environmental, & Marine Sciences Faculty Publications

This work used life-cycle assessment (LCA) to determine the environmental and human health impacts of four ethanol production scenarios (S1: CaO pretreatment + H2SO4 neutralization + C6 yeast fermentation; S2: CaO pretreatment + CO2 neutralization + C6 yeast fermentation; S3: CaO pretreatment + H2SO4 neutralization + C6/C5 yeast fermentation; and S4: CaO pretreatment + CO2 neutralization + C6/C5 yeast fermentation), with the functional unit being 1 kg of 95 % ethanol. The LCA results showed that the total ozone depletion, global warming potential, smog, acidification, eutrophication, and ecotoxicity values were comparable when CO2 or H2SO4 were used to adjust the …

Decreased Moderate To Vigorous Physical Activity Levels In Children With Asthma Are Associated With Increased Traffic-Related Air Pollutants, Juan Aguilera, Soyoung Jeon, Amit U. Raysoni, Wen-Whai Li, Leah D. Whigham

School of Earth, Environmental, & Marine Sciences Faculty Publications

People with asthma, particularly young children, are more adversely aected by trac emissions-and regular exercise reduces asthma symptoms and improves lung function. We studied the relationship between air pollution and objectively measured physical activity in children with asthma who were attending a school near a freeway. We continuously monitored air pollutants-PM2.5, PM10, nitrogen dioxide (NO2), and ozone (O3)-at the school for 10 weeks and measured physical activity levels via accelerometry in children (n = 12, ages 6-12 years). Concentrations of PM2.5, PM10, and NO2 were negatively associated with moderate to vigorous physical activity (PM2.5 and PM10: p < .001; NO2: p = …

Linking The Metabolic And Ecological Fate Of Caribbean Ciguatoxins And Related Neurotoxins In Reef Herbivores, Jessica K. Gwinn

Graduate Theses and Dissertations (2019 - present)

Ciguatera poisoning (CP) is one of the most prominent seafood-borne illnesses worldwide, affecting between 25,000–500,000 people annually. Ciguatera is caused by the ingestion of seafood contaminated with algal-derived ciguatoxins (CTX), the precursors of which are produced by benthic and toxigenic dinoflagellates in the genera Gambierdiscus and Fukuyoa. These compounds enter marine food webs through herbivory and are subsequently transferred to higher trophic levels, undergoing complex metabolic biotransformations, which produce structurally related CTX derivatives. Consumption of CTX induces a variety of severe neurological, gastrointestinal, and/or cardiovascular symptoms beginning within hours and lasting for weeks to months following exposure. Despite the impact …

Cadmium And Salinity Stressor Antagonism On Vallisneria Neotropicalis, Christopher P. Mikolaitis

Graduate Theses and Dissertations (2019 - present)

Submerged macrophytes form the foundation of freshwater ecosystems. These organisms are sessile and are very susceptible to shifts in their environment. Heavy metals are of particular concern as they can be sequestered indefinitely in sediments and are readily taken up by rooted vegetation. In the presence of saltwater intrusions, these metals can interact with salt ions potentially changing their availability to submerged vegetation. In this study a freshwater macrophyte, Vallisneria neotropicalis, was used as a test species for interactive effects between Cd, a non-essential heavy metal, and salt stress. The metrics used to establish the individual as well as …

Applications Of Environmental Dna (Edna) To Detect Subterranean And Aquatic Invasive Species: A Critical Review On The Challenges And Limitations Of Edna Metabarcoding, Sakib Tahmid Rishan, Richard Kline, Md Saydur Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

The world is struggling to solve a devastating biodiversity loss that not only affects the extinction of treasured species and irreplaceable genetic variation, but also jeopardizes the food production, health, and safety of people. All initiatives aimed to conserve biodiversity rely heavily on the monitoring of both species and populations to get accurate spatial patterns and overall population assessments. Conventional monitoring techniques, such as visual surveys and counting individuals, are problematic due to challenges in identifying cryptic species or immature life stages. Environmental DNA (eDNA) is a relatively new technology that has the potential to be a faster, non-invasive, and …

State Of The Fisheries: Status Reports And Aquatic Resources Of Western Australia 2021/22, Department Of Primary Industries And Regional Development, Western Australia, S J. Newman, B S. Wise, K G. Santaro, D J. Gaughan

Status Reports of the Fisheries and Aquatic Resources

Aquatic resources within Western Australia (WA) are in good condition, and this has positioned WA as a global leader in sustainable fisheries management. The sustainable fisheries of WA continue to support our strong economy and regional communities. Nonetheless, the lack of a consistent approach to build in the knowledge of Traditional Owners remains a gap in our longer-term fisheries science in Western Australia.

Climate change and climate variability continues to impact fish stocks, challenging our ability to effectively monitor, assess, and manage fish stocks. We are continually working with our stakeholders, and the broader community to be adaptive, responsive, and …

Evaluating The Use And Performance Of Marine Protected Areas To Conserve Reef Fish Biodiversity In The Caribbean, Mathias Tjarko Cramer

Theses and Dissertations

Reef fishes are an integral part of life in the Caribbean, fulfilling essential roles in their native marine ecosystems and the many human communities that neighbor them. Perhaps most directly to humans, reef fishes and their fisheries are an essential source of dietary protein, and further support local human communities through employment opportunities. More indirectly, reef fishes fulfill numerous ecological roles that help maintain their native reef ecosystems, which, in turn, confer benefits to humans. For example, a recent analysis estimated that every square kilometer of coral reef generates an average annual income of $473,000 (USD), which would represent 23 …

Three-Dimensional Higher-Order Compressive Sensing For Raypath Separation In An Acoustic Waveguide, Fengyan Zhong

Journal of Marine Science and Technology–Taiwan

In an acoustic waveguide, the separation of multiple raypaths, especially close raypaths, is a challenging task in the presence of colored noise due to interference in the acoustic eld. In this paper, a three-dimensional higher-order compressive sensing method for raypath separation is proposed. The method is applied on an array-to-array experimental conguration where both emitter and reception arrays are used. With the array-to-array conguration, the raypaths are characterized by three parameters including arrival direction, departure direction, and arrival time. Furthermore, the performance of the proposed algorithm is illustrated by simulations and experiments. The numerical results based on simulation illustrate that …

Projection Of Sea Surface Temperature Based On Empirical Mode Decomposition And Its Application In Typhoon Number Forecast, Wen-Cheng Huang, Jung-Chen Lee

Journal of Marine Science and Technology–Taiwan

The primary objective of this paper is to demonstrate the applicability of empirical mode decomposition (EMD) in projecting non-stationary daily sea surface temperature (SST) series, and the other is to apply the projected series of SST to estimate the number of typhoons. The study focuses on an area ranging from 5°N~25°N and 110°E~170°E, collecting daily sea temperature data and typhoons records within this region. The findings conclusively indicate that the EMD-based data generation method proposed in this paper can effectively addresses the limitations of previous hydrological models in generating non-stationary series, signifying a significant advancement in hydrological time series modeling …

Impact Of Sediment Diversion For Coastal Restoration On Nitrogen And Phosphorus Biogeochemical Cycling In Coastal Louisiana, Usa, Mercedes M. Pinzon Delgado

LSU Master's Theses

Wetlands provide essential ecosystem services and functions, including improving surface water quality through nutrient removal. Louisiana experienced ~4,800 km² of coastal wetland loss between 1932 and 2016 due to high relative sea level rise and reduced sediment input from the Mississippi River (MR). The 2023 Louisiana Coastal Master Plan aims to restore Louisiana's degraded coastline through restoration projects, including sediment diversions. The Mid-Barataria Sediment Diversion project will reconnect MR sediment-laden water with Barataria Basin degrading marshes. The diversion will also deliver nitrate (NO₃^-) and soluble reactive phosphorus (SRP) to this basin, potentially negatively impacting water quality. …

The Effect Of Acidic Ph On Growth Kinetics, Biomass Productivity, And Prima-Ry Metabolite Contents Of Euglena Sp., Istini Nurafifah, Muhammad Andhi Hardianto, Tia Erfianti, Ria Amelia, Khusnul Qonita Maghfiroh, Dedy Kurnianto, Dwi Umi Siswanti, Brilian Ryan Sadewo, Renata Adaranyssa Egistha Putri, Eko Agus Suyono

Makara Journal of Science

Euglena is a microalga with the potential to be an environmentally friendly renewable energy resource. The pH value is a crucial factor in micro-algal cultivation. Changes in pH affect the growth and development of microalgae, including the production of biomass and primary metabolites, such as proteins, carbohydrates, and lipids. In this study, Euglena sp. was grown on Cramer-Myers medium and subjected to various acidic conditions. This study aimed to determine the effect of pH on the growth kinetics, biomass, carbohydrate, lipid, and protein contents of Euglena sp. The Euglena sp. culture was optimized at various pH values of 2.5, 3.5, …

Nutrient-Rich Submarine Groundwater Discharge Increases Algal Carbon Uptake In A Tropical Reef Ecosystem, Florybeth Flores La Valle, Julian M. Jacobs, Florence I. Thomas, Craig E. Nelson

All Faculty Open Access Publications

Submarine groundwater discharge (SGD) in high volcanic islands can be an important source of freshwater and nutrients to coral reefs. High inorganic nutrient content is generally thought to augment primary production in coastal systems but when this is delivered via a freshwater vector as is the case with SGD in this study, the effects on productivity are unclear. In the current literature, there is limited evidence for a direct association between SGD and primary productivity of reefs. To elucidate the response of primary productivity to SGD, we conducted spatially and temporally explicit in situ benthic chamber experiments on a reef …

It Pays To Be Bumpy: Drag Reducing Armor In The Pacific Spiny Lumpsucker, Eumicrotremus Orbis, R. C. Hoover, Olivia H. Hawkins, Jack Rosen, Conrad D. Wilson, Callie H. Crawford, Meghan Holst, Jonathan M. Huie, Adam P. Summers, Cassandra M. Donatelli, Karly E. Cohen

Engineering Faculty Articles and Research

Armor is a multipurpose set of structures that has evolved independently at least 30 times in fishes. In addition to providing protection, armor can manipulate flow, increase camouflage, and be sexually dimorphic. There are potential tradeoffs in armor function: increased impact resistance may come at the cost of maneuvering ability; and ornate armor may offer visual or protective advantages, but could incur excess drag. Pacific spiny lumpsuckers (Eumicrotremus orbis) are covered in rows of odontic, cone-shaped armor whorls, protecting the fish from wave driven impacts and the threat of predation. We are interested in measuring the effects of …

The Economic Value Of Sea Otters And Recreational Tourism In A California Estuary, Jessica A. Fujii, Charles S. Colgan, Anthony Castelletto, Michelle M. Staedler, Amy G. Wolfrum, Kyle S. Van Houtan

Journal of Ocean and Coastal Economics

The recovery of marine megafauna can lead to improved ecosystem function and services, but not all stakeholders may benefit equally. Quantifying the local economic value of a species’ presence may appeal to broader range of stakeholders when developing conservation strategies. This study aims to examine the economic effect recreational activities can have on a local region, and to determine what role the presence of southern sea otters (Enhydra lutris nereis) had on the value visitors placed on the visit and the area’s preservation. We surveyed visitors to Elkhorn Slough, a small estuary in California known for diverse wildlife, …

On The Edge Of The "Er-Ocean" State, Mariesa Travers

Masters Theses

This thesis will explore how hard coastal infrastructure methods can be redesigned by softening the coastal edge to support the ecosystem and enhance public access to the beach. By referencing and arguing against techniques used by the U.S. Army Corps of Engineers (USACE) as a solution to deal with coastal erosion, this process will propose a regenerated design system. Through a series of material experiments, this research works with natural processes and flows, to create transitory systems that erode and ebb with the coast.

Spatial Variation And Antecedent Sea Surface Temperature Conditions Influence Hawaiian Intertidal Community Structure, Rebecca J. Ward, T. Erin Cox, Anuschka Faucci, Florybeth Flores La Valle, Joanna Philippoff, Jessica L. B. Shaefer, Ian M. Ware, Matthew L. Knope

All Faculty Open Access Publications

Global sea surface temperatures (SSTs) are increasing, and in Hawaiʻi, rates of ocean warming are projected to double by the end of the 21st century. However, current nearshore warming trends and their possible impacts on intertidal communities are not well understood. This study represents the first investigation into the possible effects of rising SST on intertidal algal and invertebrate communities across the Main Hawaiian Islands (MHI). By utilizing citizen-science data coupled with high-resolution, daily SST satellite measurements from 12 intertidal sites across the MHI from 2004–2019, the response of intertidal algal and invertebrate abundance and community diversity to changes in …

Behavior Changes And Lc50 Of Dried Garlic (Allium Sativum) Acute Toxicity In Nile Tilapia (Oreochromis Niloticus) Juvenile [Research Note], Gregoria Erazo Pagador, Haydee Rose Dumaran Paciente, Blan Jericho Caloyloy

The Philippine Agricultural Scientist

Plant-based compounds are emerging substitutes for chemical treatments in aquaculture since they are known to cause less harm to both the environment and its organisms. Garlic (Allium sativum) is a popular herb that has a broad range of uses, especially in the control and treatment of bacterial and parasitic diseases. However, its toxicity to tilapia is not well-studied. Hence, this study was conducted to test the toxicity levels of garlic powder in juvenile Nile tilapia (Oreochromis niloticus) by determining the cumulative mortality and median lethal concentration (LC₅₀). Test fish were exposed through immersion in …

Reproduction, Early Development, And Larval Rearing Of The Climbing Perch Anabas Testudineus (Teleostei: Anabantidae) In Captivity, Frolan A. Aya, Reylan C. Gutierrez, Luis Maria B. Garcia

The Philippine Agricultural Scientist

Induced spawning, early development, and larval rearing of the climbing perch Anabas testudineus were examined under captive conditions. Five female climbing perch [125.33 ± 3.27 mm SL; 70.67 ± 5.59 g BW] were paired with apparently mature males (108.50 ± 3.97 mm SL; 39.27 ± 4.70 g BW) and induced to spawn with 5,000 IU human chorionic gonadotropin (hCG) + 0.5 mL Ovaprim kg BW^-1. All hCG + Ovaprim-injected fish spawned 9 – 11 h after hormone administration but saline-injected fish (control group) failed to spawn. Mean egg production per female, fertilization and hatching rates, and larval production …

Effects Of Intertidal Position On The Response To Oxygen And Desiccation Stress In The Common Acorn Barnacle, Balanus Glandula, Megan M. Dotterweich

Master's Theses

Sessile invertebrates in the rocky intertidal experience intermittent periods of air exposure due to tidal flux, presenting risks of temperature extremes, hypoxia, nutrient limitation, and most dangerously, desiccation. Microscale variation in severity and frequency of these risks is widely dependent on vertical position within the intertidal zone. Common acorn barnacles (Balanus glandula) have a wide vertical distribution in the intertidal, creating large differences in microhabitat between the highest and lowest individuals in the population. This study set out to explore whether tidal position dependent differences exist in the response to oxygen and desiccation stress in B. glandula. …

Marine Protected Areas And Oceanographic Variability: Impacts On Blue Rockfish (Sebastes Mystinus) And The Human Dimensions Of Collaborative Fisheries Research, Erin M. Johnston

Master's Theses

Fishing pressure and environmental variability are two of the most impactful drivers of fish populations worldwide. It is critical to effective management to understand the intersection between the two and how each may affect fish population dynamics, especially for exploited nearshore species like rockfishes (Sebastes spp.). This is especially true as models indicate that global climate change will dramatically increase the frequency and severity of large-scale oceanographic perturbations. We were interested in whether we could detect changes in relative abundance of nearshore rockfishes relative to large-scale oceanographic events using a broad-scale index like the Multivariate Ocean Climate Indicator …

Marginal Reef Systems: Resilience In A Rapidly Changing World, Nicola K. Browne, Andrew G. Bauman

Marine & Environmental Sciences Faculty Articles

No abstract provided.

Practical Solutions To The Invasion Of Lionfish In Utila, Honduras: Science, Education, Food, And Jewelry, Carolyn Corley

Undergraduate Honors Theses

Lionfish (Pterois sp.) are invasive species capable of devastating coral reef ecosystems due to their lack of predators, large appetites, generalist diet, high fecundity, and rapid spawning rates. As lionfish have expanded their distribution across the Caribbean, many conservation groups have taken it upon themselves to systematically remove these predators from environments where they are threatening native species. However, few have involved the community the way I observed while interning with the Whale Shark and Oceanic Research Center in Utila, Honduras. Protecting coral reefs is extremely important, especially in small communities like Utila, where the majority of people’s …

Does Artificial Lighting Cause Sea Turtle Hatchling Disorientations?, Kate Hickey

Biology Student Scholarship

Sea turtle hatchlings run into obstacles from the minute they emerge from their shell. They have a 1 in 1,000 survival rate and new obstacles are on the horizon. Coastal development is increasing and is not planning on slowing down. It supports and funds tourism, but has some negative implications on the wildlife that uses this area, like sea turtles. A particular problem with development is the artificial lighting it emits which is effecting sea turtles nesting. When the hatchlings emerge from the nest, they use the horizon and moon to guide them in the direction of the sea. The …

Interactions Between Marine Megafauna And Plastic Pollution In Southeast Asia, Lucy C.M. Omeyer, Emily Duncan, Neil Angelo S. Abreo, Jo Marie V. Acebes, Lea A. Angsinco-Jimenez, Sabiqah T. Anuar, Lemnuel V. Aragones, Gonzalo Araujo, Luis R. Carrasco, Emilyn Q. Espiritu

Environmental Science Faculty Publications

Southeast (SE) Asia is a highly biodiverse region, yet it is also estimated to cumulatively contribute a third of the total global marine plastic pollution. This threat is known to have adverse impacts on marine megafauna, however, understanding of its impacts has recently been highlighted as a priority for research in the region. To address this knowledge gap, a structured literature review was conducted for species of cartilaginous fishes, marine mammals, marine reptiles, and seabirds present in SE Asia, collating cases on a global scale to allow for comparison, coupled with a regional expert elicitation to gather additional published and …

The Effect Of Water Temperature On Tiger Shark Location, Philip Gelso

Biology Student Scholarship

The tiger shark is a keystone species in its ecosystem. As an apex predator, the tiger shark keeps the entire ecosystem in balance such as maintaining seagrass and coral reef habitats. The rise of ocean surface temperatures have become an issue over the past decades due to the increase in energy from the sun trapped by greenhouse grasses. This change in ocean surface temperature can have detrimental impacts on the ocean environment and the life cycles of many species including the tiger shark. Therefore, this project evaluates the change in location of tiger sharks in relation to water temperature.BIO …

A Mathematical Model For Wound Healing In Reef-Building Coral Pocillopora Damicornis, Quintessa Hay, Luke Gardner, Eunice Pak, Liza M. Roger, Rebecca A. Segal, Anna Shaw, Nastassja A. Lewinski, Angela M. Reynolds

Biology and Medicine Through Mathematics Conference

No abstract provided.

Connecting Social And Ecological Systems In Small-Scale Fisheries In The Philippines, Sara Eisler Marriott

Dissertations

Nearly 50% of all marine fish capture in the Philippines is from artisanal fisheries, most of which is un- or under-reported. As in many emerging nations around the world, the Philippines cannot fully address overfishing by managing only half of the catch that comes from commercial fisheries. Marine reserves are a popular governance strategy for conservation and of growing interest for fisheries management. Many marine reserves in the Philippines, however, are not considered effective. In 2014, Rare, an international NGO, implemented a community-based management program to increase the effectiveness of the marine reserves, and while it found biomass increased, there …

A Deeper Understanding Of Noise Effects On Cetaceans, Jason N. Bruck

Faculty Publications

Recent research with cetaceans under human care is illuminating just how dolphins are affected by human-made noise both in terms of their ability to cooperate as well as their ability to habituate to such noise. This research is providing granular detail to regulators assessing the problems associated with anthropogenic effects and is highlighting a role for behavior/cognition research in conservation.