Marine Biology Commons^™

Wageningen Aquaria/Microcosm Experiments, Benthic Foraminifera Assemblage And Stable Isotope Measurements, Patrick Schwing, David J. Hollander

C-IMAGE data

Dataset contains benthic foraminifera assemblage and stable isotope measurements. Stable isotope measurements are presented in δ13C and δ18O (‰). Diversity indices include Shannon, Fisher’s Alpha and evenness. Benthic foraminifera abundance is reported as individuals per unit mass (indiv./g).

First Record Of Black Corals (Antipatharia) In Shallow Coastal Waters Of Northern Chile By Means Of Underwater Video, Matthias Gorny, Erin E. Easton, Javier Sellanes

School of Earth, Environmental, & Marine Sciences Faculty Publications

This record is the first report of black corals (Antipatharia) in shallow waters of the continental coast of Chile, and extends their geographical range in shallow waters of the upper continental shelf of South America by ~3000 km from Ecuador (~1°S) to Coquimbo, Chile (~29°S). Specimens were observed between 70 and 107 m on three underwater video transects executed in July 2016 on the rocky reef El Toro, which is located about 65 km northwest of Coquimbo. The images were taken with the cameras of a remotely operated vehicle (ROV) at a distance of about two meters from the rocks. …

Ms Analysis Of A Dilution Series Of Bacteria: Phytoplankton To Improve Detection Of Low Abundance Bacterial Peptides, Emma Timmins-Schiffman, Molly P. Mikan, Ying Sonia Ting, H. Rodger Harvey, Brook L. Nunn

OES Faculty Publications

Assigning links between microbial activity and biogeochemical cycles in the ocean is a primary objective for ecologists and oceanographers. Bacteria represent a small ecosystem component by mass, but act as the nexus for both nutrient transformation and organic matter recycling. There are limited methods to explore the full suite of active bacterial proteins largely responsible for degradation. Mass spectrometry (MS)-based proteomics now has the potential to document bacterial physiology within these complex systems. Global proteome profiling using MS, known as data dependent acquisition (DDA), is limited by the stochastic nature of ion selection, decreasing the detection of low abundance peptides. …

Trophic Shifts Introduced To The Saco River Estuary By A Central Secondary Consumer, The Invasive European Green Crab (Carcinus Maenas), Andrew Paul Davidsohn

All Theses And Dissertations

The European green crab (Carcinus maenus) is one of the most notorious invasive species found along the East coast of the United States. Green crabs were introduced to the US in the 1800s when they supposedly rode in ballast water across the Atlantic Ocean. Green crabs are native to the Atlantic coasts of Europe and Northern Africa. Once established on the Atlantic coast of North America, they started to migrate mostly north, and will continue to do so with warming waters due to climate change. (Glude 1955). Warmer winters will lead to greater crab egg survival, increasing the …

Foraging Ecology Of Parrotfishes In The Greater Caribbean: Impacts Of Specialization And Dietary Preferences On Marine Benthic Communities, Madelyn V. Roycroft

Master's Theses

Coral reefs are one of the world’s most diverse yet heavily impacted marine ecosystems. As a result of many direct and indirect stressors, coral reefs have experienced major degradation over the last several decades. Declines in coral reefs in the Caribbean have been particularly acute and generally associated with the loss of key herbivores and an increase in algae. Herbivorous fishes such as parrotfishes can positively impact coral reefs by removing algae that compete with corals for light and space. However, many parrotfishes are also important coral predators. Predation on corals, known as corallivory, can adversely affect coral growth, reproduction …

The Impact Of Copper On Non-Indigenous And Native Species Of Suspension-Feeding Bivalves In Mission Bay, San Diego, California, Brian Juhl

Theses

Native (Chione californiensis) and non-indigenous bivalve species [Musculista senhousia (now known as Arcuatula senhousia), and Venerupis philippinarum] were collected from Mission Bay, San Diego, California and exposed to copper contaminated water at estimated concentrations of 0 ppb, 25 ppb, and 50 ppb over the course of two experimental periods of 18 days and 12 days. Bivalves were placed in tanks in a temperature controlled environment, and measurements of a number of parameters were taken during and after the exposure to copper: survivorship, feeding rates, growth, mucus production, and tissue copper concentrations for the entire body, …

The Temporal And Spatial Dynamics Of Larval Supply, Settlement, And Adult Populations Of Chthamalus Fissus Within The La Jolla, California Rocky Intertidal, Catharine Hargenrader

Theses

The role of post-settlement processes in benthic invertebrate recruitment dynamics has been well established; however, more recently, studies have been resolving the pre-settlement processes and environmental variables that may shape initial settlement. We examined the major space occupying barnacle Chthamalus fissus to determine the spatial and temporal dynamics of settlement in relation to larval supply, adult populations, and habitat characteristics (including elevation as a proxy for immersion, proximity to water’s edge, and the availability of free space) within the La Jolla, CA rocky intertidal. With respect to habitat characteristics, we investigated the influence of available free space on the dynamics …

Geography And Island Geomorphology Shape Fish Assemblage Structure On Isolated Coral Reef Systems, Scott Bennett, Andrew R. Halford, Howard Choat, Jean-Paul A. Hobbs, Julia Santana-Garcon, Anthony M. Ayling, Euan S. Harvey, Stephen J. Newman

Fisheries Research Articles

We quantify the relative importance of multi-scale drivers of reef fish assemblage structure on isolated coral reefs at the intersection of the Indian and Indo-Pacific biogeographical provinces. Large (>30 cm), functionally-important and commonly targeted species of fish, were surveyed on the outer reef crest/front at 38 coral reef sites spread across three oceanic coral reef systems (i.e. Christmas Island, Cocos (Keeling) Islands and the Rowley Shoals), in the tropical Indian Ocean (c. 1.126 x 106 km2). The effects of coral cover, exposure, fishing pressure, lagoon size and geographical context, on observed patterns of fish assemblage structure were …

Assessment Of Mesophotic Coral Ecosystem Connectivity For Proposed Expansion Of A Marine Sanctuary In The Northwest Gulf Of Mexico: Larval Dynamics, Lysel Garavelli, Michael S. Studivan, Joshua D. Voss, Alyson Kuba, Joana Figueiredo, Laurent M. Cherubin

Marine & Environmental Sciences Faculty Articles

In coral reef ecosystems, mesophotic coral habitat (>30 m to the end of the photic zone) are extensions of shallow reefs and contribute to the persistence of coral reef populations. In the North West Gulf of Mexico (NW GOM), the Flower Garden Banks National Marine Sanctuary (FGBNMS) is an isolated reef ecosystem comprising contiguous shallow and mesophotic reefs habitats on two central banks along the margin of the continental shelf. A future expansion of the sanctuary is proposed to include additional mesophotic banks and aims at building a network of protected areas in the NW GOM to ensure the …

Effect Of Adult Chemical Cues On Molting Of Fiddler Crab Megalopae In Low Salinity Seawater, Sydney Rilum

Undergraduate Honors Theses

Three species of fiddler crabs, Uca minax, U. pugnax, and U. pugilator, are commonly found in estuaries along the Atlantic coast, each with distinct adult habitats differing in salinity and sediment grain size. Prior research has found evidence for larvae exhibiting selective settlement; however, the degree to which and the method by which they choose their species-appropriate habitat to settle in is still unknown. Additionally, a recent study determined that chemical cues from adult crabs stimulate molting in field-caught fiddler crab megalopae, as previously determined in lab-reared megalopae; however, in 35 ppt seawater, few U. minax molted. …

Planktonic Diatom Species Succession In San Francisco Bay (September 2015 - December 2017), Theresa Keith

Undergraduate Honors Theses

Since Hutchinson first described the “Paradox of the Plankton” in 1961, research has been done to determine how and why the coexistence of so many different species of phytoplankton is possible. A critical part of this question is species succession, or how the assemblage of phytoplankton in a region changes over time. This study examines the succession of planktonic diatoms in San Francisco Bay, CA (USA) from September 2015 through December 2017 using phytoplankton samples and environmental data. Periodic sampling was conducted at a site in the Golden Gate Strait and taxa were identified using light microscopy and scanning electron …

The Distribution, Abundance, And Gut Microbiome Of Ribbed Mussel, Geukensia Demissa, Across Natural And Restored Salt Marshes In Jamaica Bay, New York, Bethany Freynk

Student Theses and Dissertations

Coastal wetlands perform valuable functions by protecting shorelines from floodwaters and storm surges, providing habitats for marine species, and improving local water quality. Unfortunately, over half of the area of global wetlands has been lost over the past century. Locally, in Jamaica Bay (Queens, NY), loss of wetlands has exceeded 98%. Restoration of Jamaica Bay marshes began in 2003. Ribbed mussels, Geukensia demissa, live symbiotically with marsh plants and have been shown to stabilize sediments and provide organic nutrients that enhance marsh plant growth. Mussels are suspension feeders, which collect algae from seawater and deposit organic matter in marsh sediments. …

A Temporal Analysis Of A Deep-Pelagic Crustacean Assemblage (Decapoda: Caridea: Oplophoridae And Pandalidae) In The Gulf Of Mexico After The Deepwater Horizon Oil Spill, Devan Nichols

HCNSO Student Theses and Dissertations

In 2010, the largest oil spill in U.S history occurred off the coast of Louisiana from April 20^th to September 19^th, when the well was declared officially sealed by the U.S Coast Guard, after releasing more than 4.4 million barrels of crude oil into the Gulf of Mexico (GOM) (McNutt et al., 2012). This spill was unique because it occurred in deep water approximately 1500 m below the ocean surface. Virtually nothing is known about the effects of oil spills on marine life in the deep sea, and there are limited data on mesopelagic and bathypelagic animals …

Fine Grained Compositional Analysis Of Port Everglades Inlet Microbiome Using High Throughput Dna Sequencing, Lauren M. O'Connell, Song Gao, Donald S. Mccorquodale Jr., Jay M. Fleisher, Jose Lopez

Marine & Environmental Sciences Faculty Articles

Background

Similar to natural rivers, manmade inlets connect inland runoff to the ocean. Port Everglades Inlet (PEI) is a busy cargo and cruise ship port in South Florida, which can act as a source of pollution to surrounding beaches and offshore coral reefs. Understanding the composition and fluctuations of bacterioplankton communities (“microbiomes”) in major port inlets is important due to potential impacts on surrounding environments. We hypothesize seasonal microbial fluctuations, which were profiled by high throughput 16S rRNA amplicon sequencing and analysis.

Methods & Results

Surface water samples were collected every week for one year. A total of four samples …

Ecological Correlates Of Community Structure In Seagrass-Associated Fishes In North Biscayne Bay And Port Of Miami, Florida, Elizabeth F. Colhoun

HCNSO Student Theses and Dissertations

Seagrass habitats are critical habitat for many fish species and are currently threatened by anthropogenic and natural factors, such as coastal development, pollution, global climate change, and sea level rise. There are few studies that have tracked long- term changes in seagrass habitat and their associated fish communities. This project addressed this need using data collected by the United States Geological Survey (USGS) from two South Florida sites, North Biscayne Bay, FL (NBB) and Port of Miami, FL (POM). The USGS sampling was part of ongoing monitoring projects designed to assist future management decisions that would enhance the protection of …

Assessment Of Metals In Tissues Of Marine-Associated Birds In South Florida, Caitlyn A. Nay

HCNSO Student Theses and Dissertations

Seabirds – broadly defined as any bird species associated with the marine environment – are exposed to a wide range of environmental contaminants. Vectors of exposure to metal pollution include by external contact, inhalation, and most often ingestion of food and incidental seawater. Seabirds are often considered marine ecosystem bioindicators due to their high trophic position, relatively long lifespan, and wide geographic ranges. We examined the concentration of total mercury (THg), lead (Pb), and cadmium (Cd), in the kidney, liver, breast muscle, and feathers of seven species of juvenile and adult seabirds commonly found in South Florida: brown pelican Pelecanus …

Evaluating The Efficacy Of Using Geomorphology As A Surrogate To Benthic Habitat On The Miami Terrace, Kim D. Smith

HCNSO Student Theses and Dissertations

The deep-sea is a vast and relatively sparsely characterized domain. As little as 0.01% of deep-sea benthic habitats have been characterized in detail. Characterizing the distribution of organisms and environmental components of the deep-sea is pivotal to the creation and implementation of successful resource management. Benthic habitat maps are a good method to inventory and characterize deep-sea habitats. Recent advances in technology, such as multibeam sonar and remotely operated vehicles (ROVs), have allowed for greater understanding of these ecosystems. As it is difficult and expensive to collect data deep-sea benthic community composition, environmental surrogates of biological data would be economically …

Efficacy Of Magnesium Enriched Artificial Substrate For Oyster Restoration, Matthew Elder

Masters Theses, 2010-2019

The eastern oyster, Crassostrea virginica, is a keystone species that has undergone a large (> 95%) population decline due to overharvest, pollution, and disease. Restoration efforts focus on alternative larval attachment substrates such as concrete, to supplement the loss of natural oyster shell. Magnesium is a component of bivalve shells and its presence in the environment has shown to be important to the growth of mussels, but the same relationship has not been studied in oysters. Assuming that magnesium can be assimilated from the substrate on which the organism is growing, or that ions of magnesium are leached into …

Patterns In Caribbean Coral Spawning, Anna C. Jordan

HCNSO Student Theses and Dissertations

Most corals worldwide are broadcast spawners that rely on synchronous gamete release for successful fertilization. Spawning synchrony may also decrease the probability of heterospecific fertilization that may produce maladaptive hybrids. Despite the importance of reproductive timing, researchers have only recently begun to collect spawning data across coral species in the Caribbean, but these data remain to be analyzed. This study investigates interannual, seasonal, and environmental patterns that may influence Caribbean scleractinian spawning times. The number of spawning observations varies widely among location and species. Most spawning observations were collected in Florida, Curaçao, and Flower Garden Banks National Marine Sanctuary. Acropora …

Population Dynamics Of The Threatened Staghorn Coral, Acropora Cervicornis, And The Development Of A Species-Specific Monitoring Protocol, Elizabeth Goergen

HCNSO Student Theses and Dissertations

Historically, Acropora cervicornis was found in high densities on many Caribbean, Florida, and Gulf of Mexico reefs. A disease outbreak in the late 1970s and 80s caused up to 99% loss of A. cervicornis cover at some sites, leaving populations sparsely distributed throughout its range and typically found as isolated colonies. Even though populations are depauperate causing a decrease in sexual reproduction, its fast growth rate and ability to reproduce through asexual fragmentation affords this species the potential for quick recovery and population growth. However, limited to no natural recovery has been documented. Many of these populations are poorly studied …

Genetic Population And Evolutionary Dynamics Of The Angel Sharks, Squatina Spp., Cristin Keelin Fitzpatrick

HCNSO Student Theses and Dissertations

Once so abundant as to be called the ‘common’ angelshark, Squatina squatina has been extirpated from nearly the entirety of its historical range, from the eastern North Atlantic, to the Mediterranean Sea [International Union for the Conservation of Nature (IUCN) Red List: Critically Endangered]. The angelshark now only occurs in any abundance in the waters surrounding the Canary Islands. I present the first genetic assessment of the angelshark’s population dynamics and diversity from three locations within the Canary Islands archipelago: Gran Canaria, Tenerife, and Lanzarote. Using a suite of individual mitochondrial genome regions [Control region (CR), NADH dehydrogenase subunit 2 …

Biological And Abiotic Factors Influencing Cetacean Mass Strandings In The Northeastern United States, Octavia Williams

HCNSO Student Capstones

Marine mammal strandings are frequent occurrences along many coastal areas around the world. The significance of stranded cetaceans has been of interest since around 300 B.C. when philosophers, like Aristotle, pondered why marine mammals, including whales, dolphins and porpoise beach themselves; and famous authors, like Henry David Thoreau, whose fascination in mammal strandings lead him to write a book about these mass occurrences off the coast of Cape Cod. Numerous hypothetical theories have been developed to explain these mass stranding phenomena. Though the causes of mass strandings remain unresolved, recent investigations suggest contributing factors could include environmental elements. Less emphasis …

Impacts Of Educational Programming At Dolphins Plus On Visitor Knowledge, Attitude And Behavior, Carley Rice

Masters Theses, 2010-2019

Zoos, aquariums, and similar institutions have been transitioning for many years from venues of entertainment to institutions of informal environmental education. This transition has led to these institutions claiming missions of conservation and education. The conservation education impacts of zoos and aquariums are not well understood. The literature is limited and at times inconclusive. Claims of conservation and education should be formally evaluated through survey research projects to determine validity. These types of studies will shed light on these institutions and aid in improving educational programs to best benefit conservation of wildlife, habitats and the environment. The purpose of this …

Waking Students Up With Explorations Of Metabolic Dormancy: A Pilot Study Of The Killifish Cure, Emma Goodwin, Daniel E. Zajic, Jason E. Podrabsky, Erin E. Shortlidge

Student Research Symposium

A national goal for education reform is to provide opportunities for all biology undergraduates to participate in research. Traditionally, undergraduates gain research experience by apprenticing in faculty-led research labs; however, only a fraction of undergraduates have access to these opportunities. Course-based Undergraduate Research Experiences (CUREs) are a type of laboratory course where students conduct experiments to answer relevant research questions, thus allowing undergraduates to gain authentic research experience at a large scale. To increase equity in opportunities for biology undergraduates to participate in authentic scientific research at Portland State University (PSU), we have designed and implemented a CURE to pilot …

Trophic Ecology And Parasitism Of A Mesopelagic Fish Assemblage, Matthew Woodstock

HCNSO Student Theses and Dissertations

Mesopelagic (open ocean, 200-1000 m depth) fishes are important consumers of zooplankton and are prey of oceanic predators. Some mesopelagic fishes (e.g., myctophids and stomiids) undertake a diel vertical migration where they ascend to the near-surface waters during the night to feed and descend into the depths during the day to avoid predators. Other mesopelagic fishes (e.g., Sternoptyx spp.) do not vertically migrate and remain at deep depths throughout the day. While in the epipelagic zone (surface – 200 m depth), vertically migrating fishes become prey to upper-trophic level predators, such as: tunas and billfishes. Benthic fishes (e.g., macrourids) often …

Identification And Spatiotemporal Dynamics Of Tuna (Family: Scombridae; Tribe: Thunnini) Early Life Stages In The Oceanic Gulf Of Mexico, Nina Pruzinsky

HCNSO Student Theses and Dissertations

Fishes within the family Scombridae (i.e. tunas, mackerels and bonitos) are of high ecological and economic value, as they are heavily targeted by commercial and recreational fisheries. In coastal and open-ocean environments, adults are high-level predators, while larvae and juveniles serve as prey for numerous species. Much is known about the distribution and abundance of adult tunas, but high taxonomic uncertainty and limited knowledge regarding the distributional patterns of larval and juvenile tunas have led to an “operational taxonomic unit” gap in our understanding of tuna ecology. Scombrids were collected across the Gulf of Mexico (GoM, hereafter) during seven research …

Preliminary Work On Infestation Dynamics And Stable Isotope Ecology Of A Coral Reef Micropredator, William Garrett Jenkins

Student Theses and Dissertations

Despite the significant ecological role that parasites likely play within their respective communities, little is understood about the role that they play within food webs. The studies presented herein sought to expand upon the understanding of the role that gnathiid isopods, a marine fish ectoparasite, play within coral reef ecological communities by: a) assessing the effect of host physical condition on susceptibility to exploitation by a gnathiid isopod and b) by conducting a comprehensive, preliminary, study on the stable isotope ecology of these micropredators. Host fish which were experimentally injured during field trials exhibited a higher probability of being parasitized …

Wetlands Evaluation For Philbrick's Pond Marsh Drainage Evaluation North Hampton, Nh, David M. Burdick, Chris Peter, Gregg Moore

Natural Resources & the Environment

Philbrick’s Pond is a lagoon type estuary that formed landward of barrier beach spits in North Hampton, NH. Its inlet was stabilized and restricted by the road that is now Route 1A or Ocean Boulevard. Water flow from the Gulf of Maine passes through a culvert running under Route 1A and into a small waterway and is further restricted as it runs through a clay pipe under an old trolley berm. The lagoon is characterized as a 29 acre tidal marsh. The goal of the overall project is to evaluate the condition and hydrology of the two restrictions recognizing the …

Ichthyology Scientific Collection Spreadsheet, Karisa Boyer

Ichthyology Collection

No abstract provided.

Light Availability And Phytoplankton Growth Beneath Arctic Sea Ice: Integrating Observations And Modeling, Victoria J. Hill, Bonnie Light, Michael Steele, Richard C. Zimmerman

OES Faculty Publications

Observations of the seasonal light field in the upper Arctic Ocean are critical to understanding the impacts of changing Arctic ice conditions on phytoplankton growth in the water column. Here we discuss data from a new sensor system, deployed in seasonal ice cover north‐east of Utqiaġvik, Alaska in March 2014. The system was designed to provide observations of light and phytoplankton biomass in the water column during the formation of surface melt ponds and the transition from ice to open water. Hourly observations of downwelling irradiance beneath the ice (at 2.9, 6.9, and 17.9 m depths) and phytoplankton biomass (at …