Marine Biology Commons^™

Supplemental Material For Reich 2016, Deborah Robertson, Hannah G. Reich, Gretchen Goodbody-Gringley

Faculty Works

No abstract provided.

Quantifying The Success Of Eastern Oyster Pilot Reefs In Brevard County, Florida, Lacie Anderson

Honors Undergraduate Theses

Crassostrea virginica, the eastern oyster, is a native keystone species that inhabits many coastal and estuarine ecosystems along the Atlantic seaboard. Introduction of the eastern oyster into estuarine areas with limited current populations is gaining popularity as a pro-active approach to improve estuarine water quality. In November 2014 and April 2015, a total of five pilot oyster reef treatments were deployed in Brevard County: bagged adult oysters (grown by community members under their docks through oyster gardening) collected in fall 2014 and spring 2015, bagged clean shell, oyster restoration mats, and empty plots (control). Locations of deployment included a …

A Pre-Human Baseline For Stressors Limiting Staghorn Growth: Evidence From Sub-Fossil Skeletons Preserved In Earthquake Scarps, Central Belize, Samantha L. Hargrove

Undergraduate Distinction Papers

Caribbean coral reefs have had an 80% decrease in live coral cover over the last several decades and the effect of white-band disease on Acropora species was a major contributor. The loss of Acropora resulted in a decrease of reef rugosity and habitats for fish and reef invertebrates. This paper examines the record of stressors today and in pre-human staghorn communities to examine possible changes. Acropora cervicornis fragments, estimated to be 250-750 years old, were collected from recently exposed earthquake scarps on patch reefs in the South Water Caye Marine Reserve, Central Belize. Skeletal records of stressors included damsel fish …

You Can't Catch A Fish With A Robot, R. Grant Gilmore Jr.

Gulf and Caribbean Research

Abstract

In this essay I will relate the challenges associated with deep sea ocean exploration as well as the advantages and disadvantages of today’s ocean technologies based on experience with most of these systems. After nearly five decades using robotic vehicles (Remotely Operated Vehicles = ROVs and Autonomous Underwater Vehicles = AUVs) and manned submarines for fish research, I thought it would be appropriate to briefly describe a career spent using these technologies as they were developed. Deep sea ichthyologists cannot effectively catch a swimming fish with a robot even 40 years after the development of the first ROV for …

Age, Growth And Natural Mortality Of Blackfin Snapper Lutjanus Buccanella From The Southeastern United States And U. S. Caribbean, Michael L. Burton, Jennifer C. Potts, Daniel R. Carr

Gulf and Caribbean Research

We determined ages of Blackfin Snapper (Lutjanus buccanella Cuvier 1828; n = 622) collected from the southeastern United States coast and U.S. Caribbean from 1979–2015 using sectioned sagittal otoliths. Opaque zones were determined to be annular, forming March – July (peaking in April–June). Blackfin Snapper ranged from 1–27 years and from 180–609 mm total length (TL). Body size relationships for Blackfin Snapper were: TL = 1.09 FL + 0.81 (n = 203, r2 = 0.99); FL = 0.91 TL + 3.38 (n = 203, r2 = 0.99); TL = 1.23 SL + 14.27 (n = 83, r2 = 0.97); FL …

Potential Benefits And Shortcomings Of Marine Protected Areas For Small Seabirds Revealed Using Miniature Tags, Sara M. Maxwell, Melinda G. Conners, Nicholas B. Sisson, Tiffany M. Dawson

Biological Sciences Faculty Publications

Marine protected areas are considered important tools for protecting marine biodiversity, and animal tracking is a key way to determine if boundaries are effectively placed for protection of key marine species, including seabirds. We tracked chick-rearing brown noddies (Anous stolidus) from the Dry Tortugas National Park in Florida USA in 2016 using 1.8 g Nanofix GPS tags (n = 10), making this the first time this species has ever been tracked. We determined movement parameters, such as flight speed, distance traveled and home range, and how birds used a complex of marine protected areas including the Dry Tortugas …

Sea Turtle Response To Climate Change: Analyzing Current And Predicting Future Impacts On Populations, Habitat, And Prey Populations, Eva J. Golden

Honors Theses and Capstones

With the prediction of devastating global climate change effects for the near future, scientists are expanding their research and understanding of some of the most severely affected organisms. Because sea turtles rely on both marine and terrestrial habitats for survival, and because coastal areas are already experiencing great losses due to sea level rising, human development, and pollution, all seven species are already listed as threatened under the Endangered Species Act. In this literature analysis, I examined the many factors that contribute to a sampling of the current sea turtle population status as well as scrutinized turtle adaptability to the …

River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2016, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Gerry Pinto, Nisse Goldberg, Radha Pyati, Peter Bacopoulos, Anthony Ouellette, Gretchen Bielmyer-Fraser, An-Phong Le, Ray Oldakowski

State of the River Report

No abstract provided.

Natural Cultch Type Influences Habitat Preference And Predation, But Not Survival, In Reef-Associated Species, Erica A. Levine, Stephen Gosnell J., Emily M. Goetz, Christopher R. Malinowski

Publications and Research

A shared origin with fresh and dredged cultch and availability via mining have made fossil cultch a commonly used reef restoration substrate. However, important differences in shape and size between whole-shell cultch and fossil cultch may impact the complexity of reefs constructed from these materials. To determine if these differences may impact the development of restored reefs, we quantified the interstitial space each cultch type provides and constructed reef mesocosms to measure (1) the immediate effects of exposure to each cultch type on mortality of blue crab (Callinectes sapidus) and pink shrimp (Farfantepenaeus duorarum); (2) the …

Identification Of Compounds Of Allelopathic Extracts From Two Species Of Metapeyssonnelia (Rhodophyta) Growing On The Hydrocoral, Millepora Complanata, In Puerto Rico, Maria I. Reyes-Contreras, Aniuska Kazandjian, David L. Ballantine

Gulf and Caribbean Research

Two Puerto Rican species of the encrusting red alga Metapeyssonnelia are known to overgrow and kill the hydrocoral Millepora complanata. The overgrowth is accompanied by bleaching or tissue lightening regions surrounding the growing margin of the algae on the coral tissue. Lipophilic and hydrophilic extracts from Metapeyssonnelia corallepida and M. milleporoides were obtained and analyzed by GC-MS. The following compounds were identified from M. corallepida: squalene and 5-(hydroxymethyl)-2-(dimethoxymethyl)-furan3-methoxycarbonyl-1,1-diethyl-2-buten-4-olide and from M. milleporoides: 2,4-dit-butyl phenol, 2(3H)-furanone and dihydro-4,4-dimethyl-(CAS), terpenes, furanones and phenol. Aliquots of crude extracts of both Metapeyssonnelia species applied to coral fragments resulted in visible changes …

Phytoplankton Pigment Specific Growth And Losses Due To Microzooplankton Grazing In A Northern Gulf Of Mexico Estuary During Winter/Fall, Amanda M. Mcgehee, Donald G. Redalje

Gulf and Caribbean Research

Microzooplankton dilution grazing experiments were carried out on 6 dates, over a 3 month period at 2 locations in the Bay of St. Louis, MS (BSL) to determine phytoplankton pigment specific growth rates under natural (µ₀) and replete (µ_n) nutrient conditions and microzooplankton grazing. We hypothesized that diatoms would be the largest portion of the phytoplankton composition due to the winter/fall season and that these organisms would have the highest growth/grazing rates. We suspected that river flow from the Jourdan River would adversely affect growth and grazing rates of all phytoplankton classes. Growth rates of 5 …

Endohelminth Parasites Of Some Midwater And Benthopelagic Stomiiform Fishes From The Northern Gulf Of Mexico, Michael J. Andres, Mark S. Peterson, Robin M. Overstreet

Gulf and Caribbean Research

: Mesopelagic fishes represent significant ecological links between mesozooplankton and the larger pelagic squids, fishes, and marine mammals. As such, these fishes also play a significant role as intermediate or paratenic hosts for parasites that require a crustacean intermediate host and mature in marine mammals or pelagic fishes. We examined a total of 208 individuals representing 5 species of Sternoptychidae and 88 individuals representing 2 species of Phosichthyidae from 20 locations in the northern Gulf of Mexico (nGOM). Six of the 7 species we examined are mesopelagic and one species was benthopelagic. We found the larval stages of Anisakis brevispiculata …

Isolation And Characterization Of Eight Polymorphic Microsatellites For The Spotted Spiny Lobster, Panulirus Guttatus, Nathan Truelove, Donald C. Behringer, Mark J. Butler Iv, Richard F. Preziosi

Biological Sciences Faculty Publications

Microsatellite sequences were isolated from enriched genomic libraries of the spotted spiny lobster, Panulirus guttatus using 454 pyrosequencing. Twenty-nine previously developed polymerase chain reaction primer pairs of Panulirus argus microsatellite loci were also tested for cross-species amplification in Panulirus guttatus. In total, eight consistently amplifying, and polymorphic loci were characterized for 57 individuals collected in the Florida Keys and Bermuda. The number of alleles per locus ranged from 8 to 20 and observed heterozygosities ranged from 0.409 to 0.958. Significant deviations from Hardy–Weinberg equilibrium were found in one locus from Florida and three loci from Bermuda. Quality control testing indicated …

Diseases And Parasites Of Scallops, Rodman G. Getchell, Roxanna Smolowitz, Sharon E. Mcgladdery, Susan M. Bower

Arts & Sciences Faculty Publications

Knowledge of the diseases and parasites of scallops has continued to change since the second edition of this book (McGladdery et al., 2006). Advancements in the field of scallop health research have followed the broader improvements in the ability to identify disease agents in other aquatic animals. Significant progress has been made in diagnostic capability, particularly the ability to distinguish between infectious pathogens and cryptic histopathological lesions in scallops using molecular techniques. Evidence of this is the progress made in combating opportunistic infections of larvae and juveniles of several scallop species reared under hatchery conditions. There are an increasing number …

Conservation Triage: Debating Which Species To Save And Why, Loren B. Byrne

Arts & Sciences Faculty Publications

Because of human impacts on the biosphere, so many species are now threatened with extinction that it may not be possible to save them all. Akin to triage in a medical emergency situation, this challenge has brought forth the idea of conservation triage: having to make difficult choices and justifications about which species should be saved and which might not be savable. The goal of the learning activity described in this chapter is to engage students in this debate so they can gain insights into real-world conservation challenges and practice critical thinking and decision making skills in an authentic context. …

Comparative Anatomy Of The Bony Labyrinth Of Extant And Extinct Porpoises (Cetacea: Phocoenidae), Rachel A. Racicot, William Gearty, Naoki Kohno, John J. Flynn

School of Biological Sciences: Faculty Publications

The inner ear anatomy of cetaceans, now more readily accessible by means of nondestructive high-resolution X-ray computed tomographic (CT) scanning, provides a window into their acoustic abilities and ecological preferences. Inner ear labyrinths also may be a source for additional morphological characters for phylogenetic analyses. In this study, we explore digital endocasts of the inner ear labyrinths of representative species of extinct and extant porpoises (Mammalia: Cetacea: Phocoenidae), a clade of some of the smallest odontocete cetaceans, which produce some of the highest-frequency clicks for biosonar and communication. Metrics used to infer hearing ranges based on cochlear morphology indicate that …

Beyond Just Sea-Level Rise: Considering Macroclimatic Drivers Within Coastal Wetland Vulnerability Assessments To Climate Change, Michael J. Osland, Nicholas M. Enwright, Richard H. Day, Christopher A. Gabler, Camille L. Stagg, James B. Grace

School of Earth, Environmental, & Marine Sciences Faculty Publications

Due to their position at the land-sea interface, coastal wetlands are vulnerable to many aspects of climate change. However, climate change vulnerability assessments for coastal wetlands generally focus solely on sea-level rise without considering the effects of other facets of climate change. Across the globe and in all ecosystems, macroclimatic drivers (e.g., temperature and rainfall regimes) greatly influence ecosystem structure and function. Macroclimatic drivers have been the focus of climate change-related threat evaluations for terrestrial ecosystems, but largely ignored for coastal wetlands. In some coastal wetlands, changing macroclimatic conditions are expected to result in foundation plant species replacement, which would …

Responses To Familiar And Unfamiliar Humans By Belugas (Delphinapterus Leucas), Bottlenose Dolphins (Tursiops Truncatus), & Pacific White-Sided Dolphins (Lagenorhynchus Obliquidens): A Replication And Extension, Heather M. Hill, Deirdre Yeater, Sarah Gallup, Sara Guarino, Steve Lacy, Tricia Dees, Stan A. Kuczaj Ii

Psychology Faculty Publications

Previous research has documented that cetaceans can discriminate between humans, but the process used to categorize humans still remains unclear. The goal of the present study was to replicate and extend previous work on the discrimination between familiar and unfamiliar humans by three species of cetaceans. The current study manipulated the familiarity and activity level of humans presented to 12 belugas (Delphinapterus leucas) housed between two facilities, five bottlenose dolphins (Tursiops truncatus), and six Pacific white-sided dolphins (Lagenorhynchus obliquidens) during free-swim conditions. Two measures of discrimination were coded from video recordings of each trial: …

Measuring Beach Profiles Along A Low-Wave Energy Microtidal Coast, West-Central Florida, Usa, Jun Cheng, Ping Wang, Qiandong Guo

School of Geosciences Faculty and Staff Publications

Monitoring storm-induced dramatic beach morphology changes and long-term beach evolution provides crucial data for coastal management. Beach-profile measurement using total station has been conducted along the coast of west-central Florida over the last decade. This paper reviews several case studies of beach morphology changes based on total-station survey along this coast. The advantage of flexible and low-cost total-station surveys is discussed in comparison to LIDAR (light detection and ranging) method. In an attempt to introduce total-station survey from a practical prospective, measurement of cross-shore beach profile in various scenarios are discussed, including: (1) establishing a beach profile line with known …

Spatial Biodiversity Patterns Of Fish Within The Aransas Bay Complex, Texas, Bridgette F. Froeschke, Megan M. Reese Robillard, Gregory W. Stunz

Gulf and Caribbean Research

The goal of this study was to consider the effects of habitat type and environmental conditions on the biodiversity of fishes within the Aransas Bay Complex, Texas and provide a management framework and an ecosystem examination of Essential Fish Habitat (EFH). A stratified, randomized experimental design was used to collect fishes from seagrass, oyster, and non-vegetated habitats within the Aransas Bay Complex from February through May 2010 over large spatial scales at the “bay-complex” level. We developed a biodiversity habitat model using Boosted Regression Trees (BRT). Fitted functions from the “best” fit BRT habitat model indicated that fish biodiversity was …

Parasites From The Red Lionfish, Pterois Volitans From The Gulf Of Mexico, Alexander Q. Fogg, Carlos F. Ruiz, Stephen S. Curran, Stephen A. Bullard

Gulf and Caribbean Research

No abstract provided.

A Missing Link In The Ionoregulatory Strategy Of Larval Sea Lamprey (Petromyzon Marinus) And African Lungfish (Protopterus Annectens): A Closer Look Into The Role Of The Non-Gastric H+/K+-Atpase, Justine E. Doherty

Theses and Dissertations (Comprehensive)

Fishes living in freshwater need to actively compensate for the diffusive loss of ions and osmotic gain of water. The gill is the primary organ of ion regulation and contains an array of ion transport proteins to help maintain homeostasis. Two of the more well studied ion pumps are the Na⁺/K⁺-ATPase (NKA) and vacuolar type proton ATPase (V-ATPase). This thesis focuses on another ion pump known as the non-gastric H⁺/K⁺-ATPase (ngHKA). The ngHKA (gene: atp12a) has not been found in any of the teleost fishes, indicating loss from that lineage. In …

Tests Of Reproductive Isolation Between The Fishes Fundulus Heteroclitus And F. Grandis, Ruthie E. Barbas

UNF Graduate Theses and Dissertations

The closely related killifishes Fundulus heteroclitus and F. grandis hybridize in a small region where their ranges overlap in coastal northeastern Florida. Hybrids of these species are rare in frequency within the contact zone, suggesting the presence of relatively strong reproductive isolation between these species. The objective of this study was to elucidate barriers to reproduction between F. heteroclitus and F. grandis in the lab, as well as to quantify the relative strengths and contributions of various isolating barriers. Pre-zygotic (mating and fertilization) and post-zygotic (hatching) barriers were investigated by performing a variety of choice and no-choice laboratory mating experiments. …

What Would The Babel Fish Say?, Monica Gagliano

Animal Sentience

Starting with its title, Key’s (2016) target article advocates the view that fish do not feel pain. The author describes the neuroanatomical, physiological and behavioural conditions involved in the experience of pain in humans and rodents and confidently applies analogical arguments as though they were established facts in support of the negative conclusion about the inability of fish to feel pain. The logical reasoning, unfortunately, becomes somewhat incoherent, with the arbitrary application of the designated human criteria for an analogical argument to one animal species (e.g., rodents) but not another (fish). Research findings are reported selectively, and questionable interpretations are …

Biodegradation Of Highly Weathered Deepwater Horizon Oil, Joel T. Bostic

Theses and Dissertations

Oil from the Deepwater Horizon (DwH) spill continues to be found on beaches five years post-spill. Understanding the role of microbes in removing DwH oil from sandy beaches is necessary to elucidate the fate of DwH oil in the coastal zone. Oiled sand patties and non-oiled sand were collected from affected beaches five years post- DwH. Biomarkers in oiled sand indicated that sand patties originated from the DwH spill, however the oil was heavily weathered and dominated by oxygenated hydrocarbons. Microbial communities, as measured by phospholipid fatty acids (PLFA), were present on oiled sand patties and distinct from microbes on …

Evaluating Climatic Response To External Radiative Forcing During The Late Miocene To Early Pliocene: New Perspectives From Eastern Equatorial Pacific (Iodp U1338) And North Atlantic (Odp 982) Locations, Anna J. Drury, Cédric M. John, Amelia E. Shevenell

Marine Science Faculty Publications

Orbital‐scale climate variability during the latest Miocene‐early Pliocene is poorly understood due to a lack of high‐resolution records spanning 8.0–3.5 Ma, which resolve all orbital cycles. Assessing this variability improves understanding of how Earth's system sensitivity to insolation evolves and provides insight into the factors driving the Messinian Salinity Crisis (MSC) and the Late Miocene Carbon Isotope Shift (LMCIS). New high‐resolution benthic foraminiferal Cibicidoides mundulus δ¹⁸O and δ¹³C records from equatorial Pacific International Ocean Drilling Program Site U1338 are correlated to North Atlantic Ocean Drilling Program Site 982 to obtain a global perspective. Four long‐term benthic …

Resurgence Of Acropora Corals On Mid Shelf Patch Reefs, Southwater Caye Marine Reserve, Central Belize, Jillian J. Keefer

Undergraduate Honors Thesis Projects

Acropora cervicornis (staghorn) and Acropora palmata (elkhorn) are ecologically important corals that grow quickly and provide topography and refuges for fish and invertebrates. Historically, Acropora was the most abundant coral in shallow patch reef zones in the Caribbean. During the 1980s, white band disease eliminated most Acropora causing a loss in rugosity and an increase of macroalgae on many reefs. Although Acropora remains rare throughout most of the Caribbean, this study documents its partial comeback and possible limiting factors in Southwater Caye Marine Reserve (SWCMR), Central Belize. Patch reefs in the reserve averaged 19% live coral cover with A. palmata …

Should We Sync? Seascape-Level Genetic And Ecological Factors Determine Seagrass Flowering Patterns, Marlene Jahnke, Jordi F. Pagès, Teresa Alcoverro, Paul S. Lavery, Kathryn M. Mcmahon, Gabriele Procaccini

Research Datasets

Spatial and temporal heterogeneity in flowering occur in many plant species with abiotic pollination and may confer fitness advantages through mechanisms such as predator satiation or pollination efficiency. Environmental factors such as light quality or quantity and temperature play an important role in inducing synchronisation on wide geographic scales. On a smaller geographic scale, external factors such as resource availability and herbivory are theorised to trigger flowering, while genetic factors may also play an important role. In this study, we assessed the importance of ecological and genetic factors in shaping seascape-level spatial heterogeneity in flowering of the seagrass Posidonia oceanica. …

Isolation And Identification Of Bacterial Endosymbionts In The Brooding Brittle Star Amphipholis Squamata, Abbey Rose Tedford

Honors Theses and Capstones

Symbiotic associations with subcuticular bacteria (SCB) have been identified and studied in numerous echinoderms, including the SCB of the brooding brittle star, Amphipholis squamata. These SCB, however, have not been studied using current next generation sequencing technologies. Previous studies on the SCB of A. squamata placed these bacteria in the genus Vibrio (γ-Proteobacteria), but subsequent studies suggested that the SCB are primarily composed of α-Proteobacteria. The present study examines the taxonomic composition of SCB associated with A. squamata from the Northwest Atlantic. DNA was extracted using a CTAB protocol and 16S rRNA sequences were amplified …

Attached Algae As An Indicator Of Water Quality: A Study Of The Viability Of Genomic Taxonomic Methods, Allison R. Wood

Honors Theses and Capstones

This research involved evaluating algae as an indicator of water quality in New Hampshire's rivers, with a focus on the Great Bay Estuary. The project had three main goals. First, determining whether or not algae would work as an indicator of water quality in the great bay ecosystem, an environment where tidal currents are strong and water composition is mixed. The second goal was to compare traditional microscopic methods of taxonomy with emerging genomic methods, increasing the economic viability of attached algae monitoring. The third project goal, still underway, is to evaluate massive amounts of genomic data from the Great …