Marine Biology Commons^™

Chemical Warfare In Narragansett Bay: Determining The Allelopathic Effects Of Ulva, Fiona P. Mackechnie, Lindsay A. Green, Carol S. Thornber

Senior Honors Projects

Several species of Ulva are commonly found in the waters of Narragansett Bay, especially in eutrophic waters, where they can form fast growing blooms that can have ecological and economic consequences. The formation and release of allelopathic chemicals has been previously documented in some species of Ulva, including Ulva lactuca. Three species of blade-forming Ulva are commonly found in Narragansett Bay and coastal Rhode Island, namely, U. compressa, U. lactuca, and U. rigida. We aimed to determine if these three species of Ulva had allelopathic effects by testing their impacts on the growth of other macroalgae. Cystoclonium purpureum …

Distribution And Identification Of Fish Eggs In An Internal Wave Transport Mechanism, Claire Kuelbs

Undergraduate Honors Theses

Internal waves have been proven to transport invertebrate larvae onshore, but there has been little indication on whether internal waves transport fish eggs. Fish eggs are typically buoyant and are often found in neustonic samples, and internal waves often cause fronts that transport oils and other light particles. This research aims to determine whether there are patterns to the distribution of fish eggs. One possibility is that offshore fish eggs can be transported onshore, to nearshore nursery habitats. Before 2003, when genetic barcoding was proposed as an identification mechanism, fish eggs could only be identified visually, using color, size, and …

The Pelagic Artisanal Fishing Of Mangapwani, Northern Unguja, Shavonne Stanek

Independent Study Project (ISP) Collection

A total of 99 interviews were conducted. Over a period of 28 days from April 5- May 2, 2015, a total of 75 interviews were conducted with 72 fishermen, 2 drying processors and 1 Bwana Diko. During a 5 day preliminary period from March 12-16, 2015, a total of 24 interviews were conducted with 7 fishermen and 14 drying processors. The interviews focused on their work in the local fishing industry, the amount of fish caught and dried, and their opinions on the sustainability of their industry. The interviews were conducted using a translator who relayed the responses in English …

Fauna Census Of Intertidal Cliffs, Mangapwani, Zanzibar, Emily Jankowski

Independent Study Project (ISP) Collection

Due to their extreme variations in condition over the course of a day, intertidal zones are challenging environments. Organisms that live there must be prepared to cope with both exposure and submersion, not to mention the temperature variations that accompany these conditions. The differing tolerances and adaptations of various organisms to these conditions generally cause patterns of vertical zonation to occur in the intertidal zone, especially when the shore is steep and rocky. Understanding the ecology of shore environments is important to future conservation and management efforts. This study was conducted on a beach in Mangapwani, Zanzibar at at 6˚ …

Seagrass Deterrence To Mesograzer Herbivory: Evidence From Mesocosm Experiments And Feeding Preference Trials, Latina Steele, John F. Valentine

Biology Faculty Publications

Two laboratory experiments documented the effects of mesograzers (i.e. the gastropod Crepidula ustulatulina and the isopod Paracerceis caudata) on phenolic acid and condensed tannin production in 2 regionally abundant seagrasses—Thalassia testudinum (turtlegrass) and Halodule wrightii (shoalgrass). Subsequent paired choice experiments tested the hypothesis that phenolic acids and condensed tannins produced by these seagrasses deter mesograzer feeding. At the scale of the shoot, grazing by gastropods and isopods led to ~40 to 50% decreases in concentrations of some phenolic acids and ~20% decreases in condensed tannins in turtlegrass leaves. At a more refined spatial scale, concentrations of 2 of these compounds …

Ocean Food Systems, Barry A. Costa-Pierce

Marine Sciences Faculty Presentations

Presentation given during session on Food Justice, where Barton Seaver, Director of the Healthy and Sustainable Food Program in the T.H. Chan School of Public Health at Harvard, described a great nutrition and health crisis in America perpetuated by groups demarketing seafood and promoting meat in the American diet. Seaver noted that Americans consume about 167 lbs. of meat a year and only 14 lbs. of seafood, leading to connected public health and environmental crises, heart disease, and obesity.

According to presenter Barry Costa-Pierce:

Seafood systems in the USA are our most insane foods; America imports nearly every seafood we …

The Status Of Fishes In The Missouri River, Nebraska: Blue Sucker Cycleptus Elongatus, Kirk D. Steffensen, Sam Stukel, Dane A. Shuman

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Blue Sucker Cycleptus elongatus are a large-bodied, benthic fish that are considered an indicator species for riverine health. A combination of historic commercial fishing and anthropogenic modifications to riverine habitat led to blue suckers being listed as a candidate species for the federal threatened or endangered species list in 1993. However, they were never designated a federally protected species. Locally, Blue Suckers are currently listed as a Nebraska Natural Legacy Project’s Tier 1 species but population changes and trends have not been quantified. Therefore, the objective of this paper was to evaluate the current population status of Blue Sucker in …

A Decline In Benthic Foraminifera Following The Deepwater Horizon Event In The Northeastern Gulf Of Mexico, Patrick Schwing, Isabel Romero, Gregg R. Brooks, David Hastings, Rebekka A. Larson, David Hollander

C-IMAGE Publications

Sediment cores were collected from three sites (1000–1200 m water depth) in the northeastern Gulf of Mexico from December 2010 to June 2011 to assess changes in benthic foraminiferal density related to the Deepwater Horizon (DWH) event (April-July 2010, 1500 m water depth). Short-lived radioisotope geochronologies (²¹⁰Pb, ²³⁴Th), organic geochemical assessments, and redox metal concentrations were determined to relate changes in sediment accumulation rate, contamination, and redox conditions with benthic foraminiferal density. Cores collected in December 2010 indicated a decline in density (80–93%). This decline was characterized by a decrease in benthic foraminiferal density and benthic foraminiferal …

Changes In Spatial Patterns Of Caragana Stenophylla Along A Climatic Drought Gradient On The Inner Mongolian Plateau, Li-Na Xie, Hong-Yu Guo, Christopher A. Gabler, Qing-Fang Li, Cheng-Cang Ma

School of Earth, Environmental, & Marine Sciences Faculty Publications

Few studies have investigated the influence of water availability on plant population spatial patterns. We studied changes in the spatial patterns of Caragana stenophylla along a climatic drought gradient within the Inner Mongolian Plateau, China. We examined spatial patterns, seed density, “nurse effects” of shrubs on seedlings, transpiration rates and water use efficiency (WUE) of C. stenophylla across semi-arid, arid, and intensively arid zones. Our results showed that patches of C. stenophylla populations shifted from a random to a clumped spatial pattern towards drier environments. Seed density and seedling survival rate of C. stenophylla decreased from the semi-arid zone to …

Growth Of A Deep-Water, Predatory Fish Is Influenced By The Productivity Of A Boundary Current System, Hoang Minh Nguyen, Adam N. Rountrey, Jessica J. Meeuwig, Peter G. Coulson, Ming Feng, Stephen J. Newman, Anya M. Waite, Corey B. Wakefield, Mark G. Meekan

Fisheries Research Articles

The effects of climate change on predatory fishes in deep shelf areas are difficult to predict because complex processes may govern food availability and temperature at depth. We characterised the net impact of recent environmental changes on hapuku (Polyprion oxygeneios), an apex predator found in continental slope habitats (>200 m depth) by using dendrochronology techniques to develop a multi-decadal record of growth from otoliths. Fish were sampled off temperate south-western Australia, a region strongly influenced by the Leeuwin Current, a poleward-flowing, eastern boundary current. The common variance among individual growth records was relatively low (3.4%), but the …

Dynamics Of Marine Bacterial Community Diversity Of The Coastal Waters Of The Reefs, Inlets, And Wastewater Outfalls Of Southeast Florida, Alexandra Mandina Campbell, Jay Fleisher, Christopher D. Sinigalliano, James R. White, Jose V. Lopez

Marine & Environmental Sciences Faculty Articles

Coastal waters adjacent to populated southeast Florida possess different habitats (reefs, oceanic inlets, sewage outfalls) that may affect the composition of their inherent microbiomes. To determine variation according to site, season, and depth, over the course of 1 year, we characterized the bacterioplankton communities within 38 nearshore seawater samples derived from the Florida Area Coastal Environment (FACE) water quality survey. Six distinct coastal locales were profiled – the Port Everglades and Hillsboro Inlets, Hollywood and Broward wastewater outfalls, and associated reef sites using culture-independent, high-throughput pyrosequencing of the 16S rRNA V4 region. More than 227,000 sequences helped describe longitudinal taxonomic …

Memorandum: Quality Assurance Of 2013 Great Bay Estuary Eelgrass Mapping Conducted By Fred Short, Matthew A. Wood

Quality Assurance Project Plans

The purpose of this memorandum is to document the results of quality assurance checks on the 2013 Great Bay Estuary Eelgrass Mapping conducted by Fred Short.

Ocean Currents Generate Large Footprints In Marine Palaeoclimate Proxies, Erik Van Sebille, Paolo Scussolini, Jonathan V. Durgadoo, Frank J. C. Peeters, Arne Biastoch, Wilbert Weijer, Chris Turney, Claire B. Paris, Rainer Zahn

C-IMAGE Publications

Fossils of marine microorganisms such as planktic foraminifera are among the cornerstones of palaeoclimatological studies. It is often assumed that the proxies derived from their shells represent ocean conditions above the location where they were deposited. Planktic foraminifera, however, are carried by ocean currents and, depending on the life traits of the species, potentially incorporate distant ocean conditions. Here we use high-resolution ocean models to assess the footprint of planktic foraminifera and validate our method with proxy analyses from two locations. Results show that foraminifera, and thus recorded palaeoclimatic conditions, may originate from areas up to several thousands of kilometres …

Shifts In Attack Behavior Of An Important Kelp Forest Predator Within Marine Reserves, J. S. Berriman, M. C. Kay, D. C. Reed, A. Rassweiler, D. A. Goldstein, William G. Wright

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Marine reserves have become increasingly valuable tools with which to manage ecosystems. These reserves consistently restore populations of top predators, often reducing availability of their favored prey. We hypothesized that such prey reduction in reserves causes protected predators to alter their attack behavior to include less palatable prey, potentially amplifying top-down effects on community structure. To test this hypothesis, we presented the relatively unpalatable sea hare Aplysia californica to freely foraging spiny lobsters Panulirus interruptus in 4 marine no-take reserves, each paired with an adjacent fished area. We found that lobsters only attacked sea hares inside reserves, where lobster density …

Textures And Traction: How Tube-Dwelling Polychaetes Get A Leg Up, Rachel Merz

Biology Faculty Works

By controlling the traction between its body and the tube wall, a tube-dwelling polychaete can move efficiently from one end of its tube to the other, brace its body during normal functions (e.g., ventilation and feeding), and anchor within its tube avoiding removal by predators. To examine the potential physical interaction between worms and the tubes they live in, scanning electron microscopy was used to reveal and quantify the morphology of worm bodies and the tubes they produce for species representing 13 families of tube-dwelling polychaetes. In the tubes of most species there were macroscopic or nearly macroscopic (~10 μm–1 …

Dihydrolipoic Acid Conjugated Carbon Dots Accelerate Human Insulin Fibrillation, Sheba J. Kuruvilla, Shanghao Li, Lorenzo Sansalone, Blake Fortes, Ian Zheng, Patricia Blackwelder, Cyrus Pumilia, Miodrag Micic, Jhony Orbulescu, Roger M. Leblanc

Marine & Environmental Sciences Faculty Articles

Protein fibrillation is believed to play an important role in the pathology and development of several human diseases, such as Alzheimer’s disease, Parkinson’s disease and type 2 diabetes. Carbon dots (CDs), as a new type of nanoparticle have recently been extensively studied for potential biological applications, but their effects on protein fibrillation remain unexplored. In reality, any application in biological systems will inevitably have “contact” between proteins and CDs. In this study, human insulin was selected as a model protein to study the effects of CDs on protein fibrillation, as proteins may share a common mechanism to form fibrils. Hydrophobic …

Migration Strategies Vary In Space, Time, And Among Species In The Smallfish Metacommunity Of The Everglades, J. Matthew Hoch, Eric R. Sokol, Aaron D. Parker, Joel C. Trexler

Marine & Environmental Sciences Faculty Articles

Spatial ecology and movement strategies of aquatic organisms may limit their response to human-caused drying of wetland habitats. We characterized the movement strategies of the most abundant species of fish in the wetlands of the Everglades (USA) to better understand how they cope with annual fluctuations in aquatic habitat size. Over a six-year period, we used a sampling method designed to measure the density, activity levels, and movement direction of small fishes. We estimated changes in displacement speed and directional bias to identify patterns of movement that different fishes use to disperse over the gradient of disturbance in this environment. …

3d Dynamics Of Freshwater Lenses In The Near-Surface Layer Of The Tropical Ocean, Alexander Soloviev, Cayla Whitney Dean, Atsushi Fujimura

Marine & Environmental Sciences Faculty Articles

Convective rains in the Intertropical Convergence Zone produce lenses of freshened water on the ocean surface. Due to significant density differences between the freshened and saltier seawater, strong pressure gradients develop, resulting in lateral spreading of freshwater lenses in the form of gravity currents. Gravity currents inherently involve three-dimensional dynamics. As a type of organized structure, gravity currents may also interact with, and be shaped by, the ambient oceanic and atmospheric environment. Among the important environmental factors are background stratification and wind stress. Under certain conditions, a resonant interaction between a propagating freshwater lens and internal waves in the underlying …

A Catch Per Unit Effort (Cpue) Spatial Metric With Respect To The Western North Atlantic Pelagic Longline Fishery, Max Appelman

HCNSO Student Theses and Dissertations

Catch per unit effort (CPUE) is a quantitative method used to describe fisheries worldwide. CPUE can be presented as number of fish per 1000 hooks, number of fish per amount of fishing time, or with any unit of effort that best describes the fishery (e.g., search time, hooks per hour, number of trawls). CPUE is commonly used as an index to estimate relative abundance for a population. These indices are then applied within stock assessments so that fisheries managers can make justified decisions for how to manage a particular stock or fishery using options such as quotas, catch …

A Decline In Benthic Foraminifera Following The Deepwater Horizon Event In The Northeastern Gulf Of Mexico, Patrick Schwing, Isabel C. Romero, Gregg R Brooks, David W Hastings, Rebekka A Larson, David Hollander

Marine Science Faculty Publications

Sediment cores were collected from three sites (1000-1200 m water depth) in the northeastern Gulf of Mexico from December 2010 to June 2011 to assess changes in benthic foraminiferal density related to the Deepwater Horizon (DWH) event (April-July 2010, 1500 m water depth). Short-lived radioisotope geochronologies (²¹⁰Pb, ²³⁴Th), organic geochemical assessments, and redox metal concentrations were determined to relate changes in sediment accumulation rate, contamination, and redox conditions with benthic foraminiferal density. Cores collected in December 2010 indicated a decline in density (80-93%). This decline was characterized by a decrease in benthic foraminiferal density and benthic foraminiferal accumulation rate (BFAR) …

Identification Of Saccharina Groenlandica (Phaeophyceae) Around The Svalbard Archipelago: Dna Barcoding Using Cytochrome C Oxidase Subunit 1 (Coi), Anniken Lydon

Master's Theses

In the Arctic, brown algae (kelps) and seaweeds are ecologically important: providing habitat, protection, and nutrients for invertebrate and vertebrate species living in nearshore environments. Migrations of biota between the North Pacific and North Atlantic Oceans have occurred periodically during Earth’s history leading to colonization of the Arctic Ocean. Around 3.5 Mya the “Great Trans-Arctic Biotic Interchange” occurred and the Laminariales order of kelp, thought to be of North Pacific origin, underwent a massive radiation and speciation event around the Arctic Ocean. Phylogenetic analysis performed on “Laminaria-like” specimens collected from six sampling locations around the Svalbard Archipelago identified …

Microbial Iron Mats At The Mid-Atlantic Ridge And Evidence That Zetaproteobacteria May Be Restricted To Iron-Oxidizing Marine Systems, Jarrod J. Scott, John A. Breier, George W. Luther Iii, David Emerson

School of Earth, Environmental, & Marine Sciences Faculty Publications

Chemolithoautotrophic iron-oxidizing bacteria play an essential role in the global iron cycle. Thus far, the majority of marine iron-oxidizing bacteria have been identified as Zetaproteobacteria, a novel class within the phylum Proteobacteria. Marine iron-oxidizing microbial communities have been found associated with volcanically active seamounts, crustal spreading centers, and coastal waters. However, little is known about the presence and diversity of iron-oxidizing communities at hydrothermal systems along the slow crustal spreading center of the Mid-Atlantic Ridge. From October to November 2012, samples were collected from rust-colored mats at three well-known hydrothermal vent systems on the Mid-Atlantic Ridge (Rainbow, Trans-Atlantic Geotraverse, and …

Rapid Imbibition Of Water In Fractures Within Unsaturated Sedimentary Rock, Chu-Lin Cheng, E. Perfect, B. Donnelly, H. Z. Bilheux, A. S. Tremsin, L. D. Mckay, V. H. Distefano, J. C. Cai, L. J. Santodonato

School of Earth, Environmental, & Marine Sciences Faculty Publications

The spontaneous imbibition of water and other liquids into gas-filled fractures in variably-saturated porous media is important in a variety of engineering and geological contexts. However, surprisingly few studies have investigated this phenomenon. We present a theoretical framework for predicting the 1-dimensional movement of water into air-filled fractures within a porous medium based on early-time capillary dynamics and spreading over the rough surfaces of fracture faces. The theory permits estimation of sorptivity values for the matrix and fracture zone, as well as a dispersion parameter which quantifies the extent of spreading of the wetting front. Quantitative data on spontaneous imbibition …

Computer Modeling The Incursion Patterns Of Marine Invasive Species, Matthew W. Johnston

HCNSO Student Theses and Dissertations

Abstract Not Available.

Regional Patterns In The Otolith Chemistry Of Juvenile Spotted Seatrout (Cynoscion Nebulosus) Differ Under Contrasting Hydrological Regimes, Chet F. Rakocinski, Bruce H. Comyns, Mark S. Peterson, Alan M. Shiller

Faculty Publications

The value of using otolith chemistry to characterize recruitment in terms of natal source regions depends on how consistently spatio-temporal variation can be resolved. The objective of this study was to compare regional classification patterns in the otolith chemistry of juvenile Spotted Seatrout (Cynoscion nebulosus) between two years experiencing disparate hydrological regimes, and separated by a five year interlude. Spatial patterns in the whole-otolith chemistry of juveniles of this estuarine-dependent species were compared between years using five otolith elements and two stable isotopes. Consistent size-related trends in uptake and deposition were evidenced by parallel ontogenetic relationships for six otolith variables. …

Biogeochemical Analysis Of Ancient Pacific Cod Bone Suggests Hg Bioaccumulation Was Linked To Paleo Sea Level Rise And Climate Change, Maribeth S. Murray, C. Peter Mcroy, L. K. Duffy, Amy Hirons, J. M. Schaaf, Robert P. Trocine, John Trefry

Marine & Environmental Sciences Faculty Articles

Deglaciation at the end of the Pleistocene initiated major changes in ocean circulation and distribution. Within a brief geological time, large areas of land were inundated by sea-level rise and today global sea level is 120 m above its minimum stand during the last glacial maximum. This was the era of modern sea shelf formation; climate change caused coastal plain flooding and created broad continental shelves with innumerable consequences to marine and terrestrial ecosystems and human populations. In Alaska, the Bering Sea nearly doubled in size and stretches of coastline to the south were flooded, with regional variability in the …

Water Column Productivity And Temperature Predict Coral Reef Regeneration Across The Indo-Pacific, Bernhard Riegl, Peter W. Glynn, Evie A. Wieters, Samuel J. Purkis, C. D'Angelo, Joerg Wiedenmann

Marine & Environmental Sciences Faculty Articles

Predicted increases in seawater temperatures accelerate coral reef decline due to mortality by heat-driven coral bleaching. Alteration of the natural nutrient environment of reef corals reduces tolerance of corals to heat and light stress and thus will exacerbate impacts of global warming on reefs. Still, many reefs demonstrate remarkable regeneration from past stress events. This paper investigates the effects of sea surface temperature (SST) and water column productivity on recovery of coral reefs. In 71 Indo-Pacific sites, coral cover changes over the past 1-3 decades correlated negative-exponentially with mean SST, chlorophyll a, and SST rise. At six monitoring sites …

Seasonal And Interannual Oxygen Variability On The Washington And Oregon Continental Shelves, S. Siedlecki, N. Banas, K. Davis, S. Giddings, B. Hickey, P. Maccready, Thomas Connolly, S. Geier

Faculty Publications

The coastal waters of the northern portion of the California Current System experience a seasonal decline in oxygen concentrations and hypoxia over the summer upwelling season that results in negative impacts on habitat for many organisms. Using a regional model extending from 43°N to 50°N, with an oxygen component developed in this study, drivers of seasonal and regional oxygen variability are identified. The model includes two pools of detritus, which was an essential addition in order to achieve good agreement with the observations. The model was validated using an extensive array of hydrographic and moored observations. The model captures the …

Long-Term Impacts Of Disturbance On Nitrogen-Cycling Bacteria In A New England Salt Marsh, Anne E. Bernhard, Courtney Dwyer, Adrian Idrizi, Geoffrey Bender, Rachel Zwick

Biology Faculty Publications

Recent studies on the impacts of disturbance on microbial communities indicate communities show differential responses to disturbance, yet our understanding of how different microbial communities may respond to and recover from disturbance is still rudimentary. We investigated impacts of tidal restriction followed by tidal restoration on abundance and diversity of denitrifying bacteria, ammonia-oxidizing bacteria (AOB), and ammonia-oxidizing archaea (AOA) in New England salt marshes by analyzing nirS and bacterial and archaeal amoA genes, respectively. TRFLP analysis of nirS and betaproteobacterial amoA genes revealed significant differences between restored and undisturbed marshes, with the greatest differences detected in …

Fdou Project 26a Part 5 Task 1 - Our Florida Reefs (Ofr) Survey Outreach Efforts, Brian K. Walker, Amanda Rose Costaregni

Marine & Environmental Sciences Faculty Reports

This report contains summaries of the OFR survey outreach activities completed in Miami-

Dade, Broward, Palm Beach, and Martin counties between October 1st, 2014 and February

2nd, 2015.

A total of seven presentations were given in Broward, Palm Beach, and Martin Counties.

These presentations were for groups such as dive clubs, underwater photography clubs, fishing clubs, and environmental professionals clubs. Unfortunately, due to scheduling conflicts no survey presentations have been given in Miami-Dade County to-date. Summaries of these outreach presentations include the name of the club, location of the presentation, number of people reached, demographics, questions and responses during the …