Marine Biology Commons^™

State Of The River Report For The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, And Contaminants 2014, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Lucy Sonnenberg, Gerry Pinto, Nisse Goldberg, Kimberly Mann, Radha Pyati, Gretchen Bielmyer-Fraser, Stuart Chalk, Peter Bacopoulos, Brian P. Zoellner

State of the River Report

No abstract provided.

Emergence Of Algal Blooms: The Effects Of Short-Term Variability In Water Quality On Phytoplankton Abundance, Diversity, And Community Composition In A Tidal Estuary, Todd A. Egerton, Ryan E. Morse, Harold G. Marshall, Margaret R. Mulholland

OES Faculty Publications

Algal blooms are dynamic phenomena, often attributed to environmental parameters that vary on short timescales (e.g., hours to days). Phytoplankton monitoring programs are largely designed to examine long-term trends and interannual variability. In order to better understand and evaluate the relationships between water quality variables and the genesis of algal blooms, daily samples were collected over a 34 day period in the eutrophic Lafayette River, a tidal tributary within Chesapeake Bay's estuarine complex, during spring 2006. During this period two distinct algal blooms occurred; the first was a cryptomonad bloom and this was followed by a bloom of the mixotrophic …

Environmental History Of Marine Mammal Exploitation In Trinidad And Tobago, W.I. And Its Ecological Impact, Aldemaro Romero Jr., Ruth Baker, Joel E. Creswell, Anuradha Singh, Annabelle Mckie, Michael Manna

Publications and Research

No abstract provided.

The Social Structure And Mating Strategies Of Bottlenose Dolphins (Tursiops Truncatus) In The St. Johns River, Jessica Lea Ermak

UNF Graduate Theses and Dissertations

Across populations, bottlenose dolphins (Tursiops sp.) exhibit a fission-fusion pattern of associations, in which group size and composition change fluidly throughout the day. Beneath this seemingly ephemeral social structure, considerable variation exists across study sites. While females typically have moderate bonds with one another within a large social network, male-male bonds are variable, though males typically take one of two strategies; some males encounter females individually for opportunities to breed while others cooperate within a first-order alliance to collectively herd females. In addition, multi-tiered alliances in which two first-order alliances cooperate to defend or assist in the theft of a …

Host Behavior Alters Spiny Lobster-Viral Disease Dynamics: A Simulation Study, Thomas W. Dolan Iii, Mark J. Butler Iv, Jeffrey D. Shields

Biological Sciences Faculty Publications

Social behavior confers numerous benefits to animals but also risks, among them an increase in the spread of pathogenic diseases. We examined the trade-off between risk of predation and disease transmission under different scenarios of host spatial structure and disease avoidance behavior using a spatially explicit, individual-based model of the host pathogen interaction between juvenile Caribbean spiny lobster (Panulirus argus) and Panulirus argus Virus 1 (PaV1). Spiny lobsters are normally social but modify their behavior to avoid diseased conspecifics, a potentially effective means of reducing transmission but one rarely observed in the wild. We found that without lobster avoidance of …

Concordant Phylogenetic Patterns Inferred From Mitochondrial And Microsatellite Dna In The Giant Clam Tridacna Crocea, Timery S. Deboer, Ma Rio Abdon Naguit, Mark V. Erdmann, Maria Carmen A. Ablan-Lagman, Ambariyanto, Kent E. Carpenter, Abdul Hamid A. Toba, Paul H. Barber

Biological Sciences Faculty Publications

The boring giant clam, Tridacna crocea Lamarck, 1819, is a CITES-listed bivalve that is declining due to overharvest and environmental degradation. Previous molecular studies in the Coral Triangle using mitochondrial DNA indicated the presence of deep phylogenetic divergence and strong phylogeographic structure across this region, suggesting the possibility of multiple cryptic species. In the present study, we compare data from non-recombining mitochondrial (mtDNA; cytochrome oxidase subunit 1, COI) and eight microsatellite loci to better understand patterns of genetic structure and species boundaries in T. crocea populations across Indonesia and the Philippines. Microsatellite loci and mtDNA data from 618 individuals representing …

Effects Of Salinity And Dissolved Organic Matter On Cu Toxicity To Americamysis Bahia In Estuarine Environments, Rabia Nasir

Theses and Dissertations (Comprehensive)

As salinity increases the geochemical speciation of Cu is altered as a result of organic/inorganic complexation/competition. Such salinity changes may further challenge the osmoregulatory capabilities of euryhaline organisms. This chemical-biological interaction complicates the understanding of the impacts of Cu in estuarine waters. Dissolved organic matter (DOM) has been widely established to be an important modifier of Cu toxicity in freshwaters however its effectiveness in modulating Cu toxicity across the range of salinities that occur in estuarine conditions has not been studied in a systematic manner. Site to site differences in DOM quality with respect to the potential for toxicity mitigation …

Distribution And Elimination Of 3-Trifluoromethyl-4-Nitrophenol (Tfm) By Sea Lamprey (Petromyzon Marinus) And Non-Target, Rainbow Trout (Oncorhynchus Mykiss) And Lake Sturgeon (Acipenser Fulvescens), Michael W. Le Clair

Theses and Dissertations (Comprehensive)

The pesticide, 3-trifluoromethyl-4-nitrophenol (TFM), has been highly successful in the control of sea lamprey (Petromyzon marinus) populations in the Great Lakes. Treatments with TFM involve applying it to streams, where it targets larval sea lamprey which live burrowed in the stream substrate. While the toxic mechanism of TFM has been elucidated, and its effects on sea lamprey described, its effects on non-target fish species such as rainbow trout (Oncorhynchus mykiss) and lake sturgeon (Acipenser fulvescens) are not as well understood. The present work demonstrated that rainbow trout show a great capacity to detoxify the lampricide using glucuronidation, when exposed to …

Developing Important Marine Mammal Area Criteria: Learning From Ecologically Or Biologically Significant Areas And Key Biodiversity Areas, Collenn M. Corrigan, Jeff A. Ardron, Mia T. Comeros-Raynal, Erich Hoyt, Giuseppe Notarbartolo Di Sciara, Kent E. Carpenter

Biological Sciences Faculty Publications

1. This paper explores how criteria to identify important marine mammal areas (IMMAs) could be developed, and nested in existing global criteria. This process would consider 134 species of marine mammals. 2. Particular attention is given to two suites of global criteria to identify areas important for the persistence of marine biodiversity: Ecologically or Biologically Significant Areas (EBSAs) developed through the Convention on Biological Diversity (CBD), and Key Biodiversity Areas (KBAs) in revision through the International Union for the Conservation of Nature (IUCN). They are seen as mutually complementary in the development of IMMAs. 3. The specificities necessary for identifying …

Effects Of Predation Upon The Long-Spined Sea Urchin Diadema Antillarum By The Spotted Spiny Lobster Panulirus Guttatus, Meredith D. Kintzing, Mark J. Butler Iv

Biological Sciences Faculty Publications

Sea urchins, important herbivores in marine ecosystems, are strongly impacted by both the direct and indirect effects of predation, and the long-spined sea urchin Diadema antillarum is no exception. Once abundant on Caribbean coral reefs, D. antillarum populations were decimated by disease in the early 1980s, and only where their natural predators have been over-fished has D. antillarum recovery been observed. Spiny lobsters (Palinuridae) are predators of sea urchins, and although there are several species of spiny lobster in the Caribbean, only the spotted spiny lobster Panulirus guttatus is restricted to coral reefs where D. antillarum dwells. We investigated the …

So, You Want To Use Next Generation Sequencing In Marine Systems? Insight From The Pan Pacific Advanced Studies Institute, D. A. Willette, F. W. Allendorf, P. H. Barber, D. J. Barshis, K. E. Carpenter, E. D. Crandall, W. A. Cresko, I. Fernandez-Silva, M. V. Matz, E. Meyer, M. D. Santos, L. W. Seeb, J. E. Seeb

Biological Sciences Faculty Publications

The emerging field of next-generation sequencing (NGS) is rapidly expanding capabilities for cutting edge genomic research, with applications that can help meet marine conservation challenges of food security, biodiversity loss, and climate change. Navigating the use of these tools, however, is complex at best. Furthermore, applications of marine genomic questions are limited in developing nations where both marine biodiversity and threats to marine biodiversity are most concentrated. This is particularly true in Southeast Asia. The first Pan-Pacific Advanced Studies Institute (PacASI) entitled "Genomic Applications to Marine Science and Resource Management in Southeast Asia" was held in July 2012 in Dumaguete, …

Reproductive Success In Hatchery-Produced Eastern Oyster, Crassostrea Virginica (Gmelin), April Piggott

Theses and Dissertations

The eastern oyster (Crassostrea virginica Gmelin 1791) has great ecological and economic importance but populations have declined, especially in Chesapeake Bay, to historically low numbers. Hatcheries strive to produce oysters with beneficial characteristics for supplementation and commercial purposes, both natural and stimulated mass spawning. Unequal contribution of parents in mass spawnings potentially can lead to high levels of inbreeding and a loss of beneficial characteristics in offspring. In this study, we determined microsatellite genotypes for parents (n^parents =24, 49, and 77 parents) and progeny (n=96 each) of three hatchery-produced families and used the data for parental assignment. We observed the …

Energetic Demands Of Immature Sea Otters From Birth To Weaning: Implications For Maternal Costs, Reproductive Behavior And Population-Level Trends, Nicole Thometz, M. T. Tinker, M. M. Staedler, K. A. Mayer, T. M. Williams

Biology Faculty Publications

Sea otters (Enhydra lutris) have the highest mass-specific metabolic rate of any marine mammal, which is superimposed on the inherently high costs of reproduction and lactation in adult females. These combined energetic demands have been implicated in the poor body condition and increased mortality of female sea otters nearing the end of lactation along the central California coast. However, the cost of lactation is unknown and currently cannot be directly measured for this marine species in the wild. Here, we quantified the energetic demands of immature sea otters across five developmental stages as a means of assessing the …

Sarpa Salpa Herbivory On Shallow Reaches Of Posidonia Oceanica Beds, Latina Steele, Kelly M. Darnell, Just Cebrián, Jose Luis Sanchez-Lizaso

Biology Faculty Publications

Sarpa salpa herbivory on shallow reaches of Posidonia oceanica beds.— Here, we examined the temporal and small–scale spatial variability of grazing by the herbivorous fish Sarpa salpa on shallow beds of the temperate seagrass Posidonia oceanica. Herbivory intensity expressed as the percent of leaf area taken by fish bites was higher in September 2006 than in February 2007, and at 0.5 m than at 1.5 m during both sampling times. All S. salpa feeding at the shallow locations studied were juveniles, with bite sizes ranging from 0.03 to 0.62 cm2. Juveniles feeding at 1.5 m were larger in February 2007 …

ประชาคมฮาร์แพกทิคอยด์โคพีพอดบริเวณป่าชายเลนชุมชนบ้านทุ่งตะเซะ จังหวัดตรัง, ปัทมาภรณ์ ชัยมัง

Chulalongkorn University Theses and Dissertations (Chula ETD)

การศึกษาประชาคมฮาร์แพกทิคอยด์โคพีพอดบริเวณป่าชายเลนชุมชนบ้านทุ่งตะเซะ จังหวัดตรัง ซึ่งเป็นพื้นที่ป่าชายเลนที่อุดมสมบูรณ์แบ่งพื้นที่ศึกษาออกเป็น 7 สถานี มี 3 พื้นที่หลัก คือ พื้นที่ป่าชายเลนด้านในที่ติดแผ่นดินและบริเวณคลองด้านใน พื้นที่ป่าชายเลนด้านนอกที่ติดทะเลในบริเวณคลองเกาะเคี่ยม และบริเวณเกาะกลางที่อยู่ตรงข้ามศูนย์อนุรักษ์หอยปะของชุมชน ทำการเก็บตัวอย่าง 4 ครั้งคือ ช่วงก่อนการปลูกป่าซึ่งเป็นการปลูกเสริมและฟื้นฟูในเดือนตุลาคม 2553 (ฤดูฝน) หลังจากปลูกป่า 6 เดือนในเดือนเมษายน 2554 (ฤดูแล้ง) หลังจากปลูกป่า 1 ปี 6 เดือนในเดือนเมษายน 2555 (ฤดูแล้ง) และหลังจากปลูกป่า 2 ปี 6 เดือนในเดือนพฤษภาคม 2556 (ฤดูแล้ง) พบสัตว์ทะเลหน้าดินเล็กทั้งหมด พบทั้งสิ้น 12 ไฟลัม แบ่งออกเป็น 29 กลุ่ม สัตว์ทะเลหน้าดินขนาดเล็กที่พบเป็นกลุ่มเด่นคือ Nematodes, Foraminiferans และ Harpacticoid copepods ความหนาแน่นของสัตว์ทะเล หน้าดินขนาดเล็กในบริเวณป่าชายเลนตอนในและตอนนอกของป่าชายเลนชุมชนบ้านทุ่งตะเซะ จังหวัดตรัง ทั้งในช่วงก่อนและหลังปลูกป่า 2 ปี 6 เดือน มีค่าอยู่ในเกณฑ์สูง ซึ่งมีความหนาแน่นสูงกว่า 500 ตัวต่อ 10 ตารางเซนติเมตร แสดงว่าบริเวณนี้เป็นป่าที่มีความอุดมสมบูรณ์ และพบว่าความหนาแน่น มีค่าสูงขึ้นภายหลังจากการปลูกป่า ฮาร์แพกทิคอยด์โคพีพอดในบริเวณป่าชายเลนชุมชนบ้านทุ่งตะเซะ จังหวัดตรังพบทั้งสิ้น 8 วงศ์ ได้แก่ Cletodidae, Darcythompsoniidae, Ectinosomatidae, Harpacticidae, Metidae, Miraciidae, Thalestridae และ Tisbidae โดยพบวงศ์ Cletodidae เป็นกลุ่มเด่น ความหนาแน่นของฮาร์แพกทิคอยด์โคพีพอดบริเวณป่าชายเลนตอนในมีค่าอยู่ในช่วง 9-185 ตัวต่อ 10 ตารางเซนติเมตร ส่วนป่าชายเลนตอนนอกมีความหนาแน่นอยู่ในช่วง 22-169 ตัวต่อ 10 ตารางเซนติเมตร หลังจากปลูกป่าพบว่าความหนาแน่นมีค่าสูงขึ้นเกือบทุกบริเวณที่ทำการศึกษา ยกเว้นบริเวณป่าชายเลนตอนในในสถานีป่าไม้ตะบูนที่ความหนาแน่นช่วงก่อนและหลังปลูกป่ามีค่าใกล้เคียงกัน การศึกษาการกินอาหารของฮาร์แพกทิคอยด์โคพีพอดบริเวณป่าชายเลนชุมชนบ้านทุ่งตะเซะ สามารถจัดกลุ่มการกินอาหารของฮาร์แพกทิคอยด์โคพีพอดได้ทั้งสิ้น 5 กลุ่ม …

Global Priorities For Marine Biodiversity Conservation, Elizabeth R. Selig, Will R. Turner, Sebastian Troëng, Bryan P. Wallace, Kristin Kaschner, Ben G. Lascelles, Kent E. Carpenter, Russell A. Mittermeier

Biological Sciences Faculty Publications

In recent decades, many marine populations have experienced major declines in abundance, but we still know little about where management interventions may help protect the highest levels of marine biodiversity. We used modeled spatial distribution data for nearly 12,500 species to quantify global patterns of species richness and two measures of endemism. By combining these data with spatial information on cumulative human impacts, we identified priority areas where marine biodiversity is most and least impacted by human activities, both within Exclusive Economic Zones (EEZs) and Areas Beyond National Jurisdiction (ABNJ). Our analyses highlighted places that are both accepted priorities for …

Can We Predict The Future: Juvenile Finfish And Their Seagrass Nurseries In The Chesapeake Bay, Cynthia M. Jones

OES Faculty Publications

The importance of estuarine seagrass beds as nurseries for juvenile fish has become a universal paradigm, especially for estuaries that are as important as the Chesapeake Bay. Yet, scientific tests of this hypothesis were equivocal depending on species, location, and metrics. Moreover, seagrasses themselves are under threat and one-third of seagrasses have disappeared worldwide with 65 of their losses occurring in estuaries. Although there have been extensive studies of seagrasses in the Chesapeake Bay, surprisingly few studies have quantified the relationship between seagrass as nurseries for finfish in the Bay. Of the few studies that have directly evaluated the use …

Degradable Plastics And Their Potential To Affect Solid Waste Systems, Krista L. Thyberg, David J. Tonjes

Technology & Society Faculty Publications

Plastic waste forms a substantial part of municipal solid waste and has caused environmental concerns, particularly due to chemical contamination of the environment and effects from persistent litter. Plastics also complicate waste management processes, such as by having poor recovery rates through recycling, and causing contamination in composting operations. One potential means to address some of these challenges is through degradable plastics which, unlike conventional plastics, are designed to decompose at an accelerated rate in specific environments. Degradable plastics aim to address the end-of-life of plastic products and are intended to reduce the environmental impacts associated with their use and …

Reproductive Phase Determination In Male Meagre (Argyrosomus Regius, Sciaenidae): Testis Development And Histologic Corroboration Of A Gross Anatomical Scale, Nuno Prista, Leonel Gordo, Jose L. Costa, Maria J. Costa, Cynthia M. Jones

OES Faculty Publications

Reproductive stage determination of male gonads has received sparse attention in fish biology literature with few studies detailing the building of gross anatomical-and histologic scales. The meagre (Argyrosomus regius) is one of the world's largest sciaenids and supports a significant regional fishery in European and North African waters whose reproductive patterns are yet to be fully investigated. In the present study, we derive a macroscopic grading system for meagre testis using semi-quantitative graphs that feature the testis variability along the species size range and time of the year. We then describe the histological stages and reproductive phases of …

Lack Of Equivalence In The Elemental And Stable Isotope Chemistry Within The Sagittal Otolith Pair Of The Summer Flounder, Paralichthys Dentatus, Antranik Kajajian, Jason J. Schaffler, Cynthia M. Jones

OES Faculty Publications

In fish that are not bilaterally symmetrical, the left and right sagittae are often not symmetrical, exhibiting divergent growth patterns and mass, and may have differences in chemical composition. We investigated this in the asymmetrical summer flounder Paralichthys dentatus, collected from different nursery habitats along the US east coast. Significant differences were detected in otolith mass, δ¹³C, δ¹⁸O, Li:Ca, Mg:Ca, and Sr:Ca, and overall chemical signatures. These results refute the hypothesis of left-right equivalence that is prevalent for bilaterally symmetrical fishes. We tested whether a specific side was better suited for classification. The best models …

Phytoplankton And Nutrient Dynamics In A Tidally Dominated Eutrophic Estuary: Daily Variability And Controls On Bloom Formation, Ryan E. Morse, Margaret R. Mulholland, Todd A. Egerton, Harold G. Marshall

OES Faculty Publications

To better understand nutrient dynamics and factors that promote the initiation of algal blooms, the Lafayette River, a tidal subestuary of Chesapeake Bay that experiences seasonal algal blooms, was sampled daily for a period of 54 d in the fall of 2005. Three phytoplankton blooms (chl a concentrations exceeding twice the average of monthly measurements from 2000 to 2009) occurred during this period: a mixed bloom of Akashiwo sanguinea and Gymnodinium sp., a monospecific Skeletonema costatum bloom, and a monospecific Gymnodinium sp. bloom. Over the sampling period, nutrient concentrations increased following precipitation events and were elevated between bloom periods but …

The Impact Of Sea Surface Temperature On Outbreaks Of Acanthaster Planci On The Great Barrier Reef, Laura A. Grossman

Scripps Senior Theses

The causes of increasing outbreaks of Acanthaster planci on the Great Barrier Reef have been a point of hot debate in recent years. It is unknown whether the increased success is due to nutrient runoff, salinity levels, or a decrease in predation, among other possibilities. In this paper I argue that the primary influence on outbreak status is sea surface temperature. From existing literature, I demonstrate that sea surface temperature in the Great Barrier Reef has increased by 0.4°C per year over the past three decades. I attempt to tie this increase with an increase in frequency of A. planci …

Effect Of Feed Additives On Amino Acid And Dipeptide Transport By Intestines Of American Lobster And Atlantic White Shrimp, Maria Louise Peterson

UNF Graduate Theses and Dissertations

Previous nutritional physiology research using L-histidine and zinc in American lobster intestine (Homarus americanus) has suggested that these solutes can be co-transported as complexes (Histidine-Zinc-Histidine) across the intestine using a peptide transporter. Furthermore, transport of L-leucine was shown to be inhibited by high calcium concentrations. Dipeptide and bis-complex transport and the role of calcium were investigated in the perfused intestines of lobster and Atlantic white shrimp (Litopenaeus setiferus). Following trans-intestinal transport, serosal medium was analyzed for amino acid composition by gas chromatography. In lobster, the transport of glycylsarcosine (Gly-Sar) from mucosa to serosa was stimulated two-fold …

Sessile Invertebrate Colonization On Rocky Outcrops At Gray's Reef National Marine Sanctuary, Brittany Poirson

College of Graduate Studies: Theses & Dissertations

Documenting patterns of sessile invertebrate community development is important for predicting recovery patterns after disturbance and designing effective marine reserves. In the South Atlantic Bight, invertebrate assemblages can differ significantly from one rocky outcrop to another, but the factors driving these differences are not well understood. I tracked community development for fourteen months at four rocky outcrops at Gray’s Reef National Marine Sanctuary (GRNMS) to address the predictions that (i) developing sessile invertebrate communities in this system do not exhibit a predictable pattern of succession and (ii) recolonization patterns for small patches of open space that become available are influenced …

Sedimentation And Barnacle Recruitment And Growth In A Shallow Coastal Lagoon Of South Texas, John Jack Gray

Theses and Dissertations - UTB/UTPA

According to the United States Environmental Protection Agency, one of this nation’s greatest concerns to the receiving waters of an aquatic system is the impairment of water quality due to sediment transport. Thus, an aquatic system whose receiving waters are subject to unrestrained sediment transport from a spoil bank, which is an unstabilized depository for sediment acquired during a dredge, should be a concern. In this study an attempt was made to assess sedimentation and its effect on the life cycle of sessile aquatic life over a year. South Bay was chosen for the study site because it is adjacent …

Integrating Societal Perspectives And Values For Improved Stewardship Of A Coastal Ecosystem Engineer, Steven B. Scyphers, J. Steven Picou, Robert D. Brumbaugh, Sean P. Powers

University Faculty and Staff Publications

Oyster reefs provide coastal societies with a vast array of ecosystem services, but are also destructively harvested as an economically and culturally important fishery resource, exemplifying a complex social-ecological system (SES). Historically, societal demand for oysters has led to destructive and unsustainable levels of harvest, which coupled with multiple other stressors has placed oyster reefs among the most globally imperiled coastal habitats. However, more recent studies have demonstrated that large-scale restoration is possible and that healthy oyster populations can be sustained with effective governance and stewardship. However, both of these require significant societal support or financial investment. In our study, …

Influence Of Hydrological And Environmental Conditions On Mangrove Vegetation At Coastal And Inland Semi-Arid Areas Of The Gascoyne Region, Natasha Robin Dunham

Theses: Doctorates and Masters

Mangrove stands are uncommon within semi-arid climates and rare within inland systems. It is uncertain whether the same environmental variables influence mangroves growing in a semi-arid climate as the trees growing in tropical and sub-tropical areas. Field studies conducted on the ecophysiological responses of the mangrove species Avicennia marina are few; however hydrological regimes are considered the key factor influencing mangrove stand zonation, structure and individual tree growth. The Gascoyne region of Western Australia provides a unique opportunity to investigate whether mangroves growing within an inland semi-arid environment display similar growth patterns and ecophysiological responses to their coastal counterparts.

This …