Marine Biology Commons^™

Modeling Photosynthesis Of Spartina Alterniflora (Smooth Cordgrass) Impacted By The Deepwater Horizon Oil Spill Using Bayesian Inference, Wei Wu, Patrick D. Biber, Mark S. Peterson, Chongfeng Gong

Faculty Publications

To study the impact of the Deepwater Horizon oil spill on photosynthesis of coastal salt marsh plants in Mississippi, we developed a hierarchical Bayesian (HB) model based on field measurements collected from July 2010 to November 2011. We sampled three locations in Davis Bayou, Mississippi (30.375 degrees N, 88.790 degrees W) representative of a range of oil spill impacts. Measured photosynthesis was negative (respiration only) at the heavily oiled location in July 2010 only, and rates started to increase by August 2010. Photosynthesis at the medium oiling location was lower than at the control location in July 2010 and it …

Spatial And Oceanographic Factors Affecting Black-Legged Kittiwake And Thick-Billed Murre Distributions In The Southeastern Bering Sea, Brian Hoover

Capstone Projects and Master's Theses

The distribution patterns of Thick-billed Murres (Uria lomvia) and Black-legged Kittiwakes (Rissa tridactyla) in the southeastern Bering Sea were documented at sea during vessel-based surveys in July-August of 2008 and 2009. The relationships of murre and kittiwake densities with environmental variables were investigated using binomial generalized additive models (GAMs) to model the presence or absence of birds, and Gamma-error distribution GAMs to model the positive densities of birds. Environmental variables included oceanographic factors (Chlorophyll, Chlorophyll anomalies, Daily SST, Monthly SST), spatial factors (Distance to nearest colony, Distance to 300m shelf break, Depth), and a temporal factor (Year). Nocturnal surveys were …

Assessment Of Genetic Connectivity And Potential Management Plans For The Coral Reef Ecosystems Of Guna Yala, Panama, Molly Mcentee

Independent Study Project (ISP) Collection

Genetic connectivity between three populations of the common reef sea urchin, Echinometra lucunter located in fringing reefs off the islands of Ukuptupu, Wichupwala and Porvenir in western Guna Yala was analyzed to give insight into population distribution and the most effective conservation management plans for the area. The reefs of Guna Yala are facing many threats on a global or regional scale including global warming, ocean acidification, sea level rise, disease and severe storms. On a local level, increasing stress is being placed on these reef ecosystems from human activity including coral mining, overfishing, and pollution. In order to prevent …

Life History Of Stranded Bottlenose Dolphins (Tursiops Truncatus) In Virginia, Margaret Cook Lynott

Biological Sciences Theses & Dissertations

Little is known about the life history and overall ecology of bottlenose dolphins that strand in Virginia. In this study, I examined archived life history samples and stranding data from bottlenose dolphins found in Virginia waters to (1) develop growth curves based on ages from sectioned teeth, (2) document characteristics of male and female reproductive organs, and (3) define the relationship between age/length and presence of neonatal characteristics during the first year of life. The Gompertz growth model provided the best fit of growth data for stranded T. truncatus in Virginia. Length at birth and asymptotic length for males were …

Eelgrass Distribution In The Great Bay Estuary For 2011, Frederick T. Short

PREP Reports & Publications

Eelgrass in the Great Bay Estuary declined in both distribution and biomass between 2010 and 2011. In 2011, eelgrass was once again mainly present in the Great Bay itself with limited distribution in Portsmouth Harbor and Little Bay. Eelgrass distribution in Great Bay itself decreased between 2010 and 2011 and experienced an alarming 26% loss of biomass in a single year. In Great Bay itself there has been a loss of 35% of eelgrass distribution since 1996. In 2011, despite recent consecutive excellent growing years in terms of weather, we saw a reverse of the trend of slight increases in …

Eelgrass Distribution In The Great Bay Estuary For 2010, Frederick T. Short

PREP Reports & Publications

The following is a revision of the 2010 eelgrass status report submitted to the Piscataqua Region Estuaries Partnership by Dr. Fred Short, correcting an error in eelgrass percent cover classification discovered by PREP staff during their QA/QC process. Eelgrass in the Great Bay Estuary in 2010 was once again mainly present in the Great Bay itself with limited distribution in Portsmouth Harbor. In 2010, Portsmouth Harbor experienced a 9% loss of eelgrass distribution since 2009, for a loss of 47% of the Harbor’s eelgrass distribution since 1996, an alarming trend. For the third year in a row in the Piscataqua …

Sequencing And Analysis Of The Gastrula Transcriptome Of The Brittle Star Ophiocoma Wendtii, Roy Vaughn, Nancy Garnhart, James R. Garey, W. Kelley Thomas, Brian T. Livingston

Hubbard Center for Genome Studies (HCGS)

Background

The gastrula stage represents the point in development at which the three primary germ layers diverge. At this point the gene regulatory networks that specify the germ layers are established and the genes that define the differentiated states of the tissues have begun to be activated. These networks have been well-characterized in sea urchins, but not in other echinoderms. Embryos of the brittle star Ophiocoma wendtii share a number of developmental features with sea urchin embryos, including the ingression of mesenchyme cells that give rise to an embryonic skeleton. Notable differences are that no micromeres are formed during cleavage …

Small-Scale Mapping Of Indeterminate Arborescent Acroporid Coral (Acropora Cervicornis) Patches, Brian K. Walker, E. A. Larson, Alison L. Moulding, David S. Gilliam

Marine & Environmental Sciences Faculty Articles

Western Atlantic populations of the staghorn coral Acropora cervicornis have drastically declined over the past few decades. Hence, interest in its ecology and spatial extent has increased. Acroporid corals with indeterminate arborescent growth like A.cervicornis primarily reproduce asexually by fragmentation, which can lead to extensive monotypic patches. Since fragmentation is a major component in indeterminate acroporid reproduction, these patches may expand or move over time. Periodic perimeter mapping facilitates comparison of patch areas to determine movement or expansion. A repeatable, low-cost method using a differential GPS carried by a snorkeler was employed to map the perimeter of A.cervicornis …

A New Us Polar Research Vessel For The Twenty-First Century, Robert B. Dunbar, Jon Alberts, Carin Ashjian, Vernon Asper, Dale Chayes, Eugene Domack, Hugh Ducklow, Bruce Huber, Lawrence Lawver, Daniel Oliver, Doug Russell, Craig R. Smith, Maria Vernet

Faculty Publications

Scientific and political interests at the poles are significant and rapidly increasing, driven in part by the effects of climate change and emerging geopolitical realities. The polar regions provide important services to global ecosystems and humankind, ranging from food and energy to freshwater and biodiversity. Yet the poles are experiencing changes at rates that far outpace the rest of the planet. Coastal Arctic communities are impacted by climate change through coastal erosion, sea level rise, ice loss, and altered marine food webs, threatening the future of their subsistence lifestyle. Climate change has dramatically increased the melt rate of ice sheets …

Prioritizing Key Resilience Indicators To Support Coral Reef Management In A Changing Climate, Tim R. Mcclanahan, Simon D. Donner, Jeffrey Allen Maynard, M. Aaron Macneil, Nicholas Anthony James Graham, Joseph M. Maina, Andrew C. Baker, Jahson Berhane Alemu I, Maria Beger, Robert Van Woesik

Ocean Engineering and Marine Sciences Faculty Publications

Managing coral reefs for resilience to climate change is a popular concept but has been difficult to implement because the empirical scientific evidence has either not been evaluated or is sometimes unsupportive of theory, which leads to uncertainty when considering methods and identifying priority reefs. We asked experts and reviewed the scientific literature for guidance on the multiple physical and biological factors that affect the ability of coral reefs to resist and recover from climate disturbance. Eleven key factors to inform decisions based on scaling scientific evidence and the achievability of quantifying the factors were identified. Factors important to resistance …

Ocean Governance: The New Zealand Dimension Full Report, Michael Vincent Mcginnis

Working Papers

The primary goal of this report is to provide interested members of the public and policymakers with a general overview and a description of the types of principles, planning tools, and policy instruments that can be used to strengthen and improve marine governance in New Zealand. As extractive uses (hydrocarbons and minerals, in particular) ramp up and others are explored and brought on line in the marine areas of New Zealand, the need will increase for a more integrative, ecosystem-based approach to marine governance.

This study is based on the following types of analysis:

• a review of the literature …

The Role Of Individual Behavior Type In Mediating Indirect Interactions, Blaine D. Griffen, Benjamin J. Toscano, John Gatto

Faculty Publications

Trait-mediated indirect interactions (TMII) play an important role in structuring natural communities, and numerous studies have experimentally demonstrated their presence in a variety of systems. However, these studies have largely examined the presence or absence of traits that are responsible for these interactions, without considering natural variation between individuals in the extent to which these traits are manifested. We used a well-documented TMII to investigate the importance of individual behavior type for determining the strength of the TMII. The toadfish Opsanus tau has an indirect positive influence on bivalve survival because the mud crab Panopeus herbstii, a consumer of bivalves, …

A Genetic Survey Of English Sole Populations In The Salish Sea, Elizabeth S. Gutierrez, Gary A. Winans, Jon Baker, Amanda Cope

STAR Program Research Presentations

This summer I interned at the Northwest Fisheries Science Center in Seattle, WA and participated in NOAA’s Salish Sea Project. The Salish Sea Project’s goal is to identify genetically distinctive groups of species in the Salish Sea that may have unique evolutionary and/or adaptive backgrounds. These findings will allow NOAA to promote and monitor the natural production of species in the Salish Sea, to select representative populations for experimental work regarding pollution, ocean acidification and climate change, to contribute to managing the ecosystem for intra- and inter-species diversity, and to help make informed decisions about adaptive management and marine protected …

Using Stable Isotope Analysis To Study Zooplankton Trophic Ecology In San Francisco Estuary, Steven C. Westbrook, Julien Moderan, Wim Kimmerer

STAR Program Research Presentations

Zooplankton biomasses in estuaries are often high and represent an important food source for fish, like theendangered Delta Smelt. Human interferences (nitrates from crops, freshwater flow alteration, invasive species introduction…) have altered the structure of the San Francisco Estuary (SFE) ecosystem. We use stable isotope analysis to improve our knowledge of the planktonic food web in the SFE and gain insights into its evolution over the past decades. Every living thing has a specific isotopic signature. For example, in the plankton we study exists Carbon 13 and Carbon 12. Carbon 13 is different only because it has one extra neutron, …

Functional Response Of Protected Larval Stage Delta Smelt (Hypomesus Transpacificus), Jorge Ruiz, Lindsay Sullivan, Wim Kimmerer, Joan Lindberg

STAR Program Research Presentations

Delta smelt (Hypomesus transpacificus) is a protected slender-bodied fish endemic to the San Francisco Estuary. Smelt prey upon various zooplankton including the copepods such as Pseudodiaptomus forbesi. This experiment studied the prey maximum feeding rate of 2 larval stages (21 DHP, 35 DPH) of Delta smelt on various concentrations of P. forbesi. The copepod prey was offered at 7 different concentrations (2No./L–120No./L). After feeding was terminated the free prey and ingested prey were counted and analyzed to find the feeding rate of Delta smelt. Maximum feeding rate was found to be at much higher prey densities …

Developing Monitoring Methods For Leptasterias Spp. As Sentinel Species In Detecting Local Environmental Changes, Zachary Sturbaum, Kathryn Nuessly, Riley J. Smith, C. Sarah Cohen

STAR Program Research Presentations

Leptasterias spp., a six-rayed sea star, is found in rocky intertidal habitats ranging from Alaska to central California. Leptasterias spp. can be monitored on a broad scale throughout their range by a variety of means using timed counts and random plot censusing in order to detect both large-scale and local-level changes in the environment due to climate change, land-based human activity, or other environmental events. Leptasterias brood their young externally until the embryos grow into fully developed juveniles. These juveniles disperse by crawling away, limiting their dispersal potential. This localized dispersal provides an opportunity to use Leptasterias spp …

The Bathypelagic Biome Of The Atlantic Ocean: Character And Ecological Discreteness Of The Fish Fauna, Tracey Sutton, Odd Aksel Bergstad, Ann Bucklin, Scott E. Burghart, April B. Cook, Tone Falkenhaug, T. L. Hopkins, F. M. Porteiro, Sigrid Schiel, Joseph J. Torres, M. Vecchione, Peter Wiebe

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Recent global synthetic analyses have revealed that marine taxonomic inventories are far from complete, nowhere more so than in the deep-pelagic ocean. At over a billion km3, it is the largest biome on Earth, yet only a tiny fraction of the biogeographic records include the bathypelagic fauna. This data gap served as the impetus for recent deepwater surveys, many of which have altered our perceptions of pelagic ecosystems. Here we examine data from four deep-pelagic (0-5000+ m) sampling programs in the Atlantic (60°N-25°S) in order to assess the character of bathypelagic fish communities with respect to faunal distinctiveness and ecological …

Testing The Salinity Tolerance Levels Of Similar Invasive Species Found In The San Francisco Bay, Julia M. Smith, C. Sarah Cohen, Elizabeth Sheets

STAR Program Research Presentations

Testing the salinity tolerance levels of similar invasive species found in the San Francisco Bay

Julia Smith^1,2, Elizabeth Sheets², and C. Sarah Cohen²

¹Department of Teacher Education, California State University, Sacramento ²Department of Biology and Romberg Tiburon Center, San Francisco State University

Three non-indigenous colonial ascidian species, Botrylloides violaceus, Botrylloides diegensis, and Botryllus schlosseri, have become well established in San Francisco Bay. Two species, B. violaceous and B. schlosseri, are globally distributed, and understanding the salinity ranges and tolerances of these successful invaders in their introduced habitats is important for …

The Breathing Of The Bays, Jamie Vaudrey, Margaret (Peg) A. Van_Patten (Editor)

Wrack Lines

Bays in Long Island Sound and beyond have natural rhythms like breathing. Stress can impact the health of these natural ecosystems. While Long Island Sound has been examined for the extent of hypoxia in the summer, small embayments have not been examined carefully. In this article, two researchers investigate the oxygen, or lack of, in small bays of Long Island Sound.

Characterization Of Benthic Communities, Gregory A. Piniak, Shay Viehman, Christine M. Addison, Nicole D. Fogarty

Marine & Environmental Sciences Faculty Reports

No abstract provided.

Nutritional Content Of Rhinoceros Auklet (Cerorhinca Monocerata) Bill Loads, Dustin Taylor, Ron Heintz

STAR Program Research Presentations

Nutritional Content of Rhinoceros Auklet Bill Loads

Dustin E Taylor

Abstract

An adult Rhinoceros Auklet (Cerorhinca monocerata) can only catch and carry a limited amount of prey to their nestlings after a foraging trip. The auklets therefore must maximize their efficiency by bringing back the most proportionally nutritious prey items to their nestlings. The prey carried back to the nesting sites (known as a ‘bill load’) can contain whole fish, as well as parts, most commonly fish heads. This study is aimed to determine whether returning with just heads to the nestlings was proportionally more nutritious than bringing …

Effects Of Pristane On Growth Of Pink Salmon (Oncorhynchus Gorbuscha), Brielle D. Kemis, Bonita Nelson

STAR Program Research Presentations

Pristane is a naturally occurring hydrocarbon that is generated by copepods in marine ecosystems. Organisms that eat copepods do not readily metabolize pristane, which causes it to accumulate throughout the marine food web. Understanding how pristane affects marine fish is essential because pristane is often used as a bioindicator in lab studies and may be influencing results in those studies. Also, this hydrocarbon may significantly reduce growth of marine fish in the wild. A previous study indicated that pristane is an appetite suppressant and growth retardant in fish. However, the study implemented a feeding regime with unnaturally high levels of …

The Consumption Of Dha During Embryogenesis As An Indicative Of The Need To Supply Dha During Early Larval Development: A Review, Joana Figueiredo, Junda Lin, Justin Anto, Luis Narciso

Marine & Environmental Sciences Faculty Articles

The establishment of an adequate larval diet for crustacean and fish often involves a series of time-consuming and expensive trial and errors. Despite being nutritionally poor, rotifers and Artemia are the most commonly used preys in larviculture. Whether (and to what extent) the prey needs to be enriched with essential fatty acids differs from species to species. We hypothesized that the DHA content of a newly spawned eggs and its consumption through embryogenesis can be a good indicator of the need to enrich the prey with DHA. In order to assess this hypothesis, we performed a search in the scientific …

Likely Effectiveness Of Netting Or Other Capture Programs As A Shark Hazard Mitigation Strategy In Western Australia, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Evaluating Macrobenthic Indicators Of Organic Enrichment And Hypoxia Within The Coastal Mississippi Hypoxic Zone, Daneen P. Menke

Master's Theses

Macrobenthic communities offer effective indicators of biotic integrity, but their use for distinguishing anthropogenic from natural stress is tricky because coastal taxa are eurytolerant. Effective coastal management calls for benthic indicators that respond to specific stressors, apply across different habitats, and reflect ecosystem function. Macrobenthic process metrics based on body-size descriptors should reflect ecosystem function and be useful for assessing the effects of eutrophication. Functional trait analysis should reflect the functional diversity of the community. Coastal Mississippi experienced widespread and sustained hypoxia throughout summer 2008. Site 6 located on the 10-m isobath in the center of the 2008 hypoxic zone …

Phase Speciation Of Carbohydrates And Dioxins In Rivers And Coastal Waters In The Northern Gulf Of Mexico, Kusumica Mitra

Master's Theses

Dissolved carbohydrates (d-CHO), including monosaccharide (MCHO) and polysaccharides (PCHO), and particulate carbohydrates (p-CHO) are major components of natural organic matter and play an important role in biogeochemical cycles of carbon and other trace elements in marine environments. This study aimed to examine the abundance and partitioning of CHO between dissolved and particulate phases and their seasonal variations in the Mississippi Sound/Bight and Lake Pontchartrain. Laboratory mixing experiments were also carried out to examine the behaviour of CHO species along a salinity gradient. The phase partitioning of dioxin among three different phases, i.e., colloidal organic matter, particulate organic matter and sediments, …

Determining The Trophic Role Of Gulf Menhaden (Brevoortia Patronus) Using Carbon And Nitrogen Stable Isotopes, Zachary Olsen

Master's Theses

Gulf menhaden (Brevoortia patronus) play multiple roles in the Gulf of Mexico coastal ecosystem as filter feeders and as an important food source for many recreationally and economically important finfish. Gulf menhaden also support a large commercial fishery, and little is known about the impact of fishing on the role of this species as a filter feeder in the food web. This study examines the spatial, temporal and ontogenetic dynamics of food selectivity and trophic role observed in Gulf menhaden. The most important dietary item for juvenile fish was found to be phytoplankton (75.7% dietary composition) while that of subadults …

Anode Material Testing For Marine Sediment Microbial Fuel Cells, Andrew John Quaid

Master's Theses

Research on the power production of the microbial fuel cell has increased in the past decade. The sediment microbial fuel cell is a type of fuel cell that uses the environment of submerged sediments to provide a natural voltage difference. The fuel cell is comprised of an anode buried in the sediment and a cathode that is held in the overlying water column. The process of electron transfer to the anode is catalyzed by anaerobic bacteria in the sediment. The anaerobic bacteria have that are able to catalyze the electron transfer have been termed exoelectrogenic. The increase in scientific research …

Understanding The Success And Failure Of Oyster Populations: Periodicities Of Perkinsus Marinus, And Oyster Recruitment, Mortality, And Size, Thomas M. Soniat, John M. Klinck, Eric N. Powell, Eileen E. Hofmann

CCPO Publications

Ten-year time series (1992 to 2002) of salinity, Dermo disease, and size-class structure and mortality measured for an eastern oyster (Crassostrea virginica) population at a reef in Bay Tambour, Terrebonne Parish, LA, were analyzed using wavelet techniques to determine dominant frequencies and correlations. Along the Gulf Coast of the United States, Dermo disease (caused by Perkinsus marinus) responds to the El Nino-Southern Oscillation (ENSO) climate signal through its response to salinity. During the La Nina portion of ENSO, decreased rainfall leads to an increase in salinity, which triggers a rise in Dermo disease prevalence and intensity, producing increased oyster mortality. …

The Consumption Of Dha During Embryogenesis As An Indicative Of The Need To Supply Dha During Early Larval Development: A Review, Joana Figueiredo, Junda Lin, Justin Anto, Luis Narciso

Ocean Engineering and Marine Sciences Faculty Publications

The establishment of an adequate larval diet for crustacean and fish often involves a series of time-consuming and expensive trial and errors. Despite being nutritionally poor, rotifers and Artemia are the most commonly used preys in larviculture. Whether (and to what extent) the prey needs to be enriched with essential fatty acids differs from species to species. We hypothesized that the DHA content of a newly spawned eggs and its consumption through embryogenesis can be a good indicator of the need to enrich the prey with DHA. In order to assess this hypothesis, we performed a search in the scientifc …