Marine Biology Commons^™

Molecular Techniques Reveal Wide Phyletic Diversity Of Heterotrophic Microbes Associated With Discodermia Spp. (Porifera: Demospongiae), Jose V. Lopez, Peter J. Mccarthy, Kathleen E. Janda, Robin Willoughby, Shirley A. Pomponi

Marine & Environmental Sciences Faculty Articles

Sponges are well known to harbor large numbers of heterotrophic microbes within their mesohyl. Studies to determine the diversity of these associated microbes have been attempted for only a few shallow water species. We cultured various microorganisms from several species of Discodermia collected from deep water using the 'Johnson-Sea-Link' manned submersibles, and characterised them by standard microbiological identification methods. Characterisation of a small proportion (ca. 10%) of the total and potential eubacterial isolate collection with molecular systematics techniques revealed a wide diversity of microbes. Phylogenetic analyses of 32 small subunit (SSU) 16S-like rRNA gene sequences from different micorbes indicated high …

West Florida Shelf Response To Upwelling Favorable Wind Forcing: Kinematics, Zhenjiang Li, Robert H. Weisberg

Marine Science Faculty Publications

The barotropic responses of the west Florida continental shelf to idealized upwelling favorable alongshore and offshore wind stresses are studied using the three-dimensional, time-dependent, primitive equation Princeton Ocean Model (POM). When forced with uniform winds, the shelf circulation evolves quickly to a quasi steady state. A southeastward alongshore wind lowers sea level along the coast and drives a southeastward coastal jet with a relatively weak northwestward return flow farther offshore. A southwestward offshore wind lowers sea level along the west Florida coast and raises sea level along the Panhandle coast. Two independent circulation gyres are set up in association with …

Local Data Assimilation In The Estimation Of Barotropic And Baroclinic Open Boundary Conditions, Igor Shulman, James K. Lewis, John G. Mayer

Faculty Publications

The problem of data assimilation in the specification of open boundary conditions for limited area models is addressed in this paper. Optimization approaches are detailed, which are based on combining available data on an open boundary with the physics of the hydrodynamical model. In our case the physics is in terms of the flux of energy through the open boundary. These optimized boundary conditions, for both barotropic and baroclinic situations, interpreted physically as special Linearizations of the Bernoulli equation for each normal mode. Because of the complexity of decomposing variables into normal modes for open boundaries with varying bathymetry, we …

A Probabilistic Model For Predicting Polycyclic Aromatic Hydrocarbon (Pah) Bioavailability To American Oysters (Crassostrea Virginia) Inhabiting South Carolina Estuarine Environments, Richard E. Thompson

MUSC Theses and Dissertations

The first part of this dissertation presents an analysis of polycyclic aromatic hydrocarbon (PAH) sediment and oyster contamination data collected at Murrells Inlet, South Carolina. Chapters 2 and 3 present distribution analyses of the sediment and oyster contamination data using three representative PAH analytes: phenanthrene (PHE), pyrene (PYR), and chrysene (CRY). The results indicate that the Weibull gives an adequate fit for almost all the PAH analytes considered. In fact, the Weibull almost always provides a better fit to the data than the lognormal distribution. Chapter 3 also addresses issues associated with non-detection points, as they are regularly encountered in …

Adaptive Strategies That Reduce Predation On Caribbean Spiny Lobster Postlarvae During Onshore Transport, Charles A. Acosta, Mark J. Butler Iv

Biological Sciences Faculty Publications

Like many marine species with meroplanktonic larvae, the Caribbean spiny lobster (Panulirus argus) has a postlarval stage that moves from the oceanic plankton to inshore nurseries only under specific environmental conditions (i.e., at night, in the surface water layer, on the flood tide, and during new moon), presumably to avoid predation or to enhance onshore transport. Using held and mesocosm experiments, we compared predation on planktonic postlarvae swimming at night near the surface and bottom over coastal habitats along typical offshore-inshore transport paths and determined whether predation rates differed between lunar periods (new moon vs, full moon) and with prey …

Simulation Of Carbon-Nitrogen Cycling During Spring Upwelling In The Cariaco Basin, John J. Walsh, Dwight A. Dieterle, Frank E. Muller-Karger, Richard Bohrer, W. Paul Bissett, Ramon J. Varela, Ruben Aparicio, Rafael Diaz, Robert Thunell, Gordon T. Taylor, Mary I. Scranton, Kent A. Fanning, Edward T. Peltzer

Marine Science Faculty Publications

Coupled biological-physical models of carbon-nitrogen cycling by phytoplankton, zooplankton, and bacteria assess the impacts of nitrogen fixation and upwelled nitrate during new production within the shelf environs of the Cariaco Basin. During spring upwelling in response to a mean wind forcing of 8 m s(-1), the physical model matches remote-sensing and hydrographic estimates of surface temperature. Within the three-dimensional flow field, the steady solutions of the biological model of a simple food web of diatoms, adult calanoid copepods, and ammonifying/nitrifying bacteria approximate within similar to 9% the mean spring observations of settling fluxes caught by a sediment trap at similar …

Spring 1999, Nsu Oceanographic Center

Currents

No abstract provided.

Particle Trajectories In An Indian Ocean Model And Sensitivity To Seasonal Forcing, Meredith A. Haines, Rana A. Fine, Mark E. Luther, Zaihua Ji

Marine Science Faculty Publications

Trajectory experiments in a thermocline layer of an Indian Ocean model are used to investigate the role of different meridional transport mechanisms and quantify spreading pathways and rates under different forcing. Particles are introduced along two boundaries: the south Indian Ocean at 30 degrees S and the Indonesian Throughflow. Particles are advected horizontally within the layer by archived model velocity fields (1/3 degrees X 1/3 degrees resolution) for a period of 50 years. The velocity fields are the result of forcing the model by monthly mean climatology (case A). The distribution of particles within the Tropics suggests efficient ater mass …

Semianalytic Moderate-Resolution Imaging Spectrometer Algorithms For Chlorophyll A And Absorption With Bio-Optical Domains Based On Nitrate-Depletion Temperatures, Kendall L. Carder, F. R. Chen, Z. P. Lee, S. K. Hawes, D. Kamykowski

Marine Science Faculty Publications

This paper describes algorithms for retrieval of chlorophyll a concentration and phytoplankton and gelbstoff absorption coefficients for the Moderate-Resolution Imaging Spectrometer (MODIS) or sensors with similar spectral channels. The algorithms are based on a semianalytical, bio-optical model of remote sensing reflectance, R_rs([lambda]). The R_rs([lambda]) model has two free variables, the absorption coefficient due to phytoplankton at 675 nn, a_[Phi](675), and the absorption coefficient due to gelbstoff at 400 nm, a_g(400). The R_rs model has several parameters that are fixed or can be specified based on the region and season of the …

Western Pacific Interannual Variability Associated With The El Niño‐Southern Oscillation, Chunzai Wang, Robert H. Weisberg, Jyotika I. Virmani

Marine Science Faculty Publications

Observations of sea surface temperature (SST), sea level pressure (SLP), surface wind, and outgoing longwave radiation (OLR) show that the El Niño‐Southern Oscillation (ENSO) displays western Pacific anomaly patterns in addition to eastern Pacific anomaly patterns. During the warm phase of ENSO, warm SST and low SLP anomalies in the equatorial eastern Pacific and low OLR anomalies in the equatorial central Pacific are accompanied by cold SST and high SLP anomalies in the off‐equatorial western Pacific and high OLR anomalies in the off‐equatorial far western Pacific. Also, while the zonal wind anomalies over the equatorial central Pacific are westerly, those …

Response Of The West Florida Shelf Circulation To Climatological Wind Stress Forcing, Huijun Yang, Robert H. Weisberg

Marine Science Faculty Publications

The response of the west Florida: continental shelf circulation to monthly mean climatological wind forcing is investigated by using the three-dimensional, primitive equation Princeton Ocean Model. Two basic seasonal patterns of circulation and sea surface elevation occur under a barotropic setting: A winter pattern from October to March and a summer pattern from April to September. An interesting finding in winter is an anticyclonic gyre over the northeastern (Florida Big Bend) region that merges with a northwestward flow from the south. The Big Bend Gyre is caused by a convergence of two separate flows: A nearshore along-shelf southeastward flow and …

Particle Fluxes During Austral Spring And Summer In The Southern Ross Sea, Antarctica, Vernon L. Asper, Walker O. Smith Jr.

Faculty Publications

The flux of particles from the euphotic zone through 200 m was investigated on the Ross Sea continental shelf during two cruises, the first in November-December 1994 and the second in December 1995 and January 1996. An assessment of surface layer phytoplankton biomass and productivity was made simultaneously. Particle flux was measured using floating sediment traps whose collection efficiency was assessed rigorously. Phytoplankton biomass and productivity increased rapidly in November-December, and biomass was maximal in mid-December. Thereafter productivity appeared to decline substantially. Biomass declined as well, but mot as rapidly as productivity. Vertical flux rates were low early in the …

Number 38 (March 1999), Southern Fishes Council

Southeastern Fishes Council Proceedings

(March 1999) - Retention of passive integrated transponder (PIT) tags for individual identification of warmwater stream fishes. By Carol E. Johnston and Elizabeth B. Smithson

Laboratory observations of spawning behavior in two species of snubnose darters, Etheostoma colorosum and E. tallapoosae. By Carol E. Johnston, Nathan A. Farnau, Henry L. Bart and Amanda K. Howard

Minutes, Business Meeting, 24th Annual Meeting, Southeastern Fishes Council

Regional Southeastern Fishes Council Reports News Notes

News And Notes, Southeastern Fishes Council

Southeastern Fishes Council Proceedings

No abstract provided.

Retention Of Passive Integrated Transponder (Pit) Tags For Individual Identification Of Warmwater Stream Fishes, Carol E. Johnston, Elizabeth B. Smithson

Southeastern Fishes Council Proceedings

No abstract provided.

Laboratory Observations Of Spawning Behavior In Two Species Of Snubnose Darters, Etheostoma Colorosum And E. Tallapoosae, Carol E. Johnston, Nathan A. Farnau, Henry L. Bart, Amanda K. Howard

Southeastern Fishes Council Proceedings

No abstract provided.

Front Matter, Southeastern Fishes Council

Southeastern Fishes Council Proceedings

No abstract provided.

Minutes, Business Meeting, Southeastern Fishes Council

Southeastern Fishes Council Proceedings

No abstract provided.

Regional Southeastern Fishes Council Reports, Southeastern Fishes Council

Southeastern Fishes Council Proceedings

No abstract provided.

Orbitally-Tuned Sr Isotope Chemostratigraphy For The Late Middle To Late Miocene, E. E. Martin, N. J. Shackleton, J. C. Zachos, Benjamin P. Flower

Marine Science Faculty Publications

We present a Sr chemostratigraphic reference section for the late middle to late Miocene (14-5 Ma) from Ocean Drilling Program site 926 on the Ceara Rise. This site combines a precise, orbitally tuned timescale with a high sedimentation rate (15 m/m.y.), continuous deposition, and excellent biostratigraphic control. The Sr isotope curve is based on measurements of cleaned, planktonic foraminifera at 100-200 kyr sample intervals and it illustrates periods of rapid change in Sr-87/Sr-86 alternating with periods of little change. Chemostratigraphically-defined ages for these intervals can be determined within +/-0.8 m.y. and +/-1.6 m.y, respectively. There is excellent correlation with the …

Skeletal Architecture And Density Banding Analysis Technique For Diploria Strigosa By X-Ray Computed Tomography, Kevin P. Helmle, Richard E. Dodge (Editor)

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Coral skeletal density information is a useful growth parameter and may be coupled with extension rates to determine calcification rates. The conventional process for density determination is often cumbersome and requires some parameters which are difficult to precisely specify (e.g., Mass absorption coefficients). We have developed a technique and windows based computer program which enables the rapid collection of coral density data. The coral skeleton slab is xradiographed with an aluminum wedge. Thickness and density of the aluminum wedge, thickness of the coral slab, density of pure coral aragonite, and digitized images of the coral and wedge x-radiographs provide necessary …

Myth And Reality Of The Alleged Blind Cave Fish From Pennsylvania, Aldemaro Romero Jr.

Publications and Research

No abstract provided.

Winter 1999, Nsu Oceanographic Center

Currents

No abstract provided.

Results In The Development Of A Macroinvertebrate Index For The Ohio River, Matthew S. Wooten

Theses, Dissertations and Capstones

Aquatic macroinvertebrates are utilized widely as indicators of water quality. Many indices are in use today that provide a means of applying a numeric value to the water quality of a particular stream. However, these indices have been designed for use on small streams and creeks. The primary objective of this study was to lay a foundation for the development of a marcroinvertebrate index to be used on the Ohio River. Secondarily, this study examined for longitudinal trends, trends in correlation with effluent location and the determination of least impacted or reference conditions on the Ohio River. Regression correlation analysis …

Epi-And Mesopelagic Fishes, Acoustic Data, And Sst Images Collected Off Lanzarote, Fuerteventura, And Gran Canaria, Canary Islands, During Cruise "La Bocaina 04-97", F. Bordes, F. Uiblein, R. Castillo, A. Barrera, J. J. Castro, J. Coca, J. Gomez, K. Hansen, V. Hernandez, N. Merrett, M. Miya, T. Moreno, F. Perez, A. Ramos, Tracey Sutton, M. Yamaguchi

Marine & Environmental Sciences Faculty Reports

During cruise "La Bocaina 0497" a series of 14 tows with a commercial pelagic trawl at depths between 20 and 700 m and an acoustic survey with a SIMRAD EK-500 echosounder were carried out in neritic and adjacent oceanic waters off Lanzarote, Fuerteventura, and Gran Canaria, Canary islands. In addition, SST images were obtained to get some informations on the prevailing hydrological conditions in the study area.

Of the 14 trawl tows ten were successful and resulted in capture of a total of 2166 fishes belonging to 81 species, 53 genera and 28 families. Ten species proved to be new …

Sea Turtle Conservation Program, Broward County, Fl 1999 Report, Curtis M. Burney, William E. Margolis

Marine & Environmental Sciences Faculty Reports

No abstract provided.

Effect Of Hypoxia On The Respiratory Burst And Associated Bactericidal Activity In The Pronephritic Cells Of The Mummichog, Fundulus Heteroclitus, Kimberly Ann Boleza

MUSC Theses and Dissertations

Estuaries provide habitat and spawning grounds for numerous species of plants, birds, fish and shellfish. Levels of dissolved oxygen, carbon dioxide and pH in estuarine waters vary with diurnal, tidal and seasonal cycles. Anthropogenic factors may further exacerbate these variations in water quality. The studies presented here tested the hypothesis that hypoxia, including hypercapnia and acidosis, suppresses antibacterial defenses provided by phagocytic cells. The respiratory burst of phagocytic cells was stimulated with zymosan and Vibrio parahaemolyticus to produce Reactive Oxygen Species (ROS) which are potent antibacterial agents. The respiratory burst is oxygen dependent and therefore may be inhibited by hypoxic …

Ion Transport Processes Of Crustacean Epithelial Cells, Gregory A. Ahearn, Jeff Duerr, Zhenpeng Zhuang, Richard J. Brown, Amy Aslamkhan, Deirdre A. Killebrew

Faculty Publications - Department of Biological & Molecular Science

Epithelial cells of the gut, antennal glands, integument, and gills of crustaceans regulate the movements of ions into and across these structures and thereby influence the concentrations of ions in the hemolymph. Specific transport proteins serving cations and anions are found on apical and basolateral cell membranes of epithelia in these tissues. In recent years, a considerable research effort has been directed at elucidating their physiological and molecular properties and relating these characteristics to the overall biology of the organisms. Efforts to describe ion transport in crustaceans have focused on the membrane transfer properties of Na1/H1 exchange, calcium uptake as …

A Biogeochemical Comparison Of Fossil (Carboniferous) And Modern Crustose Red Algae, Michael A. Kruge, John E. Utgaard, William Ferry

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

The nature of the contribution of the various types of algae to sedimentary organic matter continues to be a topic of research interest. Crustose red algae have however received less attention than other types. The fossil calcareous red algae (Rhodophyta) analyzed in this study are two relatively unrecrystallized specimens of Parachaetetes (Family Solenoporacea) from the lower part of the Ste. Genevieve Formation (Carboniferous, Visean) in Union County, Illinois, USA. They occurred in the patch reef phase of a small carbonate mudmound-patchreef. The three modern specimens (collected and identified by F. Collier) are the crustose algae Lithothamnion, Clathromorphum and Phymatolithon …

Gordon Pennington Gunter, 1909-1998, W. David Burke

Gulf and Caribbean Research

Memorial of Gordon Gunter, former director of the Gulf Coast Research Laboratory and the first editor of Gulf Research Reports.