Marine Biology Commons^™

Characterization Of The Early Development And Quality Of Red Snapper (Lutjanus Campechanus) Eggs And Larvae In Aquaculture Conditions, Agnès Bardon Albaret

Dissertations

The quality of red snapper Lutjanus campechanus eggs is highly variable and unpredictable in aquaculture, leading to high mortality during early larval rearing. In this work, the viability of red snapper eggs was investigated from fertilization until larvae expired due to exhaustion of vitellin reserves. The studied spawns were obtained via strip spawning wild-caught (n=17) and captive (n=7) females following hormonal induction. The fertilization rate, the hatch rate, and the duration of survival of unfed larvae post hatch were weakly correlated to each other, revealing occurrence of distinct and independent components of egg quality.

Spawns from captive females were characterized …

Clarification Of The Systematics Of The Haploporoidea (Trematoda) With Descriptions Of New Genera And Species, Michael Jay Andres

Dissertations

The superfamily Haploporoidea Nicoll, 1914 comprises two families, the Atractotrematidae Yamaguti, 1939 and the Haploporidae Nicoll, 1914, and the subfamily Cadenatellinae Gibson et Bray, 1982. All members are parasites of the alimentary tract or gall bladder of marine, estuarine, and freshwater herbivorous fishes. Overstreet and Curran (2005a) provided a review of the Haploporidae and recognized four subfamilies, the Chalcinotrematinae Overstreet et Curran, 2005, Haploporinae Nicoll, 1914, Megasoleninae Manter, 1935, and Waretrematinae Srivastava, 1937. In a series of five publications, Blasco-Costa et al. (2009a-e) revised the Haploporinae and erected a fifth subfamily, the Forticulcitinae Blasco-Costa, Balbuena, Kostadinova, et Olson, 2009. The …

Fungal Contribution To Carbon And Nutrient Cycling In A Subtropical Freshwater Marsh, Rong Su

Dissertations

Despite the well-known occurrence of emergent standing litter in freshwater marshes, very little quantitative data is available concerning the functional role and contribution of fungal decomposers to litter decomposition or their impact on ecosystem scale carbon and nutrient cycling. In the present study, microbial respiration and seasonal biomass and production rates of fungal decomposers associated with standing plant litter were examined to assess the quantitative contribution of fungi to both fine scale litter decay processes and large-scale ecosystem carbon flow pathways in a subtropical Typha domingensis and mixed Cladium jamaicense/Juncus roemarianus freshwater marsh, respectively. In addition, the growth …

Molecular Characterization Of Two Opecoelid Trematodes From Fishes In The Gulf Of Mexico, With A Desceiption Of A New Species Of Helicometra, Michael J. Andres, Candis L. Ray, Eric E. Pulis, Stephen S. Curran, Robin M. Overstreet

Faculty Publications

The plagioporine opecoelids Helicometra fasciata (Rudolphi, 1819) Odhner, 1902, and Macvicaria crassigula (Linton, 1910) Bartoli, Bray, and Gibson, 1989 have been reported from fishes in expansive geographic regions, disjointed from their type localities. New material of M. crassigula was collected from near its type locality as well as specimens resembling Helicometra fasciata sensu lato from three triglids in the Gulf of Mexico. Comparisons of the ribosomal DNA (rDNA) sequences, comprising the partial 18S rDNA, internal transcribed spacer region (= ITS1, 5.8S, and ITS2), and partial 28S rDNA gene, from M. crassigula and Helicometra fasciata sensu lato in the Gulf of …

The Ontogeny Of Whistle Production In Infant Atlantic Bottlenose Dolphins (Tursiops Truncatus) During The First Thirty Days Of Life, Brittany Leigh Jones

Master's Theses

The manner in which dolphin calves acquire their whistle repertoire is largely unknown. This paper focuses on whistle development in four bottlenose dolphin calves during the first thirty days of life in order to increase our understanding of the early emergence of whistles and whistle-like vocalizations. The acoustic parameters of whistle-type vocalizations (i.e., whistles and whistlesquawks) that coincided with a bubblestream emission from the focal calf and/or its mother were analyzed, as were the behavioral states of the mother-calf pair during the emission of such vocals. Mother and calf whistle rates are inversely related, with the mother whistling more often …

Interspecific Variation In Juvenile Snapper Otolith Chemical Signatures In The Northern Gulf Of Mexico, William F. Patterson Iii, Beverly K. Barnett, Michelle Zapp Sluis, James Howan Cowan Jr., Alan M. Shiller

Faculty Publications

The objective of this study was to evaluate whether age-0 lane snapper Lutjanus synagris otolith chemical signatures could serve as accurate proxies for those of its congener, red snapper L. campechanus, among northern Gulf of Mexico (GOM) nursery regions. Red (n = 90) and lane (n = 53) snappers were sampled from 3 regions of the northern GOM in fall 2005, and their otolith chemistry was analyzed with sector field-inductively coupled plasma-mass spectrometry (Ba:Ca, Mg:Ca, Mn:Ca, Sr:Ca, Li:Ca) or stable isotope ratio-mass spectrometry (δ¹³C and δ¹⁸O). Chemical signatures were significantly different among regions (MANOVA, p < 0.001) and between species (MANOVA, p = 0.029), with the species effect being driven by significant differences in 4 of the 7 constituents analyzed (ANOVA, p < 0.036). The significant region effect persisted (MANOVA, p < 0.001), but the species effect was non-significant (MANOVA, p = 0.964) when constituent values were normalized to species-specific means. Mean regional classification accuracies from linear discriminant functions computed with otolith constituent data were 84% for lane snapper and 80% for red snapper whether data were normalized or not. Maximum likelihood models parameterized with normalized lane snapper otolith chemistry data estimated red snapper regional composition reasonably well among mixed-region samples (mean error = 9.7% among models). Therefore, it appears age-0 lane snapper otolith chemical signatures can serve as accurate proxies for those of red snapper in the northern GOM. These results have broader implications for deriving natural tags based on otolith chemistry for fishes that may have low abundance in parts of their range.

The Delivery, Speciation, And Fate Of Trace Elements In St. Louis Bay, Mississippi, Gopal Bera

Dissertations

Estuaries are dynamic regions in which there can be significant modification of the riverine flux of trace elements to the open ocean due to various geochemical, physical, and biological processes. Additionally, estuaries are often subject to anthropogenic inputs of trace elements. The first portion of this study investigated the source, behavior, and sediment interaction of anthropogenic stable cesium (Cs) in St. Louis Bay (SLB), MS. A consistent increase in stable Cs concentration was noticed in sediment cores starting from a period when a titanium dioxide refinery on SLB started operations. Weak correlation between Cs and clay percentage and strong correlations …

Biogeochemistry Of Trace Elements In The Mixing Zone Of The Mississippi And Atchafalaya Rivers And Chemical Distributions As Affected By The Deepwater Horizon Blowout, Dongjoo Joung

Dissertations

Selected trace elements (TEs), dissolved organic carbon, and nutrients were studied in Louisiana Shelf waters including the Mississippi (MR) and Atchafalaya (AR) River plumes during periods of high, intermediate, and low river discharges. Seasonal variations in TEs were observed at low salinity, reflecting seasonal changes in the river water endmembers. Shelf surface water dissolved Mo, Cs, U, Ni, and Cu showed conservative behavior with minor scattering in some high salinity waters. Based on associated mixing experiments, nutrient and chlorophyll distributions, as well as surface-bottom concentration contrasts, the non-conservative behavior of TEs was variously related to colloidal flocculation (Fe, Cr), biological …

Resident Benthic Fishes Of Artificial Reefs In The Mississippi Sound: Effects Of Habitat Relief And Subregion, Claire Louise Matten

Master's Theses

One of the fundamental questions of artificial reef research concerns the capability of these manmade structures to promote secondary production. Many researchers have questioned whether artificial reefs increase the production of fish biomass, or simply aggregate existing fish biomass. Most previous research has focused on production of transient fish biomass, because of the high recreational and commercial value of these species. Establishing a link between transient fish production and artificial reef primary and secondary production has proved difficult. Therefore, the goal of this study was to examine the productivity of benthic fishes resident to artificial reefs in the Mississippi Sound, …

Taxonomy, Diversity, And Distribution Patterns Of Portunid Crab Megalopae In The Northern Gulf Of Mexico During Fall Of 2003, Carley Rain Knight

Master's Theses

The field of zooplankton biology contributes to more accurate stock assessments as well as to a greater understanding of the marine food web. However, adequate information for the invertebrate component of zooplankton is lacking compared to the ichthyoplankton component. In this thesis, identification of Portunidae (Crustacea: Decapoda) megalopae collected during the fall of 2003 from a NOAA SEAMAP cruise revealed 7 species and 11 morphs with 90% of the total density comprised of Callinectes sapidus, Achelous gibbesii, Callinectes similis, Achelous spinicarpus, and Achelous sp.I. Keys and detailed descriptions are provided along with photographs and morphological drawings for each morph to …

Concentrations And Sources Of Polycyclic Aromatic Hydrocarbons In Surface Coastal Sediments Of The Northern Gulf Of Mexico, Zucheng Wang, Zhanfei Liu, Kehui Xu, Lawrence M. Mayer, Zulin Zhang, Alexander S. Kolker, Wei Wu

Faculty Publications

Background: Coastal sediments in the northern Gulf of Mexico have a high potential of being contaminated by petroleum hydrocarbons, such as polycyclic aromatic hydrocarbons (PAHs), due to extensive petroleum exploration and transportation activities. In this study we evaluated the spatial distribution and contamination sources of PAHs, as well as the bioavailable fraction in the bulk PAH pool, in surface marsh and shelf sediments (top 5 cm) of the northern Gulf of Mexico. Results: PAH concentrations in this region ranged from 100 to 856 ng g(-1), with the highest concentrations in Mississippi River mouth sediments followed by marsh sediments and then …

Assessing Respiration Rates And Nutrient Dynamics Of Aritifical Reef Biofilms And Bacterioplankton In The Mississippi Sound, Lynn Elizabeth Wilking

Master's Theses

Artificial reefs are primarily used to provide a suitable habitat for target fish populations, but the structures can also improve water quality and benefit non-target organisms. Laboratory incubation experiments were conducted in the presence of biofilm on rubble and in its absence to examine bacterial growth, community respiration, and nutrient dynamics at four artificial reef habitats in the Mississippi Sound. Biofilm samples were also collected from settlement plates deployed at each site and were analyzed for 813C and 81sN stable isotope content. Respiration rates were always higher in the presence of biofilm but bacterial abundance often declined over time, and …

Age, Growth, Mortality, And The Effects Of Trawling On Mortality Of The Longspine Porgy, Stenotomus Caprinus, Cher Marie Newman

Master's Theses

Stenotomus caprinus (Longspine Porgy) is one of the most abundant bycatch species caught in trawl fisheries in the northern Gulf of Mexico (GOM). Biological data of length, weight, and abundance have been collected since 1972 on the Southeast Area Monitoring and Assessment Program (SEAMAP) surveys with a variety of GOM species, including Longspine Porgy, using trawl nets during groundfish surveys. In 2010-2011 five Longspine Porgy were obtained from Groundfish and Pelagic surveys at each station for further analysis. Age distribution was determined through von Bertalanffy length and weight-age models. The samples were separated into two regions of the GOM to …

Penetration Of Uv-Visible Solar Radiation In The Global Oceans: Insights From Ocean Color Remote Sensing, Zhongping Lee, Chuanmin Hu, Shaoling Shang, Keping Du, Marlon Lewis, Robert Arnone, Robert Brewin

Faculty Publications

Penetration of solar radiation in the ocean is determined by the attenuation coefficient (K-d()). Following radiative transfer theory, K-d is a function of angular distribution of incident light and water's absorption and backscattering coefficients. Because these optical products are now generated routinely from satellite measurements, it is logical to evolve the empirical K-d to a semianalytical K-d that is not only spectrally flexible, but also the sun-angle effect is accounted for explicitly. Here, the semianalytical model developed in Lee et al. (2005b) is revised to account for the shift of phase function between molecular and particulate scattering from the short …

Jellyfish Body Plans Provide Allometric Advantages Beyond Low Carbon Content, Kylie A. Pitt, Carlos M. Duarte, Cathy H. Lucas, Kelly R. Sutherland, Robert H. Condon, Hermes Mianzan, Jennifer E. Purcell, Kelly L. Robinson, Shin-Ichi Uye

Faculty Publications

Jellyfish form spectacular blooms throughout the world's oceans. Jellyfish body plans are characterised by high water and low carbon contents which enables them to grow much larger than non-gelatinous animals of equivalent carbon content and to deviate from non-gelatinous pelagic animals when incorporated into allometric relationships. Jellyfish have, however, been argued to conform to allometric relationships when carbon content is used as the metric for comparison. Here we test the hypothesis that differences in allometric relationships for several key functional parameters remain for jellyfish even after their body sizes are scaled to their carbon content. Data on carbon and nitrogen …

Development Of A Genetic Monitoring Program For Stock Enhancement Of Mississippi Spotted Seatrout (Cynoscion Nebulosus), Carly Renee Somerset

Master's Theses

The spotted seatrout is a coastal sciaenid fish that is intensively exploited in the northcentral Gulf of Mexico. A stock enhancement research program was initiated in 2004 to develop methods to culture juveniles and release them in natural habitats to increase recruitment in the fishery. The goal of this study was to initiate a genetic monitoring program for stock enhancement activities. Assays for 15 microsatellite loci were optimized. Simulations indicated that this panel of molecular markers was sufficient to identify recaptured hatchery fish with high confidence assuming genetic data on broodfish spawned to produce released fish were available. Stock structure …

Habitat Characterization, Habitat Use And Associated Growth Of Juvenile Spotted Seatrout (Cynoscion Nebulosus) In A Mississippi Bay System: Implications For Stock Enhancement Practices, Joseph Read Hendon

Dissertations

The spotted seatrout (Cynoscion nebulosus) is the most targeted recreational fishery species in Mississippi coastal waters. Consequently, the Seatrout Population Enhancement Cooperative stock enhancement program was initiated to investigate methods for supplementing this heavily exploited population. Given ecological data needs for both wild and hatchery-reared (HR) juveniles of the species, habitat mapping, directed sampling and a caging study were conducted. Submerged aquatic vegetation (SAV), oyster shell and non-vegetated substrates were mapped at water depths < 2 m in Point aux Chenes Bay, Mississippi, using a sidescan sonar, which provided more accurate estimations of habitat coverage, particularly for SAV, compared to point-based sampling. Applying habitat strata delineated from sidescan mapping, late-juvenile spotted seatrout [125 - 275 mm total length (TL)] were sampled in SAV, marsh-edge and non-vegetated habitats as part of a seasonal gill net survey conducted in 2011 and 2012. Spotted seatrout ranging from 138 to 485 mm TL were collected using a smallmesh gill net, and 65% of collected individuals fell within the targeted late-juvenile size range. Overall mean catch-per-unit-effort of C. nebulosus did not differ for abundance or biomass between years, but both metrics were significantly higher in SAV habitats. Employing cage enclosures that …

Community Metrics And Trophic Dynamics In Tidal Creeks In An Anthropogenically Fragmented, Coastal Landscape, Michael Robert Lowe

Dissertations

Salt marsh landscapes are among the most anthropogenically altered ecosystems in the world. Urbanization (i.e., accumulation of impervious cover and man made structrues) of the coastal landscape can disrupt the delivery of numerous ecosystem services. Among the many services provided by salt marsh habitats, they serves as the primary habitats for distinct macroinfauna (i.e., benthic and epibenthic macrofauna) and nekton (i.e., fish and decapod crustaceans) assemblages. In this dissertation, I used a number of metrics to test the overarching hypothesis that coastal urbanization has negative consequences for salt marsh faunal assemblages. Chapter I uses a landscape ecology approach to show …

Evaluation Of Human Fecal Pollution In Mississippi Coastal And Creek Waters Using Library Independent Markers, Christopher John Flood

Dissertations

The objective of this study was to determine whether statistically valid correlations could be elucidated between standard indicator bacteria (enterococci and fecal coliforms) from coastal creek and marine samples and the presence of four library independent molecular markers that are human or sewage specific. Eight hundred and nineteen samples were collected between August 2007 and July 2010 to determine enterococcal and fecal coliform counts and the presence of genetic markers for sewage indicator organisms Methanobrevibacter smithii, human specific Bacteroides sp., Bacteroides thetaiotaomicron, and Fecalibacterium sp. During the course of this study environmental parameters were measured and statistically analyzed to determine …

Accessing Learning In The Adult Zebrafish With A Novel Associative Learning Task, David Joseph Jouandot Ii

Dissertations

The zebrafish (Danio rerio) is accepted in the developmental and genomic communities as a model organism. However, the capacity for the zebrafish as a behavioral model has yet to be fully acknowledged. The research presented provides evidence validating the novel task, aids in gaining a better understanding of the learning processes, and identifies individual differences. The novel associative learning task differs from any present well established behavioral model and lends itself to future development. The task provides the zebrafish community with a high output behavioral task which is readily replicated and allows one researcher to test between eight …

Tactile Behavior In A Group Of Captive Rough-Toothed Dolphins As A Function Of Opportunities To Play With Objects, Kelly Ann Caffery

Dissertations

Cetaceans live in complex physical and social environments that are frequently changing. In contrast, the captive environment for marine mammals is often lacking in stimulation. As a result, enrichment is often used to increase species-typical behaviors and enhance the well-being of the animals. The purpose of this study was to compare the effects of enrichment objects on the social behavior of a group of seven captive rough-toothed dolphins (Steno bredanensis). Observations of this species in the wild suggest it may have a particular affinity for tactile and object play behaviors. Therefore, these behavior categories were a primary focus …

Phytoplankton Community Distribution And Light Absorption Properties In The Northern Gulf Of Mexico, Sumit Chakraborty

Dissertations

The theme of this dissertation was to understand the spatio-temporal dynamics of the phytoplankton community, its light absorption properties, and its relationship to underlying physicochemical processes. Understanding these phenomena will benefit efforts to predict pathways of carbon transformation in the ocean, to estimate primary productivity (PP) and to characterize distributions of phytoplankton communities using ocean color remote sensing.

This research entailed four different studies, which address different objectives. The first two studies dealt with phytoplankton community composition and its relationship to environmental variables. A chemotaxonomic approach was used, which was successful in revealing distinct phytoplankton assemblages in distinct water mass …

Diel Vertical Movements Of A Scalloped Hammerhead, Sphyrna Lewini, In The Northern Gulf Of Mexico, Eric R. Hoffmayer, James S. Franks, William B. Driggers, Paul W. Howey

Faculty Publications

Despite the circumglobal distribution of scalloped hammerheads, Sphyrna lewini (Griffith and Smith, 1834), little information is available regarding fine-scale movement and habitat use patterns for this species. Over a 27-d period, data were collected on diel habitat use and environmental preferences of a 240 cm (total length) female S. lewini. The shark exhibited a consistent and repeated diel vertical movement pattern, making more than 76 deep nighttime dives; the maximum depth reached was 964 m, where the temperature was 5.8 degrees C. The purpose of the nightly oscillatory deep diving pattern is unknown but could possibly represent feeding behavior. These …

Quantifying Intrapopulation Variability In Stable Isotope Data For Spotted Seatrout (Cynoscion Nebulosus), Richard S. Fulford, Kevin Dillon

Faculty Publications

Stable isotope (SI) values of carbon (delta C-13) and nitrogen (delta N-15) are useful for determining the trophic connectivity between species within an ecosystem, but interpretation of these data involves important assumptions about sources of intrapopulation variability. We compared intrapopulation variability in delta C-13 and delta N-15 for an estuarine omnivore, Spotted Seatrout (Cynoscion nebulosus), to test assumptions and assess the utility of SI analysis for delineation of the connectivity of this species with other species in estuarine food webs. Both delta C-13 and delta N-15 values showed patterns of enrichment in fish caught from coastal to offshore sites and …

Covariance Localization With The Diffusion-Based Correlation Models, Max Yaremchuk, Dmitry A. Nechaev

Faculty Publications

Improving the performance of ensemble filters applied to models with many state variables requires regularization of the covariance estimates by localizing the impact of observations on state variables. A covariance localization technique based on modeling of the sample covariance with polynomial functions of the diffusion operator (DL method) is presented. Performance of the technique is compared with the non-adaptive (NAL) and adaptive (AL) ensemble localization schemes in the framework of numerical experiments with synthetic covariance matrices in a realistically inhomogeneous setting. It is shown that the DL approach is comparable in accuracy with the AL method when the ensemble size …

Notes On The Biology Of Invasive Lionfish (Pterois Sp.) From The Northcentral Gulf Of Mexico, Nancy J. Brown-Peterson, J. Read Hendon

Gulf and Caribbean Research

The first confirmed sightings of lionfish in the Gulf of Mexico occurred in 2010 (Schofield 2010), where they were reported in the southern GOM off the Yucatan Peninsula, Mexico (Aguilar-Perera and Tuz-Sulub 2010); in 2012 more than 1,500 lionfish were collected from northern GOM locations ranging from Florida to Texas (Fogg et al. 2013). However, other than visual observations (mostly from recreational divers), there is relatively little information on the biology and ecology of lionfish in the northern GOM. The life history of invasive species can vary as they colonize new habitats and areas (Bøhn et al. 2004); thus, biological …

Sand Bottom Microalgal Production And Benthic Nutrient Fluxes On The Northeastern Gulf Of Mexico Nearshore Shelf, Jeffrey G. Allison, M.E. Wagner, M. Mcallister, A.K.J. Ren, R.A. Snyder

Gulf and Caribbean Research

Benthic microalgal production on the continental shelves may be an important contributor to the overall productivity of offshore ecosystems. We used light and dark benthic chambers to measure in situ production, respiration, and benthic nutrient flux on the nearshore quartzite sands of the northeast Gulf of Mexico shelf. Net exchange of O₂, NH₄⁺, NO₃^- + NO₂^-, PO₄^-3, and SiO₂ was measured in samples taken from chambers at depths of 15 to 16 m offshore of Pensacola, FL. Phytoplankton production and respiration in near-bottom water was determined …

Record Body Size For The Red Lionfish, Pterois Volitans (Scorpaeniformes), In The Southern Gulf Of Mexico, Alfonso Aguilar-Perera, Leidy Perera-Chan, Luis Quijano-Puerto

Gulf and Caribbean Research

Non-native species are those that have been transported, via human actions, from one continent and introduced into another (Lockwood et al. 2007). In the 1980s, red lionfish, Pterois volitans (Linnaeus, 1758), traded in the US aquarium industry from the Pacific Ocean, was introduced into the coral reefs off Florida's coast by aquarium hobbyists (Morris and Whitfield 2009). It is unknown how this introduction occurred, but after more than 20 years the red lionfish population is widespread, occupying a large portion of the Western Atlantic (Schofield 2010) where it represents a threat to the marine ecosystem (Green et al. 2012). The …

Time-Activity Budgets Of Stoplight Parrotfish (Scaridae: Sparisoma Viride) In Belize: Cleaning Invitation And Diurnal Patterns, Wesley A. Dent, Gary R. Gaston

Gulf and Caribbean Research

The primary objective of this study was to analyze diurnal behavior of Sparisoma viride in South Water Caye Marine Reserve (SWCMR), Belize. Time-activity budgets were used to characterize behavior (using swimming, feeding, hovering, sheltering, defecating, and cleaning categories) during the diel cycle, and to illustrate differences among the life phases of this species.

Distribution And Length Frequency Of Invasive Lionfish (Pterois Sp.) In The Northern Gulf Of Mexico, Alexander Q. Fogg, Eric R. Hoffmayer, William B. Driggers Iii, Matthew D. Campbell, Gilmore J. Pellegrin, William Stein

Gulf and Caribbean Research

The purpose of this communication is to document continued spatial expansion of lionfish farther west into the northern Gulf of Mexico. Furthermore, we provide the first length— mass relationships and length frequency information for lionfishes captured within the northern GOM based on data collected as part of a broader on—going study of lionfish life history in this region.