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Articles 31 - 60 of 198
Full-Text Articles in Marine Biology
Analysis Of A Human-Mediated Microbioinvasion: The Global Spread Of The Benthic Foraminifer Trochammina Hadai Uchio, 1962, Mary Mcgann, Maria Holzmann, Vincent M.P. Bouchet, Sibelle Trevisan Disaró, Patrícia P.B. Eichler, David W. Haig, Stephen J. Himson, Hiroshi Kitazato, Jean Charles Pavard, Irina Polovodova Asteman, André R. Rodrigues, Clément M. Tremblin, Masashi Tsuchiya, Mark Williams, Phoebe O'Brien, Josefin Asplund, Malou Axelsson, Thomas D. Lorenson
Analysis Of A Human-Mediated Microbioinvasion: The Global Spread Of The Benthic Foraminifer Trochammina Hadai Uchio, 1962, Mary Mcgann, Maria Holzmann, Vincent M.P. Bouchet, Sibelle Trevisan Disaró, Patrícia P.B. Eichler, David W. Haig, Stephen J. Himson, Hiroshi Kitazato, Jean Charles Pavard, Irina Polovodova Asteman, André R. Rodrigues, Clément M. Tremblin, Masashi Tsuchiya, Mark Williams, Phoebe O'Brien, Josefin Asplund, Malou Axelsson, Thomas D. Lorenson
Research outputs 2022 to 2026
A non-indigenous species (NIS) of benthic foraminifera was first identified in a core collected in 1993 in San Francisco Bay, California, USA, and subsequently identified as Trochammina hadai Uchio, 1962. Archived samples and literature reviews were used to determine that the species, which is native to Asia, arrived in San Francisco Bay between the early 1960s and 1983. Through molecular analyses of specimens, archived samples and literature reviews from 1930-1983, and site surveys of harbors and estuaries along the western North American seaboard in 1994-2024, in total more than 2500 samples, we documented the presence of T. hadai at 73 …
Shallow Coastal Bays As Sediment Carbon And Nutrient Reservoirs In The Baltic Sea, Betty Gubri, Joakim P. Hansen, Sofia A. Wikström, Martin Snickars, Martin Dahl, Martin Gullström, Emil Rydin, Pere Masqué, Andrius Garbaras, Mats Björk, Christoffer Boström
Shallow Coastal Bays As Sediment Carbon And Nutrient Reservoirs In The Baltic Sea, Betty Gubri, Joakim P. Hansen, Sofia A. Wikström, Martin Snickars, Martin Dahl, Martin Gullström, Emil Rydin, Pere Masqué, Andrius Garbaras, Mats Björk, Christoffer Boström
Research outputs 2022 to 2026
Coastal vegetated ecosystems are being increasingly recognized for their capacity to capture carbon, provide long-term biogenic storage, and alleviate nutrient pollution. To assess the ability of shallow, vegetated coastal bays to function as blue carbon and nutrient (nitrogen and phosphorus) sinks, we collected sediment cores in nine shallow enclosed bays (representative of the EU Habitats 1153 and 1154) in the archipelago areas of Sweden (Stockholm), Åland Island, and southwestern Finland. Our study showed strong uniformity of carbon and nutrient storage, substantial accumulation of carbon and nutrients, and minimal regional differences in carbon, nitrogen, and phosphorus sediment stocks. These findings are …
Insights Into Prey Handling And Feeding Strategies By Ghost Crabs On Sea Turtle Eggs And Hatchlings, Casper Avenant
Insights Into Prey Handling And Feeding Strategies By Ghost Crabs On Sea Turtle Eggs And Hatchlings, Casper Avenant
Research outputs 2022 to 2026
The feeding behaviour on sea turtle eggs and hatchlings by the golden ghost crab Ocypode convexa, a species endemic to the west coast of Australia, was observed in field and laboratory settings using infrared videography. On beaches where ghost crab densities are high, multiple crabs can feed on nests over several nights, often resulting in destruction of clutches. Crabs appear to anticipate the emergence of hatchlings, often congregating near nests in the moments prior to emergence. When feeding on eggs crabs rupture eggshells using the sharp tips of their claws, with tissue subsequently moved to the mouthparts for ingestion using …
Mapping The Voices: Spanish Boat Owners And Marina Operators On Non-Indigenous Marine Species—Knowledge And Key Informants, Gemma Martínez-Laiz, Kaeden Leonard, Chi Thai Uyen Le, Chad Roy Le Hewitt, José Manuel Guerra-García, Carlos Navarro-Barranco, Sara García-Garrido, Marnie L. Campbell
Mapping The Voices: Spanish Boat Owners And Marina Operators On Non-Indigenous Marine Species—Knowledge And Key Informants, Gemma Martínez-Laiz, Kaeden Leonard, Chi Thai Uyen Le, Chad Roy Le Hewitt, José Manuel Guerra-García, Carlos Navarro-Barranco, Sara García-Garrido, Marnie L. Campbell
Research outputs 2022 to 2026
The public need to be aware of non-indigenous species (NIS) and how they spread to effectively manage this marine biosecurity risk. In most countries, the management of biosecurity risks associated with recreational boating relies exclusively on vessel owners and marina managers engaging in pro-environmental behaviours. To understand if this management approach is feasible, stakeholders’ perceptions first need to be identified. Surveys assessed people’s knowledge, awareness about NIS and channels involved in risk communication in three countries with different management scenarios and marine biosecurity histories: Spain, Australia and New Zealand. There was a mismatch between perceived and actual knowledge of NIS …
Ecological Specialisation Of Reef Fishes Peaks In Global Biodiversity Hotspots, Zoé Delecambre, Renato A. Morais, Alexandre C. Siqueira, Emma Paul Costesec, Caroline E. Dubé, Sergio R. Floeter, Alan M. Friedlander, Fabien Leprieur, Yves Letourneur, Lucas T. Nunes, Jordan M. Casey, Valeriano Parravicini
Ecological Specialisation Of Reef Fishes Peaks In Global Biodiversity Hotspots, Zoé Delecambre, Renato A. Morais, Alexandre C. Siqueira, Emma Paul Costesec, Caroline E. Dubé, Sergio R. Floeter, Alan M. Friedlander, Fabien Leprieur, Yves Letourneur, Lucas T. Nunes, Jordan M. Casey, Valeriano Parravicini
Research outputs 2022 to 2026
Aim: The role of ecological specialisation in shaping biogeographic and evolutionary patterns remains unresolved. To date, few studies have quantitatively examined consumer niche breadth at a global scale. We describe global biogeographic and diversification patterns of specialisation, measured using trophic and thermal niches, for a highly diverse assemblage of consumers: reef fishes. First, we investigated the confluence of specialisation with global biogeographic patterns in species richness and reef area. Then, we tested whether these patterns could be explained by differences in diversification rates and geographic ranges. Location: Tropical reefs across the globe. Time Period: Present. Major Taxa Studied: Reef fishes. …
Nitrogen Processes Within Tropical Mangroves In Australia, M. F. Adame, N. Iram, J. N. Gamboa-Cutz, P. Masque
Nitrogen Processes Within Tropical Mangroves In Australia, M. F. Adame, N. Iram, J. N. Gamboa-Cutz, P. Masque
Research outputs 2022 to 2026
Coastal wetlands have long been identified as ecosystems that can ameliorate N inputs into the ocean. The processes associated with N uptake, transformation, and losses are relatively well understood for temperate wetlands; however, information on tropical wetlands is scarce. In this study, we conducted a whole ecosystem approach to measure N processes within tropical mangroves in the Moresby estuary in northeast Australia. We measured N stocks (trees and soils), inputs from sedimentation, fixation, and accumulation as woody biomass, and outputs through denitrification, anammox, and soil respiration (N2O emissions). Potential denitrification was detected along anammox (average, min-max) at 883 (485–1,450) gN …
Recommendations For Strengthening Blue Carbon Science, Martin Dahl, Paul S. Lavery, Inés Mazarrasa, Jimena Samper-Villarreal, Maria F. Adame, Stephen Crooks, Carlos M. Duarte, Daniel A. Friess, Dorte Krause-Jensen, Carmen Leiva-Dueñas, Catherine E. Lovelock, Peter I. Macreadie, Pere Masqué, Miguel Angel Mateo, Oscar Serrano
Recommendations For Strengthening Blue Carbon Science, Martin Dahl, Paul S. Lavery, Inés Mazarrasa, Jimena Samper-Villarreal, Maria F. Adame, Stephen Crooks, Carlos M. Duarte, Daniel A. Friess, Dorte Krause-Jensen, Carmen Leiva-Dueñas, Catherine E. Lovelock, Peter I. Macreadie, Pere Masqué, Miguel Angel Mateo, Oscar Serrano
Research outputs 2022 to 2026
Blue carbon (BC) habitats (e.g., mangroves, tidal marshes, and seagrasses) are important CO2 sinks but are among the most threatened ecosystems on Earth. Substantial research over the last decade has quantified BC to evaluate the climate benefits associated with habitat conservation and restoration. However, the exponential growth in BC science has resulted in differing approaches that hinder comparison across studies and increase uncertainty. Here, we synthesized existing data to depict the range of uncertainty associated to different BC methodologies and argue that cumulative biases linked to multiple methodologies can result in BC estimates differing by up to 10-fold. We identified …
Sparse Seagrass Meadows Are Critical Dugong Habitat: A Novel Rapid Assessment Of Habitat-Wildlife Associations Using Paired Drone And In-Water Surveys, Nicole E. Said, Christophe Cleguer, Paul Lavery, Amanda J. Hodgson, Connor Gorham, Julian A. Tyne, Ankje Frouws, Simone Strydom, Johnny Lo, Holly C. Raudino, Kelly Waples, Kathryn Mcmahon
Sparse Seagrass Meadows Are Critical Dugong Habitat: A Novel Rapid Assessment Of Habitat-Wildlife Associations Using Paired Drone And In-Water Surveys, Nicole E. Said, Christophe Cleguer, Paul Lavery, Amanda J. Hodgson, Connor Gorham, Julian A. Tyne, Ankje Frouws, Simone Strydom, Johnny Lo, Holly C. Raudino, Kelly Waples, Kathryn Mcmahon
Research outputs 2022 to 2026
Understanding the fine-scale behavioural and feeding ecology of marine megafauna is imperative for effective management of their habitat areas; however, obtaining the relevant data can be both costly and challenging. Here we integrate the use of small drones for dugong surveys with underwater benthic habitat assessment techniques at the local spatial scale (∼30 km2), to determine the drivers of dugong (Dugong dugon) distribution across three locations in the Pilbara, Western Australia. Paired assessment data was collected three times over two years. Benthic habitat (percent cover), seagrass nutritional quality and environmental parameters (temperature, water clarity, water current, water depth) were tested …
Accounting For Post-Release Mortality In Data-Limited, Length-Based Assessments For Four Demersal Fish Species With Varying Life Histories, Brett Crisafulli, Sybrand Alexander Hesp, Ebenezer Afrifa-Yamoah, Ute A. Mueller, Karina L. Ryan, David V. Fairclough, Norman G. Hall, Johnny Lo
Accounting For Post-Release Mortality In Data-Limited, Length-Based Assessments For Four Demersal Fish Species With Varying Life Histories, Brett Crisafulli, Sybrand Alexander Hesp, Ebenezer Afrifa-Yamoah, Ute A. Mueller, Karina L. Ryan, David V. Fairclough, Norman G. Hall, Johnny Lo
Research outputs 2022 to 2026
Released (or discarded) fish from recreational and commercial line fisheries can experience significant levels of post-release mortality (PRM), affecting sustainability. Although PRM effects are often considered in data-rich (integrated model) assessments, this is uncommon in data-limited assessments. This study investigates impacts of PRM when applying data-limited, length-based assessment methods for four reef-dwelling demersal fish species in temperate Western Australia (Glaucosoma hebraicum, Chrysophrys auratus, Choerodon rubescens and Epinephelides armatus). These species differ considerably in their biology and susceptibility to PRM. For each species simulations were undertaken to (1) evaluate the reliability of a length-based catch curve (LBCC) method for estimating fishing …
More Than One Way To Be A Planktivore: The Vast Morphospace Of Plankton-Feeding Reef Fishes, Isabelle Ng, David R. Bellwood, Jan M. Strugnell, Sergio R. Floeter, Alexandre C. Siqueira
More Than One Way To Be A Planktivore: The Vast Morphospace Of Plankton-Feeding Reef Fishes, Isabelle Ng, David R. Bellwood, Jan M. Strugnell, Sergio R. Floeter, Alexandre C. Siqueira
Research outputs 2022 to 2026
Planktivorous reef fishes are thought to possess unique morphological traits to feed on small, evasive prey. Despite the multitude of family-level studies addressing this hypothesis, results remain inconclusive. Our goal, therefore, was to determine whether specialised traits and patterns of morphological convergence are congruent across a comprehensive phylogeny of reef-associated fishes. We measured 15 morphological traits from 815 images of 299 species in 12 globally distributed families. Using phylogenetic comparative methods, we mapped the evolution of plankton-feeding across lineages; assessed the effect of planktivory on body shape; and tested for the presence of morphological convergence among planktivores. We demonstrate that …
Cross-Habitat Patterns Of Sediment Transport And Release By Surgeonfishes, Sterling B. Tebbett, David R. Bellwood, James Gahan, Isabelle Ng, Alexandre C. Siqueira
Cross-Habitat Patterns Of Sediment Transport And Release By Surgeonfishes, Sterling B. Tebbett, David R. Bellwood, James Gahan, Isabelle Ng, Alexandre C. Siqueira
Research outputs 2022 to 2026
Building a comprehensive understanding of geo-ecological functions is viewed as a critical step in the quantification of carbonate and sediment budgets on coral reefs. Although parrotfishes are known to play key roles in such functions, the roles of surgeonfishes are less well understood. This is despite surgeonfishes being some of the largest and most abundant, nominally herbivorous fishes on reefs, with the potential to play a major role in sediment dynamics. Here, we quantified the role of four focal surgeonfish species across two functional groups (sediment suckers and brushers) in cross-habitat sediment dynamics by combining data on behavioural observations, fish …
Seagrasses Are Most Vulnerable To Marine Heatwaves In Tropical Zones: Local-Scale And Broad Climatic Zone Variation In Thermal Tolerances, Nicole Said, Chanelle Webster, Simone Strydom, Natasha Dunham, Matthew P. Adams, Kathryn Mcmahon
Seagrasses Are Most Vulnerable To Marine Heatwaves In Tropical Zones: Local-Scale And Broad Climatic Zone Variation In Thermal Tolerances, Nicole Said, Chanelle Webster, Simone Strydom, Natasha Dunham, Matthew P. Adams, Kathryn Mcmahon
Research outputs 2022 to 2026
Under a changing climate, it is imperative that we understand how species may respond to temperature impacts, which can differ among populations of the same species due to local drivers. Thermal tolerance data, which can be used to assess an organism's upper thermal limits, is valuable to identify species and/or populations' susceptibility to thermal stress. This study assessed the variation in thermal tolerance of six seagrass species at both broad latitudinal (c. 500–1000 km) and local scales (c. 25 km). Photosynthesis–temperature curves (15–45°C) were conducted, by measuring oxygen in closed incubation chambers, and thermal optima (Topt) was extracted. We found …
Global Patterns And Drivers Of Seagrass Biomass, Net Primary Production And Meadow Structure, Nicole R. Foster, Enric Gomis, Diana I. Montemayor, Simone Strydom, Miguel Angel Mateo, Eduard Serrano, Aurora M. Ricart, Martin Dahl, Ines Mazarrasa, Paulina Cisternas, Harry Whiteley, Elliott J. Bates, Viena Puigcorbé, Uxue Moreda, Mar Truc, Karina Inostroza, Rafael Huertas, Roisin Mccallum, Anna Lafratta, Chanelle L. Webster, Caitlyn M. O'Dea, Nicole E. Said, Carlos M. Duarte, Paul S. Lavery, Oscar Serrano
Global Patterns And Drivers Of Seagrass Biomass, Net Primary Production And Meadow Structure, Nicole R. Foster, Enric Gomis, Diana I. Montemayor, Simone Strydom, Miguel Angel Mateo, Eduard Serrano, Aurora M. Ricart, Martin Dahl, Ines Mazarrasa, Paulina Cisternas, Harry Whiteley, Elliott J. Bates, Viena Puigcorbé, Uxue Moreda, Mar Truc, Karina Inostroza, Rafael Huertas, Roisin Mccallum, Anna Lafratta, Chanelle L. Webster, Caitlyn M. O'Dea, Nicole E. Said, Carlos M. Duarte, Paul S. Lavery, Oscar Serrano
Research outputs 2022 to 2026
Aim: We decipher global patterns in seagrass growth and structure to advance seagrass science, facilitate multidisciplinary research, and promote effective management strategies and policy development for seagrass habitats. Location: Global. Time period: 1975 to 2024. Major taxa studied: Seagrasses—marine angiosperms. Methods: A global data set on seagrass total biomass, total net primary productivity (NPP), shoot density, and percent cover was compiled across 11 genera. We tested how these variables change across seagrass genera, life-history strategy, and geographic location; and then modelled the environmental drivers (temperature, nutrients, light availability) of the patterns observed. Results: The mean (±SE) total biomass of seagrasses …
Behavioral Responses To Underwater Noise, Christine Erbe, Capri Jolliffe, Renee Schoeman, Valeria Senigaglia, Cristina Tollefsen, Rebecca Wellard, Ann Bowles, Dorian Houser, Shyam Madhusudhana, Sarah A. Marley, Angela Recalde Salas, Chandra Salgado-Kent, Leah Trigg
Behavioral Responses To Underwater Noise, Christine Erbe, Capri Jolliffe, Renee Schoeman, Valeria Senigaglia, Cristina Tollefsen, Rebecca Wellard, Ann Bowles, Dorian Houser, Shyam Madhusudhana, Sarah A. Marley, Angela Recalde Salas, Chandra Salgado-Kent, Leah Trigg
Research outputs 2022 to 2026
This chapter presents an overview of physical and acoustic behavioral responses of marine mammals to underwater sounds. A literature review was undertaken, and data on received levels at the animal when certain types of responses were observed were compiled in an online supplementary spreadsheet. Based on this, an overview of responses was written, organized first by species and then by sound type. In-air and underwater sound sources were considered. The most studied sound types were mid-frequency sonar and acoustic deterrent devices and then impact pile driving and vessels. The most frequently reported response was avoidance, followed by changes in swim …
Varying Vulnerabilities: Seagrass Species Under Threat From Prolonged Ocean Warming, Marnie L. Campbell, Chi T.U. Le
Varying Vulnerabilities: Seagrass Species Under Threat From Prolonged Ocean Warming, Marnie L. Campbell, Chi T.U. Le
Research outputs 2022 to 2026
Understanding the response of various seagrass species to prolonged elevated water temperatures is crucial for effective management and seagrass species restoration amid increasing climate change-induced ocean warming and marine heat waves. This is especially important in intertidal seagrass meadows, where heat can penetrate substrate depths of up to 50 cm. We assessed and contrasted the responses of five intertidal species—Zostera muelleri Irmisch ex Asch, Halophila ovalis (R.Br.) Hook f., Halodule uninervis (Forssk.) Asch, Halophila decipiens Ostenf., and Halophila spinulosa (R.Br.) Asch—over a month of elevated temperatures by examining rhizome growth, number of living shoots, root development, and sprig survival. While …
Epilithic Algal Composition And The Functioning Of Anthropocene Coral Reefs, Sterling B. Tebbett, Michael J. Emslie, Michelle J. Jonker, Scott D. Ling, Morgan S. Pratchett, Alexandre C. Siqueira, Angus A. Thompson, Helen F. Yan, David R. Bellwood
Epilithic Algal Composition And The Functioning Of Anthropocene Coral Reefs, Sterling B. Tebbett, Michael J. Emslie, Michelle J. Jonker, Scott D. Ling, Morgan S. Pratchett, Alexandre C. Siqueira, Angus A. Thompson, Helen F. Yan, David R. Bellwood
Research outputs 2022 to 2026
Epilithic algae dominate cover on coral reefs globally, forming a critical ecological interface between the benthos and reef organisms. Yet, the drivers of epilithic algal composition, and how composition relates to the distribution of key taxa, remain unclear. We develop a novel metric, the Epilithic Algal Ratio, based on turf cover relative to total epilithic algae cover, and use this metric to assess cross-scale patterns. We reveal water quality and hydrodynamics as the key environmental drivers of the Epilithic Algal Ratio across the Great Barrier Reef (GBR), and reefs globally. On the GBR, the abundance of herbivorous fishes and juvenile …
Contrasting Tropical Marine Herbivorous Fish Catches Between The Indo-Pacific And Western Atlantic, Lucas L. Lutzenkirchen, Sterling B. Tebbett, Helen F. Yan, David R. Bellwood
Contrasting Tropical Marine Herbivorous Fish Catches Between The Indo-Pacific And Western Atlantic, Lucas L. Lutzenkirchen, Sterling B. Tebbett, Helen F. Yan, David R. Bellwood
Research outputs 2022 to 2026
Ensuring food security in the Anthropocene presents a significant socio-ecological challenge, especially in rapidly changing coastal seascapes that sustain critical fisheries. Herbivorous fishes are essential for food and financial security through fisheries, however, their contributions to regional catches, and the factors influencing them, are not well understood. Analysing reported and reconstructed catch data across 69 Exclusive Economic Zones, we identify shallow-reef area and coastal population density as significant predictors of herbivorous fish catches. However, between-realm (i.e. Indo-Pacific vs. Western Atlantic) differences are marked, with rabbitfishes contributing disproportionately to herbivorous fishery catches. While rabbitfishes have the potential to support productive fisheries …
Non-Stereotypy (To Species) In Mysticete Downsweeps, Paul Nguyen Hong Duc, Christine Erbe, Shyam Madhusudhana, Daniel Wilkes, Lachlan Gill, Cristina Tollefsen, Narissa De Bruin, Aiyana Erbeking, Curt Jenner, Micheline Jenner, Angela Recalde-Salas, Chandra P. Salgado Kent, Kautilya Srivastava, Chong Wei, Robert Mccauley
Non-Stereotypy (To Species) In Mysticete Downsweeps, Paul Nguyen Hong Duc, Christine Erbe, Shyam Madhusudhana, Daniel Wilkes, Lachlan Gill, Cristina Tollefsen, Narissa De Bruin, Aiyana Erbeking, Curt Jenner, Micheline Jenner, Angela Recalde-Salas, Chandra P. Salgado Kent, Kautilya Srivastava, Chong Wei, Robert Mccauley
Research outputs 2022 to 2026
The Australian EEZ provides habitat for ten species of mysticete whales seasonally supporting critical life functions ranging from feeding to breeding. All of these species produce downsweeping calls, which may confound passive acoustic monitoring efforts. In an attempt to optimize a detector for Eastern Indian Ocean pygmy blue whale (EIOPBW) downsweeps, we tried a spectrogram correlator based on confirmed templates and a neural network trained on general blue whale D-calls followed by clustering algorithms. Outputs were manually validated by bioacousticians. We found that downsweeps exhibit significant variability and form a graded continuum of acoustic features, as opposed to clusters. Comparative …
Global Patterns And Drivers Of Fish Reproductive Potential On Coral Reefs, Jeneen Hadj-Hammou, Joshua E. Cinner, Diego R. Barneche, Iain R. Caldwell, David Mouillot, James P.W. Robinson, Nina M.D. Schiettekatte, Alexandre C. Siqueira, Brett M. Taylor, Nicholas A.J. Graham
Global Patterns And Drivers Of Fish Reproductive Potential On Coral Reefs, Jeneen Hadj-Hammou, Joshua E. Cinner, Diego R. Barneche, Iain R. Caldwell, David Mouillot, James P.W. Robinson, Nina M.D. Schiettekatte, Alexandre C. Siqueira, Brett M. Taylor, Nicholas A.J. Graham
Research outputs 2022 to 2026
Fish fecundity scales hyperallometrically with body mass, meaning larger females produce disproportionately more eggs than smaller ones. We explore this relationship beyond the species-level to estimate the “reproductive potential” of 1633 coral reef sites distributed globally. We find that, at the site-level, reproductive potential scales hyperallometrically with assemblage biomass, but with a smaller median exponent than at the species-level. Across all families, modelled reproductive potential is greater in fully protected sites versus fished sites. This difference is most pronounced for the important fisheries family, Serranidae. When comparing a scenario where 30% of sites are randomly fully protected to a current …
Environmental Dna Identifies Coastal Plant Community Shift 1,000 Years Ago In Torrens Island, South Australia, Nicole R. Foster, Alice R. Jones, Oscar Serrano, Anna Lafratta, Paul S. Lavery, Kor-Jent Van Dijk, Ed Biffin, Bronwyn M. Gillanders, Jennifer Young, Pere Masque, Patricia S. Gadd, Geraldine E. Jacobsen, Atun Zawadzki, Andria Greene, Michelle Waycott
Environmental Dna Identifies Coastal Plant Community Shift 1,000 Years Ago In Torrens Island, South Australia, Nicole R. Foster, Alice R. Jones, Oscar Serrano, Anna Lafratta, Paul S. Lavery, Kor-Jent Van Dijk, Ed Biffin, Bronwyn M. Gillanders, Jennifer Young, Pere Masque, Patricia S. Gadd, Geraldine E. Jacobsen, Atun Zawadzki, Andria Greene, Michelle Waycott
Research outputs 2022 to 2026
Anthropogenic activities are causing detrimental changes to coastal plants– namely seagrass, mangrove, and tidal marshes. Looking beyond recent times to past vegetation dynamics is critical to assess the response and resilience of an environment to change. Here, we develop a high-resolution multi-proxy approach, providing a new evidence base to decipher long-term change in coastal plant communities. Combining targeted environmental DNA analysis with chemical analysis of soils, we reconstructed 4,000 years of change at a temperate wetland on Torrens Island South Australia and identified an ecosystem shift that occurred ~ 1000 years ago. What was once a subtidal seagrass system shifted …
Patterns Of Carbon And Nitrogen Accumulation In Seagrass (Posidonia Oceanica) Meadows Of The Eastern Mediterranean Sea, Eugenia T. Apostolaki, Paul S. Lavery, Victoria Litsi-Mizan, Eduard Serrano, Karina Inostroza, Vasilis Gerakaris, Thanos Dailianis, Julius Glampedakis, Tara Holitzki, Erik Johnson, Miguel A. Mateo, Oscar Serrano
Patterns Of Carbon And Nitrogen Accumulation In Seagrass (Posidonia Oceanica) Meadows Of The Eastern Mediterranean Sea, Eugenia T. Apostolaki, Paul S. Lavery, Victoria Litsi-Mizan, Eduard Serrano, Karina Inostroza, Vasilis Gerakaris, Thanos Dailianis, Julius Glampedakis, Tara Holitzki, Erik Johnson, Miguel A. Mateo, Oscar Serrano
Research outputs 2022 to 2026
The variability in stocks and accumulation rates of organic carbon (Corg), nitrogen (N), and carbonate (CaCO3) was studied in fifteen Posidonia oceanica meadows spread throughout the South Aegean Sea (Greece). In addition, the abiotic and biotic drivers determining the pattern of variability in the accumulation rates were assessed by exploring the influence of sediment characteristics, seagrass traits, and environmental settings. The meadows supported on average (±STDEV) 14.6 ± 5.0 kg Corg m−2, 0.47 ± 0.17 kg N m−2, and 249 ± 210 kg CaCO3 m−2 in the top meter of their sediments, with mean accumulation rates over the last 500 …
Predation Rates On Flatback Turtle Natator Depressus Eggs And Hatchlings At An Island Rookery, Casper Avenant, Sabrina Fossette, Scott Whiting, Glenn A. Hyndes
Predation Rates On Flatback Turtle Natator Depressus Eggs And Hatchlings At An Island Rookery, Casper Avenant, Sabrina Fossette, Scott Whiting, Glenn A. Hyndes
Research outputs 2022 to 2026
Predation can significantly threaten the vulnerable egg and hatchling stages of sea turtles, yet for most populations this remains poorly quantified for use in conservation. We provided the first quantified predation rates of flatback turtle eggs and hatchlings at Thevenard Island, a medium-sized rookery on the northwest coast of Australia, with a focus on ghost crabs as potential predators. Burrow densities were used as proxy for ghost crab densities, while start- and end-of-season nest inventories and infrared videography were used to quantify egg and hatchling predation, respectively. Inventories of 27 nests suggested a mean hatching success of 74.2 ± 4.6% …
In Hot Water: Uncertainties In Projecting Marine Heatwaves Impacts On Seagrass Meadows, Paula S. Hatum, Kathryn Mcmahon, Kerrie Mengersen, Jennifer K. Mcwhorter, Paul P.Y. Wu
In Hot Water: Uncertainties In Projecting Marine Heatwaves Impacts On Seagrass Meadows, Paula S. Hatum, Kathryn Mcmahon, Kerrie Mengersen, Jennifer K. Mcwhorter, Paul P.Y. Wu
Research outputs 2022 to 2026
Seagrass ecosystems, vital as primary producer habitats for maintaining high biodiversity and delivering numerous ecosystem services, face increasing threats from climate change, particularly marine heatwaves. This study introduces a pioneering methodology that integrates Dynamic Bayesian Networks of ecosystem resilience with climate projections, aiming to enhance our understanding of seagrass responses to extreme climate events. We developed cutting-edge metrics for measuring shoot density and biomass in terms of population and site extinction, presented as annual ratios relative to their respective baselines. These metrics include associated uncertainties and projected recovery times. This innovative approach was applied in a case study focusing on …
Seagrass Classification Using Unsupervised Curriculum Learning (Ucl), Nosheen Abid, Md Kislu Noman, György Kovács, Syed Mohammed Shamsul Islam, Tosin Adewumi, Paul Lavery, Faisal Shafait, Marcus Liwicki
Seagrass Classification Using Unsupervised Curriculum Learning (Ucl), Nosheen Abid, Md Kislu Noman, György Kovács, Syed Mohammed Shamsul Islam, Tosin Adewumi, Paul Lavery, Faisal Shafait, Marcus Liwicki
Research outputs 2022 to 2026
Seagrass ecosystems are pivotal in marine environments, serving as crucial habitats for diverse marine species and contributing significantly to carbon sequestration. Accurate classification of seagrass species from underwater images is imperative for monitoring and preserving these ecosystems. This paper introduces Unsupervised Curriculum Learning (UCL) to seagrass classification using the DeepSeagrass dataset. UCL progressively learns from simpler to more complex examples, enhancing the model's ability to discern seagrass features in a curriculum-driven manner. Experiments employing state-of-the-art deep learning architectures, convolutional neural networks (CNNs), show that UCL achieved overall 90.12 % precision and 89 % recall, which significantly improves classification accuracy and …
Spatial And Environmental Drivers Of Temperate Estuarine Archaeal Communities, Emily Cocksedge, Michael Stat, Alessandra L. Suzzi, Troy F. Gaston, Megan J. Huggett
Spatial And Environmental Drivers Of Temperate Estuarine Archaeal Communities, Emily Cocksedge, Michael Stat, Alessandra L. Suzzi, Troy F. Gaston, Megan J. Huggett
Research outputs 2022 to 2026
Archaea play a crucial role in the global biogeochemical cycling of elements and nutrients, helping to maintain the functional stability of estuarine systems. This study characterised the abundance and diversity of archaeal communities and identified the environmental conditions shaping these microbial communities within six temperate estuaries along approximately 500 km of the New South Wales coastline, Australia. Estuarine sediments were found to exhibit significantly higher species richness than planktonic communities, with representative sequences from the Crenarchaeota phylum characterising each environment. Ordinate analyses revealed catchment characteristics as the strongest drivers of community variability. Our results also provide evidence supporting distance-decay patterns …
Spatial Characterisation And Drivers Of Catch And Effort In Highly Specialised Recreational Pelagic Fisheries, Shannon J. Burchert, Ebenezer Afrifa-Yamoah, Karina L. Ryan, Ute Mueller, Glenn A. Hyndes
Spatial Characterisation And Drivers Of Catch And Effort In Highly Specialised Recreational Pelagic Fisheries, Shannon J. Burchert, Ebenezer Afrifa-Yamoah, Karina L. Ryan, Ute Mueller, Glenn A. Hyndes
Research outputs 2022 to 2026
Large pelagic finfish are highly mobile, distributed across broad geographical scales, and often targeted by both commercial and recreational sectors. Fishing effort in these fisheries is variable due to seasonal patterns in fish behaviour and accessibility of fishing locations. Similarly, fisher behaviour and access are likely to differ within the recreational sector, between private boat-based fishing and charter (or for hire) fishing. Here, we compare spatio-temporal patterns in catch per unit effort (CPUE), effort (boat days) and catch (total catch per fishing party) for private boat-based and charter fishing, and identify environmental variables that may influence those patterns, for two …
Significant Carbonate Burial In The Bahamas Seagrass Ecosystem, Chuancheng Fu, Sofia Frappi, Michelle Nicole Havlik, Wells Howe, S. David Harris, Elisa Laiolo, Austin J. Gallagher, Pere Masque, Carlos M. Duarte
Significant Carbonate Burial In The Bahamas Seagrass Ecosystem, Chuancheng Fu, Sofia Frappi, Michelle Nicole Havlik, Wells Howe, S. David Harris, Elisa Laiolo, Austin J. Gallagher, Pere Masque, Carlos M. Duarte
Research outputs 2022 to 2026
Seagrass meadows store significant amounts of carbonate (CaCO3) in sediment, contributing to coastal protection but potentially offsetting their effectiveness as carbon sinks. Understanding the accumulation of CaCO3 and its balance with organic carbon (Corg) in seagrass ecosystems is crucial for developing seagrass-based blue carbon strategies for climate change mitigation. However, CaCO3 accumulation in seagrass meadows varies significantly across geographic regions, with notable data gaps in the Caribbean and Central America. Here, we sampled 10 seagrass meadows across an extensive island chain in The Bahamas, part of the largest seagrass ecosystem and one of the largest CaCO3 banks globally, to evaluate …
The Rise Of Dietary Diversity In Coral Reef Fishes, Isabelle Ng, David R. Bellwood, Jan M. Strugnell, Valeriano Parravicini, Alexandre C. Siqueira
The Rise Of Dietary Diversity In Coral Reef Fishes, Isabelle Ng, David R. Bellwood, Jan M. Strugnell, Valeriano Parravicini, Alexandre C. Siqueira
Research outputs 2022 to 2026
Diet has been identified as a major driver of reef fish lineage diversification, producing one of the most speciose vertebrate assemblages today. Yet, there is minimal understanding of how, when and why diet itself has evolved. To address this, we used a comprehensive gut content dataset, alongside a recently developed phylogenetic comparative method to assess multivariate prey use across a diverse animal assemblage, coral reef fishes. Specifically, we investigated the diversification, transitions and phylogenetic conservatism of fish diets through evolutionary time. We found two major pulses of diet diversification: one at the end-Cretaceous and one during the Eocene, suggesting that …
Assessing Patterns Of Metazoans In The Global Ocean Using Environmental Dna, Nathan R. Geraldi, Silvia G. Acinas, Intikhab Alam, Josep M. Gasol, María Luz Fernández-De-Puelles, Caterina R. Giner, Santiago Hernández León, Ramiro Logares, Ramon Massana, Pablo Sánchez, Vladimir Bajic, Takashi Gojobori, Carlos M. Duarte
Assessing Patterns Of Metazoans In The Global Ocean Using Environmental Dna, Nathan R. Geraldi, Silvia G. Acinas, Intikhab Alam, Josep M. Gasol, María Luz Fernández-De-Puelles, Caterina R. Giner, Santiago Hernández León, Ramiro Logares, Ramon Massana, Pablo Sánchez, Vladimir Bajic, Takashi Gojobori, Carlos M. Duarte
Research outputs 2022 to 2026
Documenting large-scale patterns of animals in the ocean and determining the drivers of these patterns is needed for conservation efforts given the unprecedented rates of change occurring within marine ecosystems. We used existing datasets from two global expeditions, Tara Oceans and Malaspina, that circumnavigated the oceans and sampled down to 4000 m to assess metazoans from environmental DNA (eDNA) extracted from seawater. We describe patterns of taxonomic richness within metazoan phyla and orders based on metabarcoding and infer the relative abundance of phyla using metagenome datasets, and relate these data to environmental variables. Arthropods had the greatest taxonomic richness of …
Baos-Cnn: A Novel Deep Neuroevolution Algorithm For Multispecies Seagrass Detection, Md Kislu Noman, Syed Mohammed Shamsul Islam, Seyed Mohammad Jafar Jalali, Jumana Abu-Khalaf, Paul Lavery
Baos-Cnn: A Novel Deep Neuroevolution Algorithm For Multispecies Seagrass Detection, Md Kislu Noman, Syed Mohammed Shamsul Islam, Seyed Mohammad Jafar Jalali, Jumana Abu-Khalaf, Paul Lavery
Research outputs 2022 to 2026
Deep learning, a subset of machine learning that utilizes neural networks, has seen significant advancements in recent years. These advancements have led to breakthroughs in a wide range of fields, from natural language processing to computer vision, and have the potential to revolutionize many industries or organizations. They have also demonstrated exceptional performance in the identification and mapping of seagrass images. However, these deep learning models, particularly the popular Convolutional Neural Networks (CNNs) require architectural engineering and hyperparameter tuning. This paper proposes a Deep Neuroevolutionary (DNE) model that can automate the architectural engineering and hyperparameter tuning of CNNs models by …