Marine Biology Commons^™

The Distribution, Abundance, And Gut Microbiome Of Ribbed Mussel, Geukensia Demissa, Across Natural And Restored Salt Marshes In Jamaica Bay, New York, Bethany Freynk

Student Theses and Dissertations

Coastal wetlands perform valuable functions by protecting shorelines from floodwaters and storm surges, providing habitats for marine species, and improving local water quality. Unfortunately, over half of the area of global wetlands has been lost over the past century. Locally, in Jamaica Bay (Queens, NY), loss of wetlands has exceeded 98%. Restoration of Jamaica Bay marshes began in 2003. Ribbed mussels, Geukensia demissa, live symbiotically with marsh plants and have been shown to stabilize sediments and provide organic nutrients that enhance marsh plant growth. Mussels are suspension feeders, which collect algae from seawater and deposit organic matter in marsh sediments. …

Convergent Evolution Of Biochemical Innovations In Polychaetes: Characterizing The Molecular Basis Of Bioluminescence And Venom Production, Aida E. Verdes Gorín

Dissertations, Theses, and Capstone Projects

The convergent evolution of phenotypic traits is a widespread phenomenon across the tree of life and is explained as the outcome of different taxa facing similar selective forces or environmental conditions. A longstanding question in evolutionary biology is whether the evolution of convergent phenotypes in unrelated lineages is driven by similar or different molecular processes. The research presented here investigates this question by characterizing the molecular basis of two biochemical innovations, bioluminescence and venom production, that have evolved independently in different lineages of polychaetes worms (Annelida). We use an integrative approach, combining next-generation sequencing, phylogenetics and computational tools to evaluate …

Effects Of A Beach Nourishment Project In Jamaica Bay, New York, On Horseshoe Crab (Limulus Polyphemus) Spawning Activity And Egg Deposition, Christina P. Colon

Publications and Research

Restoration of horseshoe crab spawning habitats through beach nourishment may be considered as a potential strategy to enhance reproductive success in areas where estuarine beaches have been lost to coastal erosion and development. The US Army Corps of Engineers performed a beach nourishment project at Plumb Beach (Jamaica Bay, Brooklyn, NY) in 2012 to stabilize the shoreline. While the addition of sand was done to protect infrastructure, it created an opportunity to examine the responses of American horseshoe crabs (Limulus polyphemus) to beach nourishment using a BACI (before-after control impact) design. During Spring 2012, be fore beach nourishment, horseshoe crabs …

Behavioral Responses To Pulses Of Light In The Longfin Inshore Squid, Doryteuthis Pealeii (Lesueur, 1821), Stavros P. Hadjisolomou

Dissertations, Theses, and Capstone Projects

The coleoid cephalopods (octopus, squid, and cuttlefish) are masters of rapid, adaptive camouflage. Unlike the slower hormonal chromatophore control of flatfish and chameleons, coleoid mollusks can change body patterns in milliseconds. Visual camouflage in coleoids is driven by a sensorimotor system consisting of visual input of their surroundings, a sophisticated central nervous system for information processing, and a neuromuscular control for body patterning. Motor neurons selectively activate millions of muscles, alternately expanding and reducing the pigmented chromatophores to generate visible brown, red, orange and yellow patterns on the skin. Below the chromatophore-layered skin are two types of reflecting cells, iridophores …

The Role Of Dietary Highly Unsaturated N-3 Fatty Acids In Northern Quahogs, Mercenaria Mercenaria, Through Decreasing Temperature, Sixto E. Portilla

Dissertations, Theses, and Capstone Projects

The series of investigations described in this thesis were designed to assess the effect of diet on mortality through decreasing temperature in two genetic varieties of M. mercenaria important to the natural environment and the aquaculture industry: “wild” from natural stocks and “notata” selected for fast growth. Data from these novel investigations demonstrate a temperature specific sensitivity to each dietary component designating 20:5n-3 as homeoviscously favorable in the upper thermal range above 12°C, and 22:6n-3 as favorable in the lower. Statistical analyses of variance demonstrate distinct cumulative mortalities among the 5 dietary treatments (P < 0.05) for each genetic variety at each thermal range, upper (>12°C) and lower (2 = 0.9326 …

Wsq: At Sea Editors' Note, Cynthia Chris, Matt Brim

Publications and Research

This Editor's Note introduces the WSQ issue "At Sea" co-edited by Terri Gordon-Zolov and Amy Sodaro and Shefali Chandra, which explores the sea as a gendered and radicalized site of violence.

Caged Oysters Still Get Scared: Predator Presence And Density Influence Growth In Oysters, But Only At Very Close Ranges, Stephen Gosnell J., Kali Spurgin, Erica A. Levine

Publications and Research

Two common forms of variation that may influence consumptive and non-consumptive effects differently are how the biomass of predators is allocated among individual predators (e.g., several small vs few large predators) and how predators are spaced throughout a community. We analyzed how varying the presence, biomass (density, size, and total biomass), and distance to crown conchs (Melongena corona) impacted growth in eastern oysters (Crassostrea virginica) grown in field conditions. The presence of predators decreased growth (new shell added and mass) and increased shell thickness in a 58-day experiment. Although these effects were more pronounced as predator …

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

Review Of The Cultivation Program Within The National Alliance For Advanced Biofuels And Bioproducts, Peter J. Lammers, Michael Huesemann, Wiebke Boeing, Daniel B. Anderson, Robert G. Arnold, Xuemei Bai, Manish Bhole, Yalini Brhanavan, Louis Brown, Jola Brown, Judith K. Brown, Stephen Chisholm, C. Meghan Downes, Scott Fulbright, Yufeng Ge, Jonathan E. Holladay, Balachandran Ketheesan, Avinash Khopkar, Ambica Koushik, Paul Laur, Babetta L. Marrone, John B. Mott, Nagamany Nirmalakhandan, Kimberly L. Ogden, Ronald L. Parsons, Juergen Polle, Randy D. Ryan, Tzachi Samocha, Richard T. Sayre, Mark Seger, Thinesh Selvaratnam, Ruixiu Sui, Alex Thomasson, Adrian Unc, Wayne Van Vorrhies, Peter Waller, Yao Yao, José A. Olivares

Publications and Research

The cultivation efforts within the National Alliance for Advanced Biofuels and Bioproducts (NAABB)were developed to provide four major goals for the consortium, which included biomass production for downstream experimentation, development of new assessment tools for cultivation, development of new cultivation reactor technologies, and development of methods for robust cultivation. The NAABB consortium test beds produced over 1500 kg of biomass for downstream processing. The biomass production included a number of model production strains, but also took into production some of the more promising strains found through the prospecting efforts of the consortium. Cultivation efforts at large scale are intensive and …

Novel Adaptive Photosynthetic Characteristics Of Mesophotic Symbiotic Microalgae Within The Reef-Building Coral, Stylophora Pistillata, Shai Einbinder, David F. Gruber, Eitan Salomon, Oded Liran, Nir Keren, Dan Tchernov

Publications and Research

Photosynthetic coral reef structures extend from the shallow sundrenched waters to the dimly lit, “twilight” mesophotic depths. For their resident endosymbiotic dinoflagellates, primarily from the genus Symbiodinium spp., this represents a photic environment that varies ~15-fold in intensity and also differs in spectral composition. We examined photosynthesis in the scleractinian coral Stylophora pistillata in shallow (3 m) and mesophotic settings (65 m) in the northern Red Sea. Symbiodinium spp. in corals originating from the mesophotic environment consistently performed below their photosynthetic compensation point and also exhibited distinct light harvesting antenna organization. In addition, the non-photochemical quenching activity of Symbiodinium spp. …

Ménage À Trois In The Atlantic Brief Squid (Lolliguncula Brevis): Prior Presence Affects Mate Choice, Rachel A. Schlessinger

Theses and Dissertations

Lolliguncula brevis given prior presence experienced a significantly greater number of contacts with opposite sex squid than rivals. Males given prior presence also spent significantly more time in proximity to females than rivals. This suggests that for both female and male Atlantic brief squid, having prior presence influences mating behavior.

Natural Cultch Type Influences Habitat Preference And Predation, But Not Survival, In Reef-Associated Species, Erica A. Levine, Stephen Gosnell J., Emily M. Goetz, Christopher R. Malinowski

Publications and Research

A shared origin with fresh and dredged cultch and availability via mining have made fossil cultch a commonly used reef restoration substrate. However, important differences in shape and size between whole-shell cultch and fossil cultch may impact the complexity of reefs constructed from these materials. To determine if these differences may impact the development of restored reefs, we quantified the interstitial space each cultch type provides and constructed reef mesocosms to measure (1) the immediate effects of exposure to each cultch type on mortality of blue crab (Callinectes sapidus) and pink shrimp (Farfantepenaeus duorarum); (2) the …

Population Genomics Reveals Seahorses (Hippocampus Erectus) Of The Western Mid-Atlantic Coast To Be Residents Rather Than Vagrants, J. T. Boehm, John Waldman, John D. Robinson, Michael J. Hickerson

Publications and Research

Understanding population structure and areas of demographic persistence and transients is critical for effective species management. However, direct observational evidence to address the geographic scale and delineation of ephemeral or persistent populations for many marine fishes is limited. The Lined seahorse (Hippocampus erectus) can be commonly found in three western Atlantic zoogeographic provinces, though inhabitants of the temperate northern Virginia Province are often considered tropical vagrants that only arrive during warm seasons from the southern provinces and perish as temperatures decline. Although genetics can locate regions of historical population persistence and isolation, previous evidence of Virginia Province persistence is only …

Romero’S Curiosity Rooted In Undersea World, Aldemaro Romero Jr.

Publications and Research

No abstract provided.

Octopus Tetricus (Mollusca: Cephalopoda) As An Ecosystem Engineer, David Scheel, Peter Godfrey-Smith, Matthew Lawrence

Publications and Research

The Sydney octopus (Octopus tetricus) occurs in unusual numbers on a shell bed of its prey remains that have accumulated as an extended midden where additional octopuses excavate dens. Here, O tetricus are ecosystem engineers, organisms that modulate availability of resources to other species and to their own species by causing physical state changes in materials. A community of invertebrate grazers and scavengers has developed on the shell bed. Fishes are attracted to the shell bed in numbers significantly greater than in nearby habitats. Large predators, including wobbegong sharks, were attracted to and fed on concentrations of fish, inhibiting the …

Environmental History Of Marine Mammal Exploitation In Trinidad And Tobago, W.I. And Its Ecological Impact, Aldemaro Romero Jr., Ruth Baker, Joel E. Creswell, Anuradha Singh, Annabelle Mckie, Michael Manna

Publications and Research

No abstract provided.

Transcriptome Deep-Sequencing And Clustering Of Expressed Isoforms From Favia Corals, Shaadi F. Pooyaei Mehr, Rob Desalle, Hung-Teh Kao, Apurva Narechania, Zhou Han, Dan Tchernov, Vincent A. Pieribone, David F. Gruber

Publications and Research

Background: Genomic and transcriptomic sequence data are essential tools for tackling ecological problems. Using an approach that combines next-generation sequencing, de novo transcriptome assembly, gene annotation and synthetic gene construction, we identify and cluster the protein families from Favia corals from the northern Red Sea.

Results: We obtained 80 million 75 bp paired-end cDNA reads from two Favia adult samples collected at 65 m (Fav1, Fav2) on the Illumina GA platform, and generated two de novo assemblies using ABySS and CAP3. After removing redundancy and filtering out low quality reads, our transcriptome datasets contained 58,268 (Fav1) and 62,469 (Fav2) contigs …

Edges And Overlaps In Northwest Atlantic Phylogeography, Safra Altman, John D. Robinson, James M. Pringle, James E. Byers, John P. Wares

Publications and Research

As marine environments change, the greatest ecological shifts—including resource usage and species interactions—are likely to take place in or near regions of biogeographic and phylogeographic transition. However, our understanding of where these transitional regions exist depends on the defining criteria. Here we evaluate phylogeographic transitions using a bootstrapping procedure that allows us to focus on either the strongest genetic transitions between a pair of contiguous populations, versus evaluation of transitions inclusive of the entire overlap between two intraspecific genetic lineages. We compiled data for the Atlantic coast of the United States, and evaluate taxa with short- and long-dispersing larval phases …

Preface In New Approaches To The Study Of Marine Mammals, Aldemaro Romero Jr.

Publications and Research

No abstract provided.

When Whales Became Mammals: The Scientific Journey Of Cetaceans From Fish To Mammals In The History Of Science, Aldemaro Romero Jr.

Publications and Research

No abstract provided.

Brunkow Studies Health Of Midwest Freshwaters, Aldemaro Romero Jr.

Publications and Research

No abstract provided.

Medusoid Cnidarians From The Montral-Alcover Lagerstätten (Triassic), Northeastern Spain, Aldemaro Romero Jr., Raymond R. Rogers, Lisa A. Gershwin

Publications and Research

No abstract provided.

Deplete Locally, Impact Globally: Environmental History Of Shore-Whaling In Barbados, W.I, Aldemaro Romero Jr., Joel E. Creswell

Publications and Research

No abstract provided.

Typhlichthys Subterraneus, Aldemaro Romero Jr.

Publications and Research

No abstract provided.

Arkansas State University Students Examine Calif. Seal, Aldemaro Romero Jr.

Publications and Research

No abstract provided.

Ozark Cavefish Aka Amblyopsis Rosae, Aldemaro Romero Jr.

Publications and Research

No abstract provided.

Marine Mammals Laboratory Manual, Aldemaro Romero Jr., Kristen Irwin

Publications and Research

No abstract provided.

Blind Cave Fish Found In Northern Ar. Lake, Aldemaro Romero Jr., Michel Conner

Publications and Research

No abstract provided.

A-State Offering Students Courses On Marine Mammals, Aldemaro Romero Jr.

Publications and Research

No abstract provided.

Arkansas State University Students Prepare Manatee Exhibit, Aldemaro Romero Jr.

Publications and Research

No abstract provided.