Marine Biology Commons^™

Trace Dna Detection Using Diamond Dye: A Recovery Technique To Yield More Dna, Leah Davis

Master's Theses

This study aspires to find a new screening approach to trace DNA recovery techniques to yield a higher quantity of trace DNA from larger items of evidence. It takes the path of visualizing trace DNA on items of evidence with potential DNA so analysts can swab a more localized area rather than attempting to recover trace DNA through the general swabbing technique currently used for trace DNA recovery. The first and second parts consisted of observing trace DNA interaction with Diamond Dye on porous and non-porous surfaces.

The third part involved applying the Diamond Dye solution by spraying it onto …

Rattus Norvegicus As A Biological Detector Of Clandestine Remains And The Use Of Ultrasonic Vocalizations As A Locating Mechanism, Gabrielle M. Johnston

Master's Theses

In investigations, locating missing persons and clandestine remains are imperative. One way that first responder and police agencies can search for the remains is by using cadaver dogs as biological detectors. Cadaver dogs are typically used due to their olfactory sensitivity and ability to detect low concentrations of volatile organic compounds produced by biological remains. Cadaver dogs are typically chosen for their stamina, agility, and olfactory sensitivity. However, what is not taken into account often is the size of the animal and the expense of maintaining and training the animal. Cadaver dogs are typically large breeds that cannot fit in …

A Quieter Ocean: Experimentally Derived Differences In Attentive Responses Of Tursiops Truncatus To Anthropogenic Noise Playbacks Before And During The Covid-19-Related Anthropause, Paige E. Stevens, Veda Allen, Jason N. Bruck

Faculty Publications

The effects of anthropogenic noise continue to threaten marine fauna, yet the impacts of human-produced sound on the broad aspects of cognition in marine mammals remain relatively understudied. The shutdown of non-essential activities due to the COVID-19-related anthropause created an opportunity to determine if reducing levels of oceanic anthropogenic noise on cetaceans affected processes of sensitization and habituation for common human-made sounds in an experimental setting. Dolphins at Dolphin Quest Bermuda were presented with three noises related to human activities (cruise ship, personal watercraft, and Navy low-frequency active sonar) both in 2018 and again during the anthropause in 2021 via …

Using Podcasts To Bring National Estuarine Research Reserves Into The Classroom For Grades 6-12, Kaitlyn M. Dirr

Senior Theses

In a typical classroom setting, there are significant challenges to exposing students to concepts related to earth sciences and the environment. These challenges are exacerbated when conveying lessons about geographic areas with limited access, such as oceans and coastlines (Louv, 2010). It is now more important than ever for environmental education to improve and adapt to our changing world. Educators may have the opportunity to bring these subjects to life by using media content such as podcasts to introduce students to new places and the scientists, managers and educators that work in those spaces. In the United States, there exists …

Rocky Intertidal Community Structure Along An Upwelling Gradient Between Playa Venao And Nueva Gorgona On Panama’S Pacific Coast, Claire Brady

Independent Study Project (ISP) Collection

Ecological research on rocky intertidal ecosystems has increasingly focused on the regional oceanographic processes that shape community structure over functional group interactions. Intertidal communities’ dependence on onshore and offshore transport of intertidal species larvae, dissolved inorganic nutrients, and phytoplankton signal that upwelling and nearshore currents can have an influential role in determining the growth and composition of intertidal systems. The community structure of rocky intertidal areas was compared between two locations along an upwelling gradient in the Gulf of Panama: Nueva Gorgona, with intermittent seasonal upwelling, and Playa Venao, with fringe seasonal upwelling. The surface cover of algae, barnacles, and …

Marine Ecological Protection And Restoration: International Agendas And China Action, Ke Duan, Zhengyan Liu, Shengkang Liang, Yanbin Li, Dongliang Lu

Bulletin of Chinese Academy of Sciences (Chinese Version)

International conventions and initiatives can promote collective action against global crises, and strengthen the efforts of countries to take concerted actions. This study summarizes the important international agendas related to marine ecological conservation and restoration, and analyzes China's policy mechanism in recent years. It believes that the policies in China and international documents are synergistic and effective in jointly strengthening efforts to respond to the global crisis. This study also puts forward some countermeasures and suggestions for China to build a detailed regional marine ecological map, strengthen ecological corridor restoration, improve scientific and technological support systems, and promote international cooperation …

Conceptualizing The Construct Of Ocean Identity, Miriah R. Kelly, Jo-Marie Kasinak, Emma Mckinley, Caitlin Mclaughlin, Jamie M.P. Vaudrey, Jennifer Mattei

Biology Faculty Publications

The construct of ocean identity provides a valuable lens that can unpack the multiple dimensions of human connections with ocean spaces, and crucially places importance on the integration of cognitive, affective, and behavioral components. The construct of ocean identity is applicable in academic and professional contexts, and is largely unexplored from both qualitative and quantitative research perspectives. This comment article presents a revised definition of ocean identity and posits a useful conceptual framework based on a robust analysis of literature to unveil the multiple dimensions that may explain an individuals’ ocean identity. Here we identify a series of attributes that …

Transboundary Marine Species At Risk & Their Recovery In A Changing Climate: Workshop Report, Jonathan J. Choi, Olga Koubrak, Jess Kuesel, Michelle B. Nowlin, Stephen E. Roady, Susan J. Rolston, David L. Vanderzwaag

Faculty Scholarship

No abstract provided.

Examining The Relationship Between Stomiiform Fish Morphology And Their Ecological Traits, Mikayla L. Twiss

All HCAS Student Capstones, Theses, and Dissertations

Trait-based ecology characterizes individuals’ functional attributes to better understand and predict their interactions with other species and their environments. Utilizing morphological traits to describe functional groups has helped group species with similar ecological niches that are not necessarily taxonomically related. Within the deep-pelagic fishes, the Order Stomiiformes exhibits high morphological and species diversity, and many species undertake diel vertical migration (DVM). While the morphology and behavior of stomiiform fishes have been extensively studied and described through taxonomic assessments, the connection between their form and function regarding their DVM types, morphotypes, and daytime depth distributions is not well known. Here, three …

Policy Implications Of Managing Biodiversity And Natural Resources Across International Boundaries, Dillon Brown

Dissertations

Fisheries Management under the best of scenarios is a complex action. It requires thoughtful consideration of resources that tend to be out of sight, widely distributed, highly variable both spatially and temporally, and present dramatic variation in life history and ecology. No one management approach has been developed which can effectively incorporate all these variables. Add to this the issue of transnational boundary movements of these resources, and one discovers that this complex issue needs to be addressed by multiple entities, agencies, and nations to have any chance of success.

This research set out to discover ways in which fisheries …

Caribbean Reef-Building Coral-Symbiodiniaceae Network: Identifying Symbioses Critical For System Stability In A Changing Climate, Shaman Patel

All HCAS Student Capstones, Theses, and Dissertations

Increasing global ocean temperatures and frequency of marine heatwaves pose dire consequences for coral reefs. High temperatures often lead to disruptions in coral symbiosis resulting in coral bleaching, increasing the mortality of corals. However, corals can potentially avoid bleaching peril by associating with thermally tolerant symbionts. Here we provide a tool for understanding symbiosis network stability of Caribbean reef-building corals. We created a network of Caribbean hermatypic corals and their associated Symbiodiniaceae phylotypes. A bleaching model was applied to this network to test for resilience and robustness (R50) to thermal stress. It was also layered with trait data for coral …

The Rise Of Terrorism In Africa And What It Means For U.S. Policymakers, Bridget Mary Hughes

Master's Theses

This thesis utilizes three case studies to measure the rise of terrorism in Africa. This qualitative data leads the reader to one ultimate question: what does the rise in terrorism in Africa mean for the United States (U.S.) and U.S. policymakers, National Security academia, students in National Security, if anything at all? The answer is: if civilian and military compounds are being targeted by these violent extremists, as these three case studies demonstrate, it is my recommendation that U.S. policymakers cease sending troops to the African theater and, instead, allocate funding to the citizens and nonprofits of the countries whom …

Nexus Between Animal Welfare, Environment, And Sustainable Development: Resource Document, Wellbeing International

Nexus – UNEP – Animal Welfare, Environment, Sustainable Development

This Resource Document has been developed to explore the Nexus (links) between Animal Welfare, the Environment, and Sustainable Development. The document includes relevant citations and reports addressing the topics encompassed by the Nexus. It will be maintained as a “living document” (subject to revision) in the WellBeing International Studies Repository. The original document and subsequent revisions will be kept in the Repository to provide a record of the changes.

Treatments Of Cyanobacteria On Mariculture Sponges In Jambiani, Tanzania, Sally Thornton-White

Independent Study Project (ISP) Collection

Since 2009, Marine Cultures, an NGO, has explored sponge farming in Jambiani to develop secure and sustainable livelihoods for the community. While sponge farming provides economic opportunity for an industry that functions within ecological boundaries, it faces unique issues that threaten its success. As climate change increases global water temperatures, cyanobacteria are causing increased death rates among mariculture sponges. Mitigating these negative effects with sustainable and reliable solutions can help Marine Cultures grow their positive impact. Alternative methods for mitigating cyanobacteria growth were tested during three study phases. Phase 1 tested how sponge health and algae growth responds to being …

Understanding Across The Senses: Cross-Modal Studies Of Cognition In Cetaceans, Jason N. Bruck, Adam A. Pack

Faculty Publications

Cross-modal approaches to the study of sensory perception, social recognition, cognition, and mental representation have proved fruitful in humans as well as in a variety of other species including toothed whales in revealing equivalencies that suggest that different sensory stimuli associated with objects or individuals may effectively evoke mental representations that are, respectively, object based or individual based. Building on established findings of structural equivalence in the form of spontaneous recognition of complex shapes across the modalities of echolocation and vision and behavior favoring identity echoic–visual cross-modal relationships over associative echoic–visual cross-modal relationships, examinations of transitive inference equivalencies from initially …

Global Food Insecurity And Famine From Reduced Crop, Marine Fishery And Livestock Production Due To Climate Disruption From Nuclear War Soot Injection, Lilia Xia, Alan Robock, Kim J. N. Scherrer, Cheryl S. Harrison, Benjamin Leon Bodirsky, Isabelle Weindl, Jonas Jaegermeyr, Charles G. Bardeen, Owen B. Toon, Ryan F. Heneghan

School of Earth, Environmental, & Marine Sciences Faculty Publications

Atmospheric soot loadings from nuclear weapon detonation would cause disruptions to the Earth’s climate, limiting terrestrial and aquatic food production. Here, we use climate, crop and fishery models to estimate the impacts arising from six scenarios of stratospheric soot injection, predicting the total food calories available in each nation post-war after stored food is consumed. In quantifying impacts away from target areas, we demonstrate that soot injections larger than 5 Tg would lead to mass food shortages, and livestock and aquatic food production would be unable to compensate for reduced crop output, in almost all countries. Adaptation measures such as …

Impacts On Fast-Start Performance: How Do Group Size And Habitat Degradation Alter The Escape Behavior Of A Schooling Coral Reef Fish?, Monica D. Bacchus

All HCAS Student Capstones, Theses, and Dissertations

Escaping predation is essential for species survival, but prey must effectively match their response to the perceived threat imposed by a predator. Fish evaluate their surroundings using several sensory stimuli, including olfactory, visual, auditory, and mechanical cues. A range of taxa use the fast-start response to evade predators, including fishes, sharks, and larval amphibians. While the fast-start response (rapid bursts of swimming) is extensively studied in solitary fishes, the factors that mediate the collective escape response in schools of fish have historically been investigated far less. To address this knowledge gap, the collective escape behavior and individual escape performance of …

Formulating Decade Action Plan For Green And Quality Development In Bohai Sea, Shicheng Wang, Shuguang Liu, Hongsheng Yang

Bulletin of Chinese Academy of Sciences (Chinese Version)

As the only inland sea of China, Bohai Sea has been regarded as the integrated part of the national territorial space toward green and high-quality development in the new era. The comprehensive environmental treatment in Bohai Sea has achieved noticeable progress, but the problems remain. The trend of biological and ecological degradation of Bohai Sea has not been fundamentally curbed. Guided by President Xi Jinping thought on ecological civilization and on building a maritime community with a shared future, China should join into the Implementation Plan for the United Nations Decade of Marine Science for Sustainable Development (2021-2030), and manage …

Marine Ranching Version 3.0: History, Status And Prospects, Hongsheng Yang, Dewen Ding

Bulletin of Chinese Academy of Sciences (Chinese Version)

Since the 1930s, the construction of marine ranching has successively experienced the version 1.0 (traditional marine ranching) of farming-ranching and engineering, and the version 2.0 (marine ecological ranching) of ecologization and informatization, and now it is about to enter the version 3.0 (global aquatic ecological ranching) of digitalization and systematization, which covers seawater and fresh water. Marine ranching version 3.0 must adhere to the modern aquatic ecological ranching development concept of "ecology, precision, intelligence, integration", characterized by synchronous protection and utilization, expansion of scene and space, breakthrough in core technology, and innovation in development patterns. After establishing the whole industrial …

Fisheries Management Paper No. 276: Western Australian Silverlip Pearl Oyster (Pinctada Maxima) Resource Harvest Strategy 2022 - 2026, Version 2.0, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Management Papers

Harvest strategies for aquatic resources in Western Australia (WA) are formal documents that support decision making processes which are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). The objectives of ESD are reflected in the Fish Resources Management Act 1994 (FRMA), Section 3, and the Aquatic Resources Management Act 2016 (ARMA), Section 9, which will replace the FRMA once enacted.

This Harvest Strategy aligns with DPIRD’s Harvest Strategy Policy for Aquatic Resources (Department of Fisheries 2015) and is consistent with national Harvest Strategy policies and guidelines (Sloan …

Using Deep Learning And Uav Imagery To Detect Elkhorn Coral In St. Croix’S East End Marine Park, Samuel Wyatt

Master's Theses

Elkhorn coral, or Acropora palmata, is an important reef building species that promotes species abundance and other ecological services to the communities in the US Virgin Islands. We captured high resolution imagery of a reef in St. Croix’s East End Marine Park using a Wingtra One UAV. We then used deep learning techniques to detect individual coral colonies. We compared two deep learning models, FasterRCNN and MaskRCNN, and found that the models achieved accuracy shores up to 0.78. These scores improved when examining only larger corals in shallow waters. The model was able to both detect Elkhorn coral and …

Global And Regional Sea Level Rise Scenarios For The United States: Updated Mean Projections And Extreme Weather Level Probabilities Along U.S. Coastlines, William V. Sweet, Benjamin D. Hamlington, Robert E. Kopp, Christopher P. Weaver, Patrick L. Barnard, David Bekaert, William Brooks, Michael Craghan, Gregory Dusek, Thomas Frederikse, Gregory Garner, Ayesha S. Genz, John P. Krasting, Eric Larour, Doug Marcy, John J. Marra, Jayantha Obeysekera, Mark Osler, Matthew Pendleton, Daniel Roman, Lauren Schmied, Will Veatch, Kathleen D. White, Casey Zuzak

National Oceanographic and Atmospheric Administration: Technical Reports and Related Materials

This report and accompanying datasets from the U.S. Sea Level Rise and Coastal Flood Hazard Scenarios and Tools Interagency Task Force provide 1) sea level rise scenarios to 2150 by decade that include estimates of vertical land motion and 2) a set of extreme water level probabilities for various heights along the U.S. coastline. These data are available at 1-degree grids along the U.S. coastline and downscaled specifically at NOAA tide-gauge locations. Estimates of flood exposure are assessed using contemporary U.S. coastal flood-severity thresholds for current conditions (e.g., sea levels and infrastructure footprint) and for the next 30 years (out …

Sentience In Decapods: Difficulties To Surmount, Michael L. Woodruff

Animal Sentience

In the target article Crump et al. present 8 criteria to assess whether decapods experience pain. Four of these -- sensory integration, motivational trade-offs, flexible self-protection, and associative learning -- could be used to assess sentience in general. In this commentary I discuss difficulties with using these criteria to provide evidence of sentience in decapods, particularly if this evidence is to change public opinion and policies. These difficulties are lack of evidence, the potential to eventually explain the neurobiological basis of the behaviors chosen as criteria, thereby eliminating any explanatory work for sentience, and the reluctance to bring animals that …

The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 2. Assessing Economic Impacts, Andrew M. Scheld, Jennifer Beckensteiner, Daphne M. Munroe, Eric N. Powell, Sarah Borsetti, Eileen E. Hofmann, John M. Klinck

CCPO Publications

The Atlantic surfclam (Spisula solidissima) fishery generates approximately USD 30 million in landings revenues annually, distributed across ports throughout the US Mid-Atlantic and Northeast. Overlap between areas of Atlantic surfclam harvests and offshore wind energy leasing make the fishery vulnerable to exclusion and effort displacement as development expands in the region. An existing integrated bioeconomic agent-based model, including spatial dynamics in Atlantic surfclam stock biology, heterogeneous captain behaviour, and federal management processes, was extended to incorporate costs and revenues for fishing vessels and processors and used to evaluate the potential economic effects of offshore wind development on the …

A Comparative Test Of Creative Thinking In Preschool Children And Dolphins, Dawn Melzer, Deirdre Yeater, Madison Bradley, Heather M. Hill, Gonzalo Guerra, Kimberly Salazar, Teresa Bolton, Kathleen M. Dudzinski

Psychology Faculty Publications

Creativity is considered one aspect of intelligence. Including creativity allows for more room for expression (e.g., participants can respond with movement instead of written or verbal responses) than in standard intelligence assessments. The Torrance Tests of Creative Thinking (TTCT; Torrance, 1974) are the leading method of assessing creative abilities in school-aged humans and above. To assess creativity in young humans and nonhuman animals, modifications must be made to facilitate nonverbal responses. In the current study, a cross-species comparison was conducted between preschoolers and bottlenose dolphins to examine responses to a modified creativity task in which both species were trained to …

It Takes A Muscle: Wholes, Holes, And Other Voids, Saar Shemesh

Theses and Dissertations

IT TAKES A MUSCLE¹

In the BELLY of the BEAST, the HUMAN

in the deep end of a SWIMMING POOL

in a GRAVE, looking up/out from within

at the base of a CRATER, ABYSS, PIT

the room as a CRADLE, INCUBATOR

architecture as MOTHER MOULD.²

____________________________

¹ Title is borrowed and abbreviated: Spectral Display, “It Takes A Muscle To Fall In Love,” 1982.

² For what American-English delineates as ‘mold,’ British-English uses ‘mould’ and is more specific in its technicality. The former doesn’t distinguish in spelling between mold (fungus) and mold (mould). I’m not particularly a fan of …

Light Pollution Levels On Beaches: How Window Tinting Effects Disorientation Of Sea Turtles On Hilton Head Island, Kathryn (Kate) Hettiger

Biology: Student Scholarship & Creative Works

Loggerhead sea turtles, an endangered species, are decreasing at alarming rates worldwide. Artificial light from beachfront hotels on Hilton Head Island are causing disorientation in Loggerhead sea turtle hatchlings affecting their ability to successfully find the ocean. To mitigate this, exterior windows facing the ocean will be tinted using either tinting spray, which will be implemented at the Marriott Grande Ocean, or using tinting film, which will be implemented at the Marriott Westin. During the typical nesting and hatching season (May-October), sea turtle hatchling tracks will be recorded using drones to compare the effects of various levels of light pollution …

Cetacean Acousticwelfare In Wild And Managed-Care Settings: Gaps And Opportunities, Paige E. Stevens, Heather Hill, Jason N. Bruck

Faculty Publications

Cetaceans are potentially at risk of poor welfare due to the animals’ natural reliance on sound and the persistent nature of anthropogenic noise, especially in the wild. Industrial, commercial, and recreational human activity has expanded across the seas, resulting in a propagation of sound with varying frequency characteristics. In many countries, current regulations are based on the potential to induce hearing loss; however, a more nuanced approach is needed when shaping regulations, due to other non-hearing loss effects including activation of the stress response, acoustic masking, frequency shifts, alterations in behavior, and decreased foraging. Cetaceans in managedcare settings share the …

Wrack Lines Volume 21, Number 2, Fall/Winter 2021-22, Nancy C. Balcom, Judy Benson, Syma A. Ebbin, Kira Goldenberg, Judy Preston, Howard "Mickey" Weiss

Wrack Lines

"Discovery, Rediscovery and Rebirth: new eyes, new understanding of familiar places" is the theme for the Fall-Winter 2021-22 issue. The main article package consists of five stories about the lands and waters that will comprise the Connecticut National Estuarine Research Reserve (CT NERR). These are: overview and introduction; Great Island; lower Thames River; Bluff Point State Park; and Haley Farm State Park. Other articles include one on research into the cause of invasive Cladophora seaweed dominating Little Narragansett Bay; and another on the transformation of the Yale Peabody Museum of Natural History.

Otoliths Of South-Western Australian Fish: A Photographic Catalogue, Chris Dowling, Kim Smith, Elaine Lek, Joshua Brown

Fisheries Research Reports

Due to the species-specific nature of otoliths and given they are often the only part of the fish preserved when fish die, otolith catalogues can be used in numerous applications, such as diet studies in fish eating animals, including pinnipeds, fish and sea birds; archaeological purposes such as reconstructing indigenous people’s diets from otoliths found in middens or evolutionary history of fish species by comparing fossilized otoliths. Given the unique mixture of subtropical and temperate fish, including many endemic species that occur off the southwest corner of WA having a catalogue for this area is extremely important for people working …