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Full-Text Articles in Marine Biology

Influence Of Microbial Priming And Seeding Depth On Germination And Growth Of Native Wildflowers, Daniela Barrera, Juan Luera, Kaitlynn Lavallee, Pushpa Soti Mar 2021

Influence Of Microbial Priming And Seeding Depth On Germination And Growth Of Native Wildflowers, Daniela Barrera, Juan Luera, Kaitlynn Lavallee, Pushpa Soti

School of Earth, Environmental, & Marine Sciences Faculty Publications

Background: Using native wildflowers for restoring marginal lands has gained considerable popularity. Establishment of wildflowers can be challenging due to several environmental factors. Restoring the microbial community in degraded habitats can potentially result in the native plant performance and habitat restoration. This study was conducted to investigate the impact of native soil microbes and seeding depth on germination of south Texas native wildflowers. Two wildflower species, Ratibida columnifera (Nutt.) (Mexican Hat) and Verbesina encelioides (Cav.) (cowpen daisy), were treated with microbial wash extracted from native soils, and germination rate was recorded for 14-day period. We further analyzed the growth, biomass …


Environmental Forcing On Zooplankton Distribution In The Coastal Waters Of The Galápagos Islands: Spatial And Seasonal Patterns In The Copepod Community Structure, Diego F. Figueroa Mar 2021

Environmental Forcing On Zooplankton Distribution In The Coastal Waters Of The Galápagos Islands: Spatial And Seasonal Patterns In The Copepod Community Structure, Diego F. Figueroa

School of Earth, Environmental, & Marine Sciences Faculty Publications

The oceanographic setting of the Galápagos Archipelago results in a spatially diverse marine environment suitable for a variety of species with different climatic requirements. The goal of this study is to demonstrate that the community of zooplankton in the Galápagos is highly structured by regional differences in productivity patterns and advective sources. Results are mostly based on biodiversity patterns of the copepod community collected over the Galápagos shelf between 2004 and 2006. Two contrasting marine environments were observed: a nutrientrich upwelling system with a shallow mixed layer and a diatom-dominated phytoplankton community in the west, and a non-upwelling system with …


Impacts Of Petroleum, Petroleum Components, And Dispersants On Organisms And Populations, Steven A. Murawski, Martin Grosell, Cynthia Smith, Tracey Sutton, Kenneth M. Halanych, Richard F. Shaw, Charles A. Wilson Mar 2021

Impacts Of Petroleum, Petroleum Components, And Dispersants On Organisms And Populations, Steven A. Murawski, Martin Grosell, Cynthia Smith, Tracey Sutton, Kenneth M. Halanych, Richard F. Shaw, Charles A. Wilson

Marine & Environmental Sciences Faculty Articles

Following the Deepwater Horizon blowout, oil, degraded oil, oil mixed with dispersants, and management responses to the spill affected a variety of Gulf of Mexico organisms. This review provides examples of various documented impacts, common patterns, and trends across organisms and/or their environments, and discusses future implications as well as directions for future research. Organism effects are generally characterized as lethal and sublethal. Sublethal can be short term, long term, or permanent and multigenerational. We present individual examples of effects on behavioral response, olfaction, vision, cardiac function, and gene shift, based on research done in laboratories, mesocosm settings, and the …


Seasonal Controls On Nearshore Hypoxia In A Small Coastal Embayment, Stephen Alexander Huie Mar 2021

Seasonal Controls On Nearshore Hypoxia In A Small Coastal Embayment, Stephen Alexander Huie

Physics

Dissolved oxygen (DO) is an important biogeochemical factor that strongly influences nearshore coastal ecosystems. Low DO (hypoxic) events can cause physiological stressful environments for ecological and economically important species, potentially leading to mass mortalities. In order to better assess drivers of coastal hypoxia, we collected data from monthly cruises on the inner shelf and nearshore moorings inside and outside a small coastal embayment (San Luis Obispo Bay on the Central California Coast) across the full upwelling season (March to August). During the late spring and early summer, we found that the nearshore near-bottom temperature-DO (T-DO) relationship aligned with the shelf …


State Of Satiation Partially Regulates The Dynamics Of Vertical Migration, Ryan P. Bos, Tracey Sutton, Tamara Frank Feb 2021

State Of Satiation Partially Regulates The Dynamics Of Vertical Migration, Ryan P. Bos, Tracey Sutton, Tamara Frank

Marine & Environmental Sciences Faculty Articles

Vertical migrations into shallower waters at night are beneficial for migrators as they reduce predation risk and allow migrators to encounter a higher density of prey. Nevertheless, ocean acoustics data and trawl data have shown that a portion of some vertically migrating populations remain at depth and do not migrate. One hypothesis for this phenomenon is the Hunger-Satiation hypothesis, which in part states that the non-migrating portion of the migrating species-assemblage refrains from migrating if they have full or partially full stomachs from daytime or nocturnal feeding. However, stomach fullness of the non-migrating subpopulation compared to the migrating portion has …


Comparison Of A Smartfin With An Infrared Sea Surface Temperature Radiometer In The Atlantic Ocean, Robert J. W. Brewin, Werenfrid Wimmer, Phillip J. Bresnahan, Tyler Cyronak, Andreas J. Andersson, Giorgio Dall’Olmo Feb 2021

Comparison Of A Smartfin With An Infrared Sea Surface Temperature Radiometer In The Atlantic Ocean, Robert J. W. Brewin, Werenfrid Wimmer, Phillip J. Bresnahan, Tyler Cyronak, Andreas J. Andersson, Giorgio Dall’Olmo

Marine & Environmental Sciences Faculty Articles

The accuracy and precision of satellite sea surface temperature (SST) products in nearshore coastal waters are not well known, owing to a lack of in-situ data available for validation. It has been suggested that recreational watersports enthusiasts, who immerse themselves in nearshore coastal waters, be used as a platform to improve sampling and fill this gap. One tool that has been used worldwide by surfers is the Smartfin, which contains a temperature sensor integrated into a surfboard fin. If tools such as the Smartfin are to be considered for satellite validation work, they must be carefully evaluated against state-of-the-art techniques …


Environmental Drivers Of Mesophotic Echinoderm Assemblages Of The Southeastern Pacific Ocean, Ariadna Mecho, Boris Dewitte, Javier Sellanes, Simon Van Gennip, Erin E. Easton, Joao B. Gusmao Feb 2021

Environmental Drivers Of Mesophotic Echinoderm Assemblages Of The Southeastern Pacific Ocean, Ariadna Mecho, Boris Dewitte, Javier Sellanes, Simon Van Gennip, Erin E. Easton, Joao B. Gusmao

School of Earth, Environmental, & Marine Sciences Faculty Publications

Mesophotic ecosystems (50–400 m depth) of the southeastern Pacific have rarely been studied because of the logistical challenges in sampling across this remote zone. This study assessed how oxygen concentrations and other environmental predictors explain variation in echinoderm assemblages at these mesophotic systems, where this group is among the predominant fauna. We compiled data on echinoderm taxa at 91 sampling stations, from historical and recent surveys (between 1950 and 2019), covering a longitudinal gradient of approximately 3,700 km along with the Nazca, Salas y Gómez, and Juan Fernández ridges. Uni- and multivariate model-based tools were applied to analyze the patterns …


Identifying Nitrogen Source And Seasonal Variation In A Black Mangrove (Avicennia Germinans) Communityof The South Texas Coast, Ashley Elizabeth Murphy, Carlos E. Cintra-Buenrostro, Alejandro Fierro-Cabo Feb 2021

Identifying Nitrogen Source And Seasonal Variation In A Black Mangrove (Avicennia Germinans) Communityof The South Texas Coast, Ashley Elizabeth Murphy, Carlos E. Cintra-Buenrostro, Alejandro Fierro-Cabo

School of Earth, Environmental, & Marine Sciences Faculty Publications

Black mangrove (Avicennia germinans) stands in south Texas grow in association with other autotrophic organisms including herbaceous halophytes and cyanobacterial mats. Despite the relevant ecosystem services provided by this coastal plant community, limited information exists on its functioning, in particular as it pertains to nutrient dynamics, namely nitrogen (N). Nitrogen stable isotopes were used to assess potential N sources for plant growth in this community. Plant tissue (leaves), cyanobacteria, and sediment were sampled once every season for one year. Total N in A. germinans (2.6 %) and associated saltwort (Batis maritima) (2.1 %) was higher than in cyanobacteria (0.6 %), …


Influence Of Land Use Intensity And Management On Arbuscular Mycorrhizal Fungi-Avocado Symbiosis, Pushpa Soti, Bulent Toprak, Nina De La Rosa, Krish Jayachandran Feb 2021

Influence Of Land Use Intensity And Management On Arbuscular Mycorrhizal Fungi-Avocado Symbiosis, Pushpa Soti, Bulent Toprak, Nina De La Rosa, Krish Jayachandran

School of Earth, Environmental, & Marine Sciences Faculty Publications

This study was done to assess the effect of soil disturbance on arbuscular mycorrhizal fungi spore abundance and root colonization in avocado (Persea americana Mill.). Rhizosphere soil and root samples of avocado were collected from different farms in south Florida and analyzed for degree of mycorrhizal colonization in roots, spore density and diversity in soil along with soil characteristics. There was significant difference in the soil characteristics among the different farms. Similarly, there was a significant difference in the degree of mycorrhizal colonization in the roots and the arbuscular mycorrhizal fungi spore morphotypes among different land use and management practices. …


Developing A Method To Track Marine Snow Aggregation Through Individual Collisions Using Stereoscopic Imaging, Riley Henning Jan 2021

Developing A Method To Track Marine Snow Aggregation Through Individual Collisions Using Stereoscopic Imaging, Riley Henning

Theses

The aggregation of individual phytoplankton into marine snow allows particles to sink more quickly, thus resulting in the transport of particulate organic carbon from surface waters to the deep ocean. Aggregate formation has previously been measured in experiments indirectly by quantifying how particle size or particle concentration changes over time. Here, I present my thesis in which I applied high-resolution imaging to quantify aggregate formation using two different methodologies.

We conducted experiments to investigate aggregate formation using stereoscopic imaging, tracking individual particles directly in a 3D volume. Phytoplankton cultures were rolled in cylindrical tanks and imaged by two cameras illuminated …


Otolith Microchemistry Reveals Low Habitat Connectivity Of California Killifish (Fundulus Parvipinnis) Across A Range Of Spatial Scales, Lisa Robison Jan 2021

Otolith Microchemistry Reveals Low Habitat Connectivity Of California Killifish (Fundulus Parvipinnis) Across A Range Of Spatial Scales, Lisa Robison

Theses

As wetlands face continued fragmentation worldwide, an understanding of habitat connectivity and how fishes that rely on these environments is imperative to conduct effective marine management. Site fidelity and habitat connectivity are vital measures of the interdependence of fish populations living in neighboring marshes (or in regions of a single marsh).

Here, we examine the habitat connectivity, site fidelity, and movement of California killifish (Fundulus parvipinnis) within and among three estuaries in Southern California through otolith microelemental analysis. Assessing the site fidelity of estuarine fishes is important to determine the level of connectivity between spatially distinct populations within …


Atlantic Sailfish (Istiophorus Albicans) Distribution Off The East Coast Of Florida From 2003 To 2018 In Response To Sea Surface Temperature, Meredith M. Pratt Jan 2021

Atlantic Sailfish (Istiophorus Albicans) Distribution Off The East Coast Of Florida From 2003 To 2018 In Response To Sea Surface Temperature, Meredith M. Pratt

Mako: NSU Undergraduate Student Journal

The Atlantic sailfish (Istiophorus albicans) ranges from 40°N to 40°S in the Western Atlantic Ocean and has great economic and recreational value for sport fishers. Off the east coast of Florida, recreational fishing boats often target this species due to its size, speed and strength. This project aimed to determine the relationship between sea surface temperature (SST) and the distribution of Atlantic sailfish caught and released over a fifteen-year period (2003 to 2018). Tagging information was collected from The Billfish Foundation and NOAA who have the most extensive programs for billfish. Using the time and location of each …


An Indo-Pacifc Coral Spawning Database, Andrew H. Baird, James R. Guest, Alasdair J. Edwards, Andrew G. Bauman, Jessica Bouwmeester, Hanaka Mera, David Abrego, Mariana Alvera-Noriega, Russel C. Babcock, Miguel B. Barbosa, Victor Bonito, John Burt, Patrick C. Cabaitan, Ching-Fong Chang, Suchana Chavanich, Chaolun A. Chen, Chieh-Jhen Chen, Wei-Jen Chen, Fung-Chen Chung, Sean R. Connolly, Vivian R. Cumbo, Maria Dornelas, Christopher Doropoulos, Gal Eyal, Lee Eyal-Shaham, Nur Fadli, Joana Figueiredo, Jean-François Flot, Sze-Hoon Gan, Elizabeth Gomez, Erin M. Graham, Mila Grinblat, Nataly Gutiérrez-Isaza, Saki Harii, Peter L. Harrison, Masayuki Hatta, Nina Ann Jin Ho, Gaetan Hoarau, Mia Hoogenboom, Emily J. Howells, Akira Iguchi, Naoko Isomura, Emmeline A. Jamodiong, Suppakarn Jandang, Jude Keyse, Seiya Kitanobo, Narinratana Kongjandtre, Chao-Yang Kuo, Charlon Ligson, Che-Hung Lin, Jeffrey Low, Yossi Loya, Elizaldy A. Maboloc, Joshua S. Madin, Takuma Mezaki, Choo Min, Masaya Morita, Aurelie Moya, Su-Hwei Neo, Matthew R. Nitschke, Satoshi Nojima, Yoko Nozawa, Srisakul Piromvaragorn, Sakanan Plathong, Eneour Puill-Stephan, Kate Quigley, Catalina Ramirez-Portilla, Gerard Ricardo, Kazuhiko Sakai, Eugenia Sampayo, Tom Shlesinger, Leony Sikim, Chris Simpson, Carrie A. Sims, Frederic Sinniger, Davies A. Spiji, Tracy Tabalanza, Chung-Hong Tan, Tullia I. Terraneo, Gergely Torda, James True, Karenne Tun, Kareen Vicentuan, Voranop Viyakarn, Zarinah Waheed, Selina Ward, Bette Willis, Rachael M. Woods, Erika S. Woolsey, Hiromi H. Yamamoto, Syafyudin Yusuf Jan 2021

An Indo-Pacifc Coral Spawning Database, Andrew H. Baird, James R. Guest, Alasdair J. Edwards, Andrew G. Bauman, Jessica Bouwmeester, Hanaka Mera, David Abrego, Mariana Alvera-Noriega, Russel C. Babcock, Miguel B. Barbosa, Victor Bonito, John Burt, Patrick C. Cabaitan, Ching-Fong Chang, Suchana Chavanich, Chaolun A. Chen, Chieh-Jhen Chen, Wei-Jen Chen, Fung-Chen Chung, Sean R. Connolly, Vivian R. Cumbo, Maria Dornelas, Christopher Doropoulos, Gal Eyal, Lee Eyal-Shaham, Nur Fadli, Joana Figueiredo, Jean-François Flot, Sze-Hoon Gan, Elizabeth Gomez, Erin M. Graham, Mila Grinblat, Nataly Gutiérrez-Isaza, Saki Harii, Peter L. Harrison, Masayuki Hatta, Nina Ann Jin Ho, Gaetan Hoarau, Mia Hoogenboom, Emily J. Howells, Akira Iguchi, Naoko Isomura, Emmeline A. Jamodiong, Suppakarn Jandang, Jude Keyse, Seiya Kitanobo, Narinratana Kongjandtre, Chao-Yang Kuo, Charlon Ligson, Che-Hung Lin, Jeffrey Low, Yossi Loya, Elizaldy A. Maboloc, Joshua S. Madin, Takuma Mezaki, Choo Min, Masaya Morita, Aurelie Moya, Su-Hwei Neo, Matthew R. Nitschke, Satoshi Nojima, Yoko Nozawa, Srisakul Piromvaragorn, Sakanan Plathong, Eneour Puill-Stephan, Kate Quigley, Catalina Ramirez-Portilla, Gerard Ricardo, Kazuhiko Sakai, Eugenia Sampayo, Tom Shlesinger, Leony Sikim, Chris Simpson, Carrie A. Sims, Frederic Sinniger, Davies A. Spiji, Tracy Tabalanza, Chung-Hong Tan, Tullia I. Terraneo, Gergely Torda, James True, Karenne Tun, Kareen Vicentuan, Voranop Viyakarn, Zarinah Waheed, Selina Ward, Bette Willis, Rachael M. Woods, Erika S. Woolsey, Hiromi H. Yamamoto, Syafyudin Yusuf

Marine & Environmental Sciences Faculty Articles

The discovery of multi-species synchronous spawning of scleractinian corals on the Great Barrier Reef in the 1980s stimulated an extraordinary effort to document spawning times in other parts of the globe. Unfortunately, most of these data remain unpublished which limits our understanding of regional and global reproductive patterns. The Coral Spawning Database (CSD) collates much of these disparate data into a single place. The CSD includes 6178 observations (3085 of which were unpublished) of the time or day of spawning for over 300 scleractinian species in 61 genera from 101 sites in the Indo-Pacific. The goal of the CSD is …


Thermal Acclimation Of Tropical Coral Reef Fishes To Global Heat Waves, Jacob L. Johansen, Lauren E. Nadler, Adam Habary, Alyssa J. Bowden, Jodie Rummer Jan 2021

Thermal Acclimation Of Tropical Coral Reef Fishes To Global Heat Waves, Jacob L. Johansen, Lauren E. Nadler, Adam Habary, Alyssa J. Bowden, Jodie Rummer

Marine & Environmental Sciences Faculty Articles

As climate-driven heat waves become more frequent and intense, there is increasing urgency to understand how thermally sensitive species are responding. Acute heating events lasting days to months may elicit acclimation responses to improve performance and survival. However, the coordination of acclimation responses remains largely unknown for most stenothermal species. We documented the chronology of 18 metabolic and cardiorespiratory changes that occur in the gills, blood, spleen, and muscles when tropical coral reef fishes are thermally stressed (+3.0°C above ambient). Using representative coral reef fishes (Caesio cuning and Cheilodipterus quinquelineatus) separated by >100 million years of evolution and …


Nuclear Niño Response Observed In Simulations Of Nuclear War Scenarios, Joshua Coupe, Samantha Stevenson, Nicole S. Lovenduski, Tyler Rohr, Cheryl S. Harrison, Alan Robock, Holly Olivarez, Charles G. Bardeen, Owen B. Toon Jan 2021

Nuclear Niño Response Observed In Simulations Of Nuclear War Scenarios, Joshua Coupe, Samantha Stevenson, Nicole S. Lovenduski, Tyler Rohr, Cheryl S. Harrison, Alan Robock, Holly Olivarez, Charles G. Bardeen, Owen B. Toon

School of Earth, Environmental, & Marine Sciences Faculty Publications

The climate impacts of smoke from fires ignited by nuclear war would include global cooling and crop failure. Facing increased reliance on ocean-based food sources, it is critical to understand the physical and biological state of the post-war oceans. Here we use an Earth system model to simulate six nuclear war scenarios. We show that global cooling can generate a large, sustained response in the equatorial Pacific, resembling an El Niño but persisting for up to seven years. The El Niño following nuclear war, or Nuclear Niño, would be characterized by westerly trade wind anomalies and a shutdown of equatorial …


Evaluating The Use Of Marine Protected Areas By Endangered Species: A Habitat Selection Approach, Kelsey E. Roberts, Brian J. Smith, Derek Burkholder, Kristen M. Hart Jan 2021

Evaluating The Use Of Marine Protected Areas By Endangered Species: A Habitat Selection Approach, Kelsey E. Roberts, Brian J. Smith, Derek Burkholder, Kristen M. Hart

Marine & Environmental Sciences Faculty Articles

1. Optimizing the design of marine protected area (MPA) networks for the conservation of migratory marine species and their habitats involves a suite of important considerations, such as appropriate scale requirements and the distribution of anthropogenic impacts. Often, a fundamental component of the conservation planning process is delineating areas of high use or high biodiversity within a region of interest.

2. However, basing conservation strategies off merely the number of individuals in an ecosystem is outdated and potentially subject to arbitrary thresholds. To be effective at protecting marine megafauna, MPAs would ideally encompass habitats used by focal species. Through satellite-tracking …


A Multi-Modal Approach To Measuring Particulate Iron Speciation In Buoyant Hydrothermal Plumes, Brandy D. Stewart, Jeffry V. Sorensen, Kathleen Wendt, Jason B. Sylvan, Christopher R. German, Karthik Anantharaman, Gregory J. Dick, John A. Breier, Brandy M. Toner Jan 2021

A Multi-Modal Approach To Measuring Particulate Iron Speciation In Buoyant Hydrothermal Plumes, Brandy D. Stewart, Jeffry V. Sorensen, Kathleen Wendt, Jason B. Sylvan, Christopher R. German, Karthik Anantharaman, Gregory J. Dick, John A. Breier, Brandy M. Toner

School of Earth, Environmental, & Marine Sciences Faculty Publications

Processes active within buoyant hydrothermal plumes are expected to modulate the flux of elements, such as Fe, to the deep ocean; however, they are yet to be described in a comprehensive manner through observations or models. In this study, we compare observed particulate Fe (pFe) speciation with thermodynamic (equilibrium) reaction path modeling for three vent fields in the Eastern Lau Spreading Center (ELSC). At each site, particles were collected from the buoyant rising portion of hydrothermal plumes using in situ filtration with a Remotely Operated Vehicle. Filter bound particles were analyzed by synchrotron micro-probe X-ray fluorescence mapping (XRF), X-ray diffraction …


Late Afternoon Seasonal Transition To Dissolution In A Coral Reef: An Early Warning Of A Net Dissolving Ecosystem?, Laura Stoltenberg, Kai G. Schulz, Coulson A. Lantz, Tyler Cyronak, Bradley D. Eyre Jan 2021

Late Afternoon Seasonal Transition To Dissolution In A Coral Reef: An Early Warning Of A Net Dissolving Ecosystem?, Laura Stoltenberg, Kai G. Schulz, Coulson A. Lantz, Tyler Cyronak, Bradley D. Eyre

Marine & Environmental Sciences Faculty Articles

There are concerns that reefs will transition from net calcifying to net dissolving in the near future due to decreasing calcification and increasing dissolution rates. Here we present in situ rates of net ecosystem calcification (NEC) and net ecosystem production (NEP) on a coral reef flat using a slack-water approach. Up until dusk, the reef was net calcifying in most months but shifted to net dissolution in austral summer, coinciding with high respiration rates and a lower aragonite saturation state (Ωarag). The estimated sediment contribution to NEC ranged from 8 – 21 % during the day and 45 …


Autonomous In Situ Calibration Of Ion‐Sensitive Field Effect Transistor Ph Sensors, Philip J. Bresnahan, Yuichiro Takeshita, Taylor Wirth, Todd R. Martz, Tyler Cyronak, Rebecca Albright, Kennedy Wolfe, Joseph K. Warren, Keaton Mertz Jan 2021

Autonomous In Situ Calibration Of Ion‐Sensitive Field Effect Transistor Ph Sensors, Philip J. Bresnahan, Yuichiro Takeshita, Taylor Wirth, Todd R. Martz, Tyler Cyronak, Rebecca Albright, Kennedy Wolfe, Joseph K. Warren, Keaton Mertz

Marine & Environmental Sciences Faculty Articles

Ion‐sensitive field effect transistor‐based pH sensors have been shown to perform well in high frequency and long‐term ocean sampling regimes. The Honeywell Durafet is widely used due to its stability, fast response, and characterization over a large range of oceanic conditions. However, potentiometric pH monitoring is inherently complicated by the fact that the sensors require careful calibration. Offsets in calibration coefficients have been observed when comparing laboratory to field‐based calibrations and prior work has led to the recommendation that an in situ calibration be performed based on comparison to discrete samples. Here, we describe our work toward a self‐calibration apparatus …


An Exceptionally Small New Polycotylid Plesiosaur (Reptilia: Sauropterygia) With Raptorial Eyes From The Western Interior Seaway Of North America, Robert O’Brien Clark Jan 2021

An Exceptionally Small New Polycotylid Plesiosaur (Reptilia: Sauropterygia) With Raptorial Eyes From The Western Interior Seaway Of North America, Robert O’Brien Clark

Theses, Dissertations and Capstones

Polycotylidae is a family of plesiosaurian marine reptiles that evolved during the Early Cretaceous and radiated into multiple genera during the Late Cretaceous, achieving a worldwide distribution. Derived polycotylids of the subclade Polycotylinae have a gracile and elongated rostrum, homodont dentition, an extended mandibular symphysis, and foreshortened temporal fenestrae. In this thesis, I describe a small and highly derived new polycotylid taxon based on three specimens from the Campanian of the Western Interior Seaway in North America. A high number of maxillary teeth, fused neural arches, propodials with well-defined facets, and heavily remodeled cortical bone indicate the specimens are adults, …


Understanding Changes In Marine Communities Through A Discretized, Size-Structured Matrix Model, Courtney Swanson Jan 2021

Understanding Changes In Marine Communities Through A Discretized, Size-Structured Matrix Model, Courtney Swanson

Senior Seminars and Capstones

We study a discretized, size-structured matrix model which calculates population in a marine community over time. A portion of this model is a discretized version of the McKendrick-von Foerster equation, so we spend some time studying the process of discretizing that equation. We implement a mini model containing 10 size categories instead of the original 50, and we looked at how the marine community behaves over 40 years. We discuss some of the challenges when implementing this model.


Unexpected Role Of Communities Colonizing Dead Coral Substrate In The Calcification Of Coral Reefs, Manoela Romanó De Orte, David A. Koweek, Tyler Cyronak, Yuichiro Takeshita, Alyssa Griffin, Kennedy Wolfe, Alina Szmant, Robert Whitehead, Rebecca Albright, Ken Caldeira Jan 2021

Unexpected Role Of Communities Colonizing Dead Coral Substrate In The Calcification Of Coral Reefs, Manoela Romanó De Orte, David A. Koweek, Tyler Cyronak, Yuichiro Takeshita, Alyssa Griffin, Kennedy Wolfe, Alina Szmant, Robert Whitehead, Rebecca Albright, Ken Caldeira

Marine & Environmental Sciences Faculty Articles

Global and local anthropogenic stressors such as climate change, acidification, overfishing, and pollution are expected to shift the benthic community composition of coral reefs from dominance by calcifying organisms to dominance by non-calcifying algae. These changes could reduce the ability of coral reef ecosystems to maintain positive net calcium carbonate accretion. However, relationships between community composition and calcification rates remain unclear. We performed field experiments to quantify the metabolic rates of the two most dominant coral reef substrate types, live coral and dead coral substrate colonized by a mixed algal assemblage, using a novel underwater respirometer. Our results revealed that …


Evaluation Of Wave Attenuation And Shoreline Protection Provided By Us Atlantic And Gulf Coast Oyster Reef Living Shoreline Projects During Storm Events, Matthew Virden, Eric Sparks Jan 2021

Evaluation Of Wave Attenuation And Shoreline Protection Provided By Us Atlantic And Gulf Coast Oyster Reef Living Shoreline Projects During Storm Events, Matthew Virden, Eric Sparks

CREC Publications

No abstract provided.


Bioactive Trace Metals And Their Isotopes As Paleoproductivity Proxies: An Assessment Using Geotraces-Era Data, T. J. Horner, S. H. Little, T. W. Conway, J. R. Farmer, Jennifer E. Hertzberg, D. J. Janssen, A.J.M. Lough, J.L. Mckay, A. Tessin, S.J.G. Galer, S. L. Jaccard, F. Lacan, A. Paytan, K. Wuttig, Geotraces-Pages Biological Productivity Working Group Members Jan 2021

Bioactive Trace Metals And Their Isotopes As Paleoproductivity Proxies: An Assessment Using Geotraces-Era Data, T. J. Horner, S. H. Little, T. W. Conway, J. R. Farmer, Jennifer E. Hertzberg, D. J. Janssen, A.J.M. Lough, J.L. Mckay, A. Tessin, S.J.G. Galer, S. L. Jaccard, F. Lacan, A. Paytan, K. Wuttig, Geotraces-Pages Biological Productivity Working Group Members

OES Faculty Publications

Phytoplankton productivity and export sequester climatically significant quantities of atmospheric carbon dioxide as particulate organic carbon through a suite of processes termed the biological pump. Constraining how the biological pump operated in the past is important for understanding past atmospheric carbon dioxide concentrations and Earth's climate history. However, reconstructing the history of the biological pump requires proxies. Due to their intimate association with biological processes, several bioactive trace metals and their isotopes are potential proxies for past phytoplankton productivity, including iron, zinc, copper, cadmium, molybdenum, barium, nickel, chromium, and silver. Here, we review the oceanic distributions, driving processes, and depositional …


Trichome Lengths Of The Heterocystous N2-Fixing Cyanobacteria In The Tropical Marginal Seas Of The Western North Pacific, Sing-How Tuo, Margaret R. Mulholland, Yukiko Taniuchi, Houng-Yung Chen, Wann-Neng Jane, Yen-Huei Lin, Yuh-Ling Lee Chen Jan 2021

Trichome Lengths Of The Heterocystous N2-Fixing Cyanobacteria In The Tropical Marginal Seas Of The Western North Pacific, Sing-How Tuo, Margaret R. Mulholland, Yukiko Taniuchi, Houng-Yung Chen, Wann-Neng Jane, Yen-Huei Lin, Yuh-Ling Lee Chen

OES Faculty Publications

Calothrix rhizosoleniae and Richelia intracellularis are heterocystous cyanobacteria found in the tropical oceans. C. rhizosoleniae commonly live epiphytically on diatom genera Chaetoceros (C-C) and Bacteriastrum (B-C) while R. intracellularis live endosymbiotically within Rhizosolenia (R-R), Guinardia (G-R), and Hemiaulus (H-R); although, they occasionally live freely (FL-C and FL-R). Both species have much shorter trichomes than the other marine filamentous cyanobacteria such as Trichodesmium spp. and Anabaena gerdii. We investigated the trichome lengths of C. rhizosoleniae and R. intracellularis in the South China Sea (SCS) and the Philippine …


Lagrangian Betweenness As A Measure Of Bottlenecks In Dynamical Systems With Oceanographic Examples, Enrico Ser-Giacomi, Alberto Baudena, Vincent Rossi, Mick Follows, Sophie Clayton, Ruggero Vasile, Cristóbal López, Emilio Hernández-García Jan 2021

Lagrangian Betweenness As A Measure Of Bottlenecks In Dynamical Systems With Oceanographic Examples, Enrico Ser-Giacomi, Alberto Baudena, Vincent Rossi, Mick Follows, Sophie Clayton, Ruggero Vasile, Cristóbal López, Emilio Hernández-García

OES Faculty Publications

The study of connectivity patterns in networks has brought novel insights across diverse fields ranging from neurosciences to epidemic spreading or climate. In this context, betweenness centrality has demonstrated to be a very effective measure to identify nodes that act as focus of congestion, or bottlenecks, in the network. However, there is not a way to define betweenness outside the network framework. By analytically linking dynamical systems and network theory, we provide a trajectory-based formulation of betweenness, called Lagrangian betweenness, as a function of Lyapunov exponents. This extends the concept of betweenness beyond the context of network theory relating hyperbolic …


Marine Phytoplankton Functional Types Exhibit Diverse Responses To Thermal Change, S. I. Anderson, A. D. Barton, Sophie Clayton, S. Dutkiewicz, T. A. Rynearson Jan 2021

Marine Phytoplankton Functional Types Exhibit Diverse Responses To Thermal Change, S. I. Anderson, A. D. Barton, Sophie Clayton, S. Dutkiewicz, T. A. Rynearson

OES Faculty Publications

Marine phytoplankton generate half of global primary production, making them essential to ecosystem functioning and biogeochemical cycling. Though phytoplankton are phylogenetically diverse, studies rarely designate unique thermal traits to different taxa, resulting in coarse representations of phytoplankton thermal responses. Here we assessed phytoplankton functional responses to temperature using empirically derived thermal growth rates from four principal contributors to marine productivity: diatoms, dinoflagellates, cyanobacteria, and coccolithophores. Using modeled sea surface temperatures for 1950-1970 and 2080-2100, we explored potential alterations to each group's growth rates and geographical distribution under a future climate change scenario. Contrary to the commonly applied Eppley formulation, our …


Lipid Markers And Compound-Specific Carbon Isotopes As Diet And Biosynthesis Reflectors In The Northern Neptune Whelk Neptunea Heros, H. Rodger Harvey, Rachel Mcmahon, Karen A. Taylor Jan 2021

Lipid Markers And Compound-Specific Carbon Isotopes As Diet And Biosynthesis Reflectors In The Northern Neptune Whelk Neptunea Heros, H. Rodger Harvey, Rachel Mcmahon, Karen A. Taylor

OES Faculty Publications

A suite of lipid biomarkers plus compound-specific carbon isotopes of major sterols were determined in muscle tissues across increasing sizes of northern Neptune whelks Neptunea heros, developing eggs and potential diets to link trophic patterns, metabolism and carbon sources on the Chukchi Sea shelf. Analysis of primary prey included the northern clam Astarte borealis, water column particulate organic matter (POM) and surface sediments near the collection sites. Sterols specific to major algal groups along with algal-derived polyunsaturated fatty acids (C20:5n-3, C20:4n-3, C22:6n-3) in whelk muscle tissue reflected the importance of algal primary production to benthic consumers and its …


Impact Of Ocean Carbonation On Long-Term Regulation Of Light Harvesting In Eelgrass Zostera Marina, Billur Celebi-Ergin, Richard C. Zimmerman, Victoria J. Hill Jan 2021

Impact Of Ocean Carbonation On Long-Term Regulation Of Light Harvesting In Eelgrass Zostera Marina, Billur Celebi-Ergin, Richard C. Zimmerman, Victoria J. Hill

OES Faculty Publications

Seagrasses account for approximately 10% of the total carbon stored in the ocean, although photosynthesis of seagrasses is carbon-limited at present oceanic pH levels. Therefore, increasing atmospheric CO2 concentration, which results in ocean acidification/carbonation, is predicted to have a positive impact on seagrass productivity. Previous studies have confirmed the positive influence of increasing CO2 on photosynthesis and survival of the temperate eelgrass Zostera marina, but the acclimation of photoprotective mechanisms in this context has not been characterized. We aimed to quantify the long-term impacts of ocean acidification on photochemical control mechanisms that promote photosynthesis while simultaneously protecting …


Detrital Neodymium And (Radio)Carbon As Complementary Sedimentary Bedfellows? The Western Arctic Ocean As A Testbed, Melissa S. Schwab, Jörg D. Rickli, Robie W. Macdonald, H. Rodger Harvey, Negar Haghipour, Timothy I. Eglinton Jan 2021

Detrital Neodymium And (Radio)Carbon As Complementary Sedimentary Bedfellows? The Western Arctic Ocean As A Testbed, Melissa S. Schwab, Jörg D. Rickli, Robie W. Macdonald, H. Rodger Harvey, Negar Haghipour, Timothy I. Eglinton

OES Faculty Publications

Interactions between organic and detrital mineral phases strongly influence both the dispersal and accumulation of terrestrial organic carbon (OC) in continental margin sediments. Yet the complex interplay among biological, chemical, and physical processes limits our understanding of how organo-mineral interactions evolve during sediment transfer and burial. In particular, diverse OC sources and complex hydrodynamic processes hinder the assessment of how the partnership of organic matter and its mineral host evolves during supply and dispersal over continental margins. In this study, we integrate new and compiled sedimentological (grain size, surface area), organic (%OC, OC-δ13C, OC-F14C), and inorganic …