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Articles 661 - 690 of 2804
Full-Text Articles in Marine Biology
Habitat Restoration Restores Underwater Soundscapes And Larval Recruitment, Jack Butler, Emily R. Anderson, Mark J. Butler
Habitat Restoration Restores Underwater Soundscapes And Larval Recruitment, Jack Butler, Emily R. Anderson, Mark J. Butler
Biological Sciences Faculty Publications
Habitat degradation alters many ecosystem processes, and the potential for the reestablishment of ecosystem function through restoration is an area of active research. Among marine systems, coastal habitats are particularly vulnerable to anthropogenic degradation and, in response, are the focus of marine ecological restoration. One of the crucial functions of structurally complex coastal habitats (e.g., saltmarshes, seagrass meadows, kelp forests, coral reefs) are as nurseries to coastal and offshore species, many of whose larvae utilize sound to locate suitable nursery habitat. However, the effect of habitat degradation and subsequent restoration on underwater soundscapes and their function as navigational cues for …
Now You See Me: “First” Records Of The Greater Amberjack Seriola Dumerili At Rapa Nui Range Extension Or Increased Scientific Effort?, Naiti Morales, Amy Rose Coghlan, Erin E. Easton, Alan M. Friedlander, James J. Herlan, Carlos F. Gaymer
Now You See Me: “First” Records Of The Greater Amberjack Seriola Dumerili At Rapa Nui Range Extension Or Increased Scientific Effort?, Naiti Morales, Amy Rose Coghlan, Erin E. Easton, Alan M. Friedlander, James J. Herlan, Carlos F. Gaymer
School of Earth, Environmental, & Marine Sciences Faculty Publications
We report new records of the fisheries-harvested subtropical greater amberjack Seriola dumerili for the south-east Pacific Ocean. Previously, only one species of Seriola (the yellowtail amberjack Seriola lalandi) was scientifically recorded for Rapa Nui (also known as Easter Island) despite local fishers' asserting that three Seriola morphotypes are found in the region. Here we present the first 'scientific record' of what could be a pre-existing (albeit transient) species of the Rapa Nui ecoregion. Establishing the existing range limits of commercially and ecologically valuable species is key for observing climate-driven distribution shifts, and the inclusion of traditional ecological knowledge is likely …
Monitoring Extinction Risk And Threats Of The World's Fishes Based On The Sampled Red List Index, Rafael Miranda, Imanol Miqueleiz, William Darwall, Catherine Sayer, Nicholas K. Dulvy, Kent E. Carpenter, Beth Polidoro, Nadia Dewhurst-Richman, Caroline Pollock, Craig Hilton-Taylor, Robin Freeman, Ben Collen, Monika Böhm
Monitoring Extinction Risk And Threats Of The World's Fishes Based On The Sampled Red List Index, Rafael Miranda, Imanol Miqueleiz, William Darwall, Catherine Sayer, Nicholas K. Dulvy, Kent E. Carpenter, Beth Polidoro, Nadia Dewhurst-Richman, Caroline Pollock, Craig Hilton-Taylor, Robin Freeman, Ben Collen, Monika Böhm
Biological Sciences Faculty Publications
Global biodiversitytargets require us to identify species at risk of extinction and quantify status and trends of biodiversity. The Red List Index (RLI) tracks trends in the conservation status of entire species groups over time by monitoring changes in categories assigned to species. Here, we calculate this index for the world’s fishes in 2010, using a sampled approach to the RLI based on a randomly selected sample of 1,500 species, and also present RLI splits for freshwater and marine systems separately. We further compare specific traits of a worldwide fish list to our sample to assess its representativeness. Overall, 15.1% …
Reducing Adverse Impacts Of Amazon Hydropower Expansion, Alexander S. Flecker, Qinru Shi, Rafael M. Almeida, Héctor Angarita, Jonathan M. Gomes-Selman, Roosevelt García-Villacorta, Suresh A. Sethi, Steven A. Thomas, N Leroy Poff, Bruce R. Forsberg
Reducing Adverse Impacts Of Amazon Hydropower Expansion, Alexander S. Flecker, Qinru Shi, Rafael M. Almeida, Héctor Angarita, Jonathan M. Gomes-Selman, Roosevelt García-Villacorta, Suresh A. Sethi, Steven A. Thomas, N Leroy Poff, Bruce R. Forsberg
School of Earth, Environmental, & Marine Sciences Faculty Publications
Proposed hydropower dams at more than 350 sites throughout the Amazon require strategic evaluation of trade-offs between the numerous ecosystem services provided by Earth's largest and most biodiverse river basin. These services are spatially variable, hence collective impacts of newly built dams depend strongly on their configuration. We use multiobjective optimization to identify portfolios of sites that simultaneously minimize impacts on river flow, river connectivity, sediment transport, fish diversity, and greenhouse gas emissions while achieving energy production goals. We find that uncoordinated, dam-by-dam hydropower expansion has resulted in forgone ecosystem service benefits. Minimizing further damage from hydropower development requires considering …
The Effect Of Marine Snow Particle Distribution On The Foraging Behavior Of Calanus Pacificus, Elena Beckhaus
The Effect Of Marine Snow Particle Distribution On The Foraging Behavior Of Calanus Pacificus, Elena Beckhaus
Theses
Marine snow is a major component of the biological pump, through which carbon is exported to the deep ocean. The sinking of marine snow can be disrupted by organisms, including many species of zooplankton that ingest or break up aggregates. These processes can have important impacts on planktonic food web dynamics and carbon export. Marine snow can have vertically patchy distributions, occurring in thin layers, which may further affect interactions with zooplankton. In this lab-based study, we examined how the presence of a marine snow layer affects copepod behavior and ingestion.
We conducted a series of experiments in which copepods …
Reef Sediments Can Act As A Stony Coral Tissue Loss Disease Vector, Michael S. Studivan, Ashley M. Rossin, Ewelina Rubin, Nash Soderberg, Daniel M. Holstein, Ian C. Enochs
Reef Sediments Can Act As A Stony Coral Tissue Loss Disease Vector, Michael S. Studivan, Ashley M. Rossin, Ewelina Rubin, Nash Soderberg, Daniel M. Holstein, Ian C. Enochs
Faculty Publications
Stony coral tissue loss disease (SCTLD) was first observed in 2014 near Virginia Key in Miami-Dade County, Florida. Field sampling, lab experiments, and modeling approaches have suggested that reef sediments may play a role in SCTLD transmission, though a positive link has not been tested experimentally. We conducted an ex situ transmission assay using a statistically-independent disease apparatus to test whether reef sediments can transmit SCTLD in the absence of direct contact between diseased and healthy coral tissue. We evaluated two methods of sediment inoculation: batch inoculation of sediments collected from southeast Florida using whole colonies of diseased Montastraea cavernosa, …
Light-Driven Dynamics Between Calcification And Production In Functionally Diverse Coral Reef Calcifiers, Jennifer Mallon, Tyler Cyronak, Emily R. Hall, Anastazia T. Banaszak, Dan A. Exton, Adrian M. Bass
Light-Driven Dynamics Between Calcification And Production In Functionally Diverse Coral Reef Calcifiers, Jennifer Mallon, Tyler Cyronak, Emily R. Hall, Anastazia T. Banaszak, Dan A. Exton, Adrian M. Bass
Marine & Environmental Sciences Faculty Articles
Coral reef metabolism underpins ecosystem function and is defined by the processes of photosynthesis, respiration, calcification, and calcium carbonate dissolution. However, the relationships between these physiological processes at the organismal level and their interactions with light remain unclear. We examined metabolic rates across a range of photosynthesising calcifiers in the Caribbean: the scleractinian corals Acropora cervicornis, Orbicella faveolata, Porites astreoides, and Siderastrea siderea, and crustose coralline algae (CCA) under varying natural light conditions. Net photosynthesis and calcification showed a parabolic response to light across all species, with differences among massive corals, branching corals, and CCA that …
Detecting The Feeding Habitat Zone Of Albacore Tuna (Thunnus Alalunga) In The Southern Indian Ocean Using Multisatellite Remote Sensing Data, Sandipan Mondal, Yang-Chi Lan, Ming-An Lee, Yi-Chen Wang, Bambang Semedi, Wan-Ya Su
Detecting The Feeding Habitat Zone Of Albacore Tuna (Thunnus Alalunga) In The Southern Indian Ocean Using Multisatellite Remote Sensing Data, Sandipan Mondal, Yang-Chi Lan, Ming-An Lee, Yi-Chen Wang, Bambang Semedi, Wan-Ya Su
Journal of Marine Science and Technology–Taiwan
Remote sensing is an effective method for identifying potential feeding habitat zones. Spatial and temporal distribution patterns of albacore (ALB) tuna were studied using Taiwan longline fisheries data from 2009 to 2014. A generalized additive model (GAM) was used to compile a fishery database and statistically explore the relationship between distribution and environmental factors. Sea surface temperature (SST), sea surface chlorophyll-a concentration (SSC), sea surface salinity (SSS), sea surface height (SSH), mixed layer depth (MLD), and eddy kinetic energy (EKE) were examined. The results indicated SST as the largest contributor on ALB distribution, followed by SSS and SSC. Catches per …
Japanese Consumer Preference For Raw Fish: Best–Worst Scaling Method, Takahiro Sajiki, Yu-Heng Lu
Japanese Consumer Preference For Raw Fish: Best–Worst Scaling Method, Takahiro Sajiki, Yu-Heng Lu
Journal of Marine Science and Technology–Taiwan
Given the declining consumption of fish and shellfish in Japan, it is essential to better understand consumer needs to design policies that increase consumption. Therefore, we clarify the relative degree of importance Japanese consumers place on various attributes of raw fish during purchase based on a questionnaire survey employing best–worst scaling. We find that consumers prioritize freshness, price, taste, appearance, safety, seasonality, ease of cooking and eating, nutrition, origin, wild fish, and effect on natural environment and ecosystem, in that order. Wild fish has unexpectedly low importance, although Japanese consumers conventionally purchase captured fishery products rather than cultured ones. The …
Diel Vertical Distribution Patterns Of Pelagic Fish Larvae In Yilan Bay, Taiwan, Yi-Chen Wang, Su-Chen Tsai, Wen-Yu Chen
Diel Vertical Distribution Patterns Of Pelagic Fish Larvae In Yilan Bay, Taiwan, Yi-Chen Wang, Su-Chen Tsai, Wen-Yu Chen
Journal of Marine Science and Technology–Taiwan
To study the diel migration distribution of larval fish in an area adjacent to the Kuroshio Current, samples were collected from six depths by using a Motoda horizontal net at a fixed station in Yilan Bay on July 30 and 31, 2007. A total of 591 larval fish were collected and assigned to at least 34 families and 57 species. The first five dominant species were Benthosama pterotum (40.95%), Diaphus B type (12.18%), Callionymidae spp. (8.46%), Gobiidae spp. (6.60%), and Apogonidae spp. (4.0%). The density of larval fish varied across time. The maximum larval density was 1220.34 individuals/1000 m3 at …
Long-Term Variation Of Sea Surface Temperature In Relation To Sea Level Pressure And Surface Wind Speed In Southern Indian Ocean, Sandipan Mondal, Ming-An Lee, Yi-Chen Wang, Bambang Semedi
Long-Term Variation Of Sea Surface Temperature In Relation To Sea Level Pressure And Surface Wind Speed In Southern Indian Ocean, Sandipan Mondal, Ming-An Lee, Yi-Chen Wang, Bambang Semedi
Journal of Marine Science and Technology–Taiwan
Sea surface temperature (SST) is an essential parameter associated with fish habitat and changes in oceanic conditions. Long-term SST variation in relation to sea level pressure (SLP) and surface wind speed (SWS) was observed based on the National Oceanic and Atmospheric Administration (NOAA) data of southern Indian Ocean. Mean monthly time series showed that February and November were the warmest and coolest months, respectively. Spatial distribution showed that 0°S–30°S was warm with SST of 20°–30°C, which was higher than that at all other places throughout the year. SLP (> 1010 millibar) and SWS (> 12 m/s) were high at 20°S–40°S …
Economic Conditions For New Entrants In Coastal Fishing In Miyazaki Prefecture, Japan, Takahiro Sajiki, Yu-Heng Lu, Norie Nishiguchi, Sonomi Akamine, Masaharu Nishiguchi
Economic Conditions For New Entrants In Coastal Fishing In Miyazaki Prefecture, Japan, Takahiro Sajiki, Yu-Heng Lu, Norie Nishiguchi, Sonomi Akamine, Masaharu Nishiguchi
Journal of Marine Science and Technology–Taiwan
A significant decrease in the number of fishery workers is be-coming a problem in Japan. For new entrants to become estab-lished in the region, they must be profitable as fishing busi-nesses. Using the case of Miyazaki prefecture in Japan, this paper identifies the economic conditions required to make longline fishing and bottom gillnet fishing profitable by ap-plying the net present value (NPV) method. When operating on 200 days, which is the guideline for new entrants in longline fishing, if the value of investment is less than 44.1% of the minimum required, the investment will not provide positive returns. However, the …
Raw Garlic (Allium Sativum) Improves Nonspecific Immune Responses And Resistance Against Vibrio Alginolyticus Infection In Grouper (Epinephelus Coioides), Huai-Ting Huang, Po-Tsang Lee, Zhen-Hao Liao, Cheng-Ting Huang, Hsiang-Yin Chen, Zhi-Gu Huang, Fan-Hua Nan, Yu-Sheng Wu
Raw Garlic (Allium Sativum) Improves Nonspecific Immune Responses And Resistance Against Vibrio Alginolyticus Infection In Grouper (Epinephelus Coioides), Huai-Ting Huang, Po-Tsang Lee, Zhen-Hao Liao, Cheng-Ting Huang, Hsiang-Yin Chen, Zhi-Gu Huang, Fan-Hua Nan, Yu-Sheng Wu
Journal of Marine Science and Technology–Taiwan
Garlic contains various nutrients and healthful ingredients. The content of garlic products is closely related to their processing methods, and each compound has specific biological effects. Allicin, a heat labile compound, is considered the most important factor in garlic. Garlic powder is commonly prepared by subjecting raw garlic to thermal processing before being grounded into powder,and it is of interest to compare the biological activity of garlic powder with raw garlic in fish. This study investigated immune effects of raw garlic and garlic powder on groupers (Epinephelus coioides). Although raw garlic and garlic powder did not promote growth performance of …
Asymptotic Numerical Solutions For Second-Order Quasilinear Singularly Perturbed Problems, Chein-Shan Liu, Chih-Wen Chang
Asymptotic Numerical Solutions For Second-Order Quasilinear Singularly Perturbed Problems, Chein-Shan Liu, Chih-Wen Chang
Journal of Marine Science and Technology–Taiwan
For a second-order quasilinear singularly perturbed problem under the Dirichlet boundary conditions, we propose a new asymptotic numerical method, which involves two problems: a reduced problem with a one-side boundary condition and a novel boundary layer correction problem with a two-sided boundary condition. Through the introduction of two new variables, both problems are transformed to a set of three first-order initial value problems with zero initial conditions. The Runge–Kutta method is then applied to integrate the differential equations and to determine two unknown terminal values of the new variables until they converge. The modified asymptotic numerical solution satisfies the Dirichlet …
Simulation Of A Ship And Tension Leg Platform Wind Turbine Collision, Jiamin Guo, Yu Zhao, Weigang Chen, Guangeng Zhou
Simulation Of A Ship And Tension Leg Platform Wind Turbine Collision, Jiamin Guo, Yu Zhao, Weigang Chen, Guangeng Zhou
Journal of Marine Science and Technology–Taiwan
Collisions between ships and tension leg platform wind turbines (TLPWTs) result in the TLPWT damage, including tower damage and tension leg breakage. This paper details a collision between a ship and TLPWT simulated using the LS-DYNA software package. During simulation, the behaviors of the water around the ship and of the TLPWT were processed using the constant added mass and the fluid–structure interaction methods, respectively. The results indicate that the energy conversion during collision is generally consistent with the law of conversion of energy, suggesting that the simulation’s calculations are acceptable. The TLPWT simulation results imply that two distinct collisions …
The Influences Of Promising Feedstock Variability On Advanced Biofuel Production: A Review, Cherng-Yuan Lin
The Influences Of Promising Feedstock Variability On Advanced Biofuel Production: A Review, Cherng-Yuan Lin
Journal of Marine Science and Technology–Taiwan
The contribution of biofuels is expected to continuously increase in the global fuel market, as they are environmentally-friendly and provide renewable energy. Four generations of biofuels are categorized and are primarily based on their feedstock sources and the production technologies that are used. The influence of promising feedstock types and the availability on the production technologies and the fuel properties of advanced-generation biofuels are not systematically examined in the literature. Hence, this research extensively reviews the potential impact of feedstock sources and their variability on the production and characteristics of biofuels. The approaches of theoretical analysis and inference referred to …
River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2022., Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Gerry Pinto, Gretchen Bielmyer-Fraser, John Burr, Dale Casamatta, Charles Closmann, Brian P. Zoellner, Ashley Johnson, An-Phong Le, William Penwell, Radha Pyati
River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2022., Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Gerry Pinto, Gretchen Bielmyer-Fraser, John Burr, Dale Casamatta, Charles Closmann, Brian P. Zoellner, Ashley Johnson, An-Phong Le, William Penwell, Radha Pyati
State of the River Report
No abstract provided.
Examining Ecological Succession Of Diatoms In California Current System Cyclonic Mesoscale Eddies, Zuzanna M. Abdala, Sophie Clayton, Sveinn V. Einarsson, Kimberly Powell, Claire P. Till, Tyler H. Coale, P. Dreux Chappell
Examining Ecological Succession Of Diatoms In California Current System Cyclonic Mesoscale Eddies, Zuzanna M. Abdala, Sophie Clayton, Sveinn V. Einarsson, Kimberly Powell, Claire P. Till, Tyler H. Coale, P. Dreux Chappell
OES Faculty Publications
The California Current System is a diatom-dominated region characterized by seasonal coastal upwelling and additional elevated mesoscale activity. Cyclonic mesoscale eddies in the region trap productive coastal waters with their planktonic communities and transport them offshore with limited interaction with surrounding waters, effectively acting as natural mesocosms, where phytoplankton populations undergo ecological succession as eddies age. This study examines diatom community composition within two mesoscale cyclonic eddies that formed in the same region of the California Current System 2 months apart and in the California Current waters surrounding them. The diatom communities were analyzed in the context of shifting environmental …
Photorespiration In Eelgrass (Zostera Marina L.): A Photoprotection Mechanism For Survival In A Co₂-Limited World, Billur Celebi-Ergin, Richard C. Zimmerman, Victoria J. Hill
Photorespiration In Eelgrass (Zostera Marina L.): A Photoprotection Mechanism For Survival In A Co₂-Limited World, Billur Celebi-Ergin, Richard C. Zimmerman, Victoria J. Hill
OES Faculty Publications
Photorespiration, commonly viewed as a loss in photosynthetic productivity of C3 plants, is expected to decline with increasing atmospheric CO2, even though photorespiration plays an important role in the oxidative stress responses. This study aimed to quantify the role of photorespiration and alternative photoprotection mechanisms in Zostera marina L. (eelgrass), a carbon-limited marine C3 plant, in response to ocean acidification. Plants were grown in controlled outdoor aquaria at different [CO2]aq ranging from ~55 (ambient) to ~2121 μM for 13 months and compared for differences in leaf photochemistry by simultaneous measurements of O2 flux and …
A Subsurface Eddy Associated With A Submarine Canyon Increases Availability And Delivery Of Simulated Antarctic Krill To Penguin Foraging Regions, K. Hudson, M. J. Oliver, J. Kohut, Michael S. Dinniman, John M. Klinck, M. A. Cimino, K. S. Bernard, H. Statscewich, W. Fraser
A Subsurface Eddy Associated With A Submarine Canyon Increases Availability And Delivery Of Simulated Antarctic Krill To Penguin Foraging Regions, K. Hudson, M. J. Oliver, J. Kohut, Michael S. Dinniman, John M. Klinck, M. A. Cimino, K. S. Bernard, H. Statscewich, W. Fraser
OES Faculty Publications
The distribution of marine zooplankton depends on both ocean currents and swimming behavior. Many zooplankton perform diel vertical migration (DVM) between the surface and subsurface, which can have different current regimes. If concentration mechanisms, such as fronts or eddies, are present in the subsurface, they may impact zooplankton near-surface distributions when they migrate to near-surface waters. A subsurface, retentive eddy within Palmer Deep Canyon (PDC), a submarine canyon along the West Antarctic Peninsula (WAP), retains diurnal vertically migrating zooplankton in previous model simulations. Here, we tested the hypothesis that the presence of the PDC and its associated subsurface eddy increases …
Simulated Response Of St. Joseph Bay, Florida, Seagrass Meadows And Their Belowground Carbon To Anthropogenic And Climate Impacts, Marie Cindy Lebrasse, Blake A. Schaeffer, Richard C. Zimmerman, Victoria J. Hill, Megan M. Coffer, Peter J. Whitman, Wilson B. Salls, David D. Graybill, Christopher L. Osburn
Simulated Response Of St. Joseph Bay, Florida, Seagrass Meadows And Their Belowground Carbon To Anthropogenic And Climate Impacts, Marie Cindy Lebrasse, Blake A. Schaeffer, Richard C. Zimmerman, Victoria J. Hill, Megan M. Coffer, Peter J. Whitman, Wilson B. Salls, David D. Graybill, Christopher L. Osburn
OES Faculty Publications
Seagrass meadows are degraded globally and continue to decline in areal extent due to human pressures and climate change. This study used the bio-optical model GrassLight to explore the impact of climate change and anthropogenic stressors on seagrass extent, leaf area index (LAI) and belowground organic carbon (BGC) in St. Joseph Bay, Florida, using water quality data and remotely-sensed sea surface temperature (SST) from 2002 to 2020. Model predictions were compared with satellite-derived measurements of seagrass extent and shoot density from the Landsat images for the same period. The GrassLight-derived area of potential seagrass habitat ranged from 36.2 km2 …
Biofilm Harvesters In Coastal Settings Of The Early Palaeozoic, Nora Noffke, M. Gabriela Mángano, Luis A. Buatois
Biofilm Harvesters In Coastal Settings Of The Early Palaeozoic, Nora Noffke, M. Gabriela Mángano, Luis A. Buatois
OES Faculty Publications
The ichnogenera Syringomorpha and Daedalus are here interpreted as products of infaunal biofilm harvesters. This study investigated: (1) Syringomorpha nilssoni and Syringomorpha isp. from the Cambrian Series 2‐Miaolingian Campanario Formation, northwest Argentina; and (2) Daedalus halli from the Floian Grès et Schistes de la Cluse de l’Orb Formation, Montagne Noire, France. Syringomorpha nilssoni occurs in sandy to mixed intertidal to lower shoreface deposits, whereas Syringomorpha isp. in the lower intertidal zone. Daedalus halli occurs in a lagoon and intertidal to lower shoreface sands of a barrier island. Syringomorpha and Daedalus comprise a vertical J‐shaped causative burrow and deep spreite. These …
Tying Policy To System: Does The Ross Sea Region Marine Reserve Protect Transport Pathways Connecting The Life History Of Antarctic Toothfish?, Julian Ashford, Michael Dinniman, Cassandra Brooks, Lian Wei, Guoping Zhu
Tying Policy To System: Does The Ross Sea Region Marine Reserve Protect Transport Pathways Connecting The Life History Of Antarctic Toothfish?, Julian Ashford, Michael Dinniman, Cassandra Brooks, Lian Wei, Guoping Zhu
OES Faculty Publications
A central objective of the Ross Sea region Marine Protected Area (MPA) is to protect areas important to the life cycle of Antarctic toothfish (Dissostichus mawsoni), a top fish predator and by far the region’s most important commercial species. Juvenile toothfish predominate in deep basins along the inner continental shelf, whereas adults are found mostly along the continental slope and spawning areas on the Pacific-Antarctic Ridge. The inner basins connect to the continental slope via glacial troughs and predictable transport along each trough results in exchange with the Antarctic Slope Current as it flows westward. From the slope, …
Bio-Go-Ship: The Time Is Right To Establish Global Repeat Sections Of Ocean Biology, Sophie Clayton, Harriet Alexander, Jason R. Graff, Nicole J. Poulton, Luke R. Thompson, Heather Benway, Emmanuel Boss, Adam Martiny
Bio-Go-Ship: The Time Is Right To Establish Global Repeat Sections Of Ocean Biology, Sophie Clayton, Harriet Alexander, Jason R. Graff, Nicole J. Poulton, Luke R. Thompson, Heather Benway, Emmanuel Boss, Adam Martiny
OES Faculty Publications
In this article, we present Bio-GO-SHIP, a new ocean observing program that will incorporate sustained and consistent global biological ocean observations into the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP). The goal of Bio-GO-SHIP is to produce systematic and consistent biological observations during global ocean repeat hydrographic surveys, with a particular focus on the planktonic ecosystem. Ocean plankton are an essential component of the earth climate system, form the base of the oceanic food web and thereby play an important role in influencing food security and contributing to the Blue Economy. Despite its importance, ocean biology is largely under-sampled in …
Imaging Technologies Build Capacity And Accessibility In Phytoplankton Species Identification Expertise For Research And Monitoring: Lessons Learned During The Covid-19 Pandemic, Sophie Clayton, Leah Gibala-Smith, Kathryn Mogatas, Chanel Flores-Vargas, Kayla Marciniak, Maci Wigginton, Margaret R. Mulholland
Imaging Technologies Build Capacity And Accessibility In Phytoplankton Species Identification Expertise For Research And Monitoring: Lessons Learned During The Covid-19 Pandemic, Sophie Clayton, Leah Gibala-Smith, Kathryn Mogatas, Chanel Flores-Vargas, Kayla Marciniak, Maci Wigginton, Margaret R. Mulholland
OES Faculty Publications
As primary producers, phytoplankton play an integral role in global biogeochemical cycles through their production of oxygen and fixation of carbon. They also provide significant ecosystem services, by supporting secondary production and fisheries. Phytoplankton biomass and diversity have been identified by the Global Ocean Observing System (GOOS) as Essential Ocean Variables (EOVs), properties that need to be monitored to better understand and predict the ocean system. Phytoplankton identification and enumeration relies on the skills and expertise of highly trained taxonomic analysts. The training of new taxonomic analysts is intensive and requires months to years of supervised training before an analyst …
The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 1. Model Development And Verification, Daphne M. Munroe, Eric N. Powell, John M. Klinck, Andrew M. Scheld, Sarah Borsetti, Jennifer Beckensteiner, Eileen E. Hofmann
The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 1. Model Development And Verification, Daphne M. Munroe, Eric N. Powell, John M. Klinck, Andrew M. Scheld, Sarah Borsetti, Jennifer Beckensteiner, Eileen E. Hofmann
CCPO Publications
Competing pressures imposed by climate-related warming and offshore development have created a need for quantitative approaches that anticipate fisheries responses to these challenges. This study used a spatially explicit, ecological-economic agent-based model integrating dynamics associated with Atlantic surfclam stock biology, decision-making behavior of fishing vessel captains, and fishing fleet behavior to simulate stock biomass, and fishing vessel catch, effort and landings. Simulations were implemented using contemporary Atlantic surfclam stock distributions and characteristics of the surfclam fishing fleet. Simulated distribution of fishable surfclam biomass was determined by a spatially varying mortality rate, fishing by the fleet was controlled by captain decisions …
Fish And Invertebrate Use Of Restored Vs. Natural Oyster Reefs In A Shallow Temperate Latitude Estuary, Jonathan H. Grabowski, Christopher J. Baillie, Adam Baukus, Rachael Carlyle, F. Joel Fodrie, Rachel K. Gittman, A. Randall Hughes, David L. Kimbro, Juhyung Lee, Hunter S. Lenihan, Sean P. Powers, Kevin Sullivan
Fish And Invertebrate Use Of Restored Vs. Natural Oyster Reefs In A Shallow Temperate Latitude Estuary, Jonathan H. Grabowski, Christopher J. Baillie, Adam Baukus, Rachael Carlyle, F. Joel Fodrie, Rachel K. Gittman, A. Randall Hughes, David L. Kimbro, Juhyung Lee, Hunter S. Lenihan, Sean P. Powers, Kevin Sullivan
University Faculty and Staff Publications
Coastal marine habitats continue to be degraded, thereby compelling largescale restoration in many parts of the world. Whether restored habitats function similarly to natural habitats and fully recover lost ecosystem services is unclear. In estuaries, oyster reefs have been degraded by multiple anthropogenic activities including destructive fishing practices and reduced water quality, motivating restoration to maintain oyster fisheries and other ecosystem services, often at relatively high cost. We compared fish and invertebrate communities on recently restored (0–1 year post-restoration), older restored (3–4 years post-restoration), and natural oyster reefs to determine if and when restored reefs support functionally similar faunal communities. …
Nutrient Improvements In Chesapeake Bay: Direct Effect Of Load Reductions And Implications For Coastal Management, Rebecca R. Murphy, Jennifer Keisman, Jon Harcum, Renee R. Karrh, Mike Lane, Elgin S. Perry, Qian Zhang
Nutrient Improvements In Chesapeake Bay: Direct Effect Of Load Reductions And Implications For Coastal Management, Rebecca R. Murphy, Jennifer Keisman, Jon Harcum, Renee R. Karrh, Mike Lane, Elgin S. Perry, Qian Zhang
Biological Sciences Faculty Publications
In Chesapeake Bay in the United States, decades of management efforts have resulted in modest reductions of nutrient loads from the watershed, but the corresponding improvements in estuarine water quality have not consistently followed. Generalized additive models were used to directly link river flows and nutrient loads from the watershed to nutrient trends in the estuary on a station-by-station basis, which allowed for identification of exactly when and where responses are happening. Results show that Chesapeake Bay’s total nitrogen and total phosphorus conditions are mostly improving after accounting for variation in freshwater flow. Almost all of these improving nutrient concentrations …
Mismatches In Scale Between Highly Mobile Marine Megafauna And Marine Protected Areas, Melinda G. Conners, Nicholas B. Sisson, Pierre D. Agamboue, Philip W. Atkinson, Alastair M.M. Baylis, Scott R. Benson, Barbara A. Block, Steven J. Bograd, Pablo Bordino, W. D. Bowen, Paul Brickle, Ignacio M. Bruno, Victoria González Carman, Cory D. Champagne, Daniel E. Crocker, Daniel P. Costa, Tiffany M. Dawson, Tomohiro Deguchi, Heidi Dewar, Philip D. Doherty, Tomo Eguchi, Angela Formia, Brendan J. Godley, Rachel T. Graham, Christian Gredzens, Kristen M. Hart, Lucy A. Hawkes, Suzanne Henderson, Robert William Henry Iii, Luis A. Hückstädt, Ladd M. Irvine, Sarah S. Kienle, Carey E. Kuhn, Damian Lidgard, Stephanie A. Loredo, Bruce R. Mate, Kristian Metcalfe, Jacob Nzegoue, Carmen K. Kouerey Oliwina, Rachel A. Orben, Kiyoaki Ozaki, Richard Parnell, Elizabeth P. Pike, Patrick W. Robinson, Howard C. Rosenbaum, Fumio Sato, Scott A. Shaffer, Donna J. Shaver, Samantha E. Simmons, Brian J. Smith, Guy-Philippe Sounguet, Robert M. Suryan, David R. Thompson, Megan Tierney, Dominic Tilley, Hillary S. Young, Victoria Warwick-Evans, Michael J. Weise, Randall S. Wells, Bradley P. Wilkinson, Matthew J. Witt, Sarah M. Maxwell
Mismatches In Scale Between Highly Mobile Marine Megafauna And Marine Protected Areas, Melinda G. Conners, Nicholas B. Sisson, Pierre D. Agamboue, Philip W. Atkinson, Alastair M.M. Baylis, Scott R. Benson, Barbara A. Block, Steven J. Bograd, Pablo Bordino, W. D. Bowen, Paul Brickle, Ignacio M. Bruno, Victoria González Carman, Cory D. Champagne, Daniel E. Crocker, Daniel P. Costa, Tiffany M. Dawson, Tomohiro Deguchi, Heidi Dewar, Philip D. Doherty, Tomo Eguchi, Angela Formia, Brendan J. Godley, Rachel T. Graham, Christian Gredzens, Kristen M. Hart, Lucy A. Hawkes, Suzanne Henderson, Robert William Henry Iii, Luis A. Hückstädt, Ladd M. Irvine, Sarah S. Kienle, Carey E. Kuhn, Damian Lidgard, Stephanie A. Loredo, Bruce R. Mate, Kristian Metcalfe, Jacob Nzegoue, Carmen K. Kouerey Oliwina, Rachel A. Orben, Kiyoaki Ozaki, Richard Parnell, Elizabeth P. Pike, Patrick W. Robinson, Howard C. Rosenbaum, Fumio Sato, Scott A. Shaffer, Donna J. Shaver, Samantha E. Simmons, Brian J. Smith, Guy-Philippe Sounguet, Robert M. Suryan, David R. Thompson, Megan Tierney, Dominic Tilley, Hillary S. Young, Victoria Warwick-Evans, Michael J. Weise, Randall S. Wells, Bradley P. Wilkinson, Matthew J. Witt, Sarah M. Maxwell
Biological Sciences Faculty Publications
Marine protected areas (MPAs), particularly large MPAs, are increasing in number and size around the globe in part to facilitate the conservation of marine megafauna under the assumption that large-scale MPAs better align with vagile life histories; however, this alignment is not well established. Using a global tracking dataset from 36 species across five taxa, chosen to reflect the span of home range size in highly mobile marine megafauna, we show most MPAs are too small to encompass complete home ranges of most species. Based on size alone, 40% of existing MPAs could encompass the home ranges of the smallest …
Unified Methods In Collecting, Preserving, And Archiving Coral Bleaching And Restoration Specimens To Increase Sample Utility And Interdisciplinary Collaboration, Rebecca Vega Thurber, Emily R. Schmeltzer, Andréa G. Grottoli, Robert Van Woesik, Robert J. Toonen, Mark Warner, Kerri L. Dobson, Rowan H. Mclachlan, Katie Barott, Daniel J. Barshis, Justin Baumann, Leila Chapron, David J. Combosch, Adrienne M.S. Correa, Thomas M. Decarlo, Mary Hagedorn, Laetitia Hédouin, Kenneth Hoadley, Thomas Felis, Christine Ferrier-Pagès, Carly Kenkel, Ilsa B. Kuffner, Jennifer Matthews, Mónica Medina, Christopher Meyer, Corinna Oster, James Price, Hollie M. Putnam, Yvonne Sawall
Unified Methods In Collecting, Preserving, And Archiving Coral Bleaching And Restoration Specimens To Increase Sample Utility And Interdisciplinary Collaboration, Rebecca Vega Thurber, Emily R. Schmeltzer, Andréa G. Grottoli, Robert Van Woesik, Robert J. Toonen, Mark Warner, Kerri L. Dobson, Rowan H. Mclachlan, Katie Barott, Daniel J. Barshis, Justin Baumann, Leila Chapron, David J. Combosch, Adrienne M.S. Correa, Thomas M. Decarlo, Mary Hagedorn, Laetitia Hédouin, Kenneth Hoadley, Thomas Felis, Christine Ferrier-Pagès, Carly Kenkel, Ilsa B. Kuffner, Jennifer Matthews, Mónica Medina, Christopher Meyer, Corinna Oster, James Price, Hollie M. Putnam, Yvonne Sawall
Biological Sciences Faculty Publications
Coral reefs are declining worldwide primarily because of bleaching and subsequent mortality resulting from thermal stress. Currently, extensive efforts to engage in more holistic research and restoration endeavors have considerably expanded the techniques applied to examine coral samples. Despite such advances, coral bleaching and restoration studies are often conducted within a specific disciplinary focus, where specimens are collected, preserved, and archived in ways that are not always conducive to further downstream analyses by specialists in other disciplines. This approach may prevent the full utilization of unexpended specimens, leading to siloed research, duplicative efforts, unnecessary loss of additional corals to research …