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Articles 601 - 630 of 855
Full-Text Articles in Marine Biology
Determination Of Total Dissolved Cobalt In Uv-Irradiated Seawater Using Flow Injection With Chemiluminescence Detection, Rachel U. Shelley, Bernhard Zachhuber, Peter N. Sedwick, Paul J. Worsfold, Maeve C. Lohan
Determination Of Total Dissolved Cobalt In Uv-Irradiated Seawater Using Flow Injection With Chemiluminescence Detection, Rachel U. Shelley, Bernhard Zachhuber, Peter N. Sedwick, Paul J. Worsfold, Maeve C. Lohan
OES Faculty Publications
A sensitive flow-injection method with chemiluminescence detection (FI-CL) for the determination of dissolved cobalt in open ocean samples, suitable for shipboard use has been developed. To date, FI methods for dissolved cobalt have been used only in coastal and estuarine waters. Therefore, significant modifications to existing methods were required, including (1) the use of a commercially available iminodiacetate (IDA) resin (Toyopearl AF-chelate 650M) in place of resin immobilized 8-hydroxyquinoline for online preconcentration and matrix removal, (2) the introduction of acidified ammonium acetate (pH 4) as a column-conditioning step before sample loading and rinse steps, and most importantly, (3) UV irradiation …
Modeling The Vertical Distributions Of Downwelling Plane Irradiance And Diffuse Attenuation Coefficient In Optically Deep Waters, X. J. Pan, Richard C. Zimmerman
Modeling The Vertical Distributions Of Downwelling Plane Irradiance And Diffuse Attenuation Coefficient In Optically Deep Waters, X. J. Pan, Richard C. Zimmerman
OES Faculty Publications
The diffuse attenuation coefficient Kᵈ is critical to understand the vertical distribution of underwater downwelling irradiance (Eᵈ). Theoretically Eᵈ is composed of the direct solar beam and the diffuse sky irradiance. Applying the statistical results from Hydrolight radiative transfer simulations, Kᵈ is expressed into a mathematical equation (named as PZ06) integrated from the contribution of direct solar beam and diffuse sky irradiance with the knowledge of sky and water conditions. The percent root mean square errors (RMSE) for the vertical distribution of Eᵈ(z) under various sky and water conditions between PZ06 and Hydrolight results are typically less than 4%. Field …
The Path To Preservation: Using Proteomics To Decipher The Fate Of Diatom Proteins During Microbial Degradation, Brook L. Nunn, Ying S. Ting, Lars Malmström, Yihsuan S. Tsai, Angela Aquier, David R. Goodlett, H. Rodger Harvey
The Path To Preservation: Using Proteomics To Decipher The Fate Of Diatom Proteins During Microbial Degradation, Brook L. Nunn, Ying S. Ting, Lars Malmström, Yihsuan S. Tsai, Angela Aquier, David R. Goodlett, H. Rodger Harvey
OES Faculty Publications
We drew upon recent advances in tandem mass spectrometry-based proteomic analyses in order to examine the proteins that remain after a diatom bloom enters the stationary phase, precipitates out of the photic zone, and is subjected to microbial degradation over a 23-d period within a controlled laboratory environment. Proteins were identified from tandem mass spectra searched against three different protein databases in order to track proteins from Thalassiosira pseudonana and any potential bacterial contributions. A rapid loss of diatom protein was observed over the incubation period; 75% of the proteins initially identified were not detected after 72 h of exposure …
Effect Of The Heterotrophic Dinoflagellate Oxyrrhis Marina And The Copepod Acartia Tonsa On Vertical Carbon Flux In And Around Thin Layers Of The Phytoflagellate Isochrysis Galbana, A. B. Bochdansky, S. M. Bollens, G. C. Rollwagen-Bollens, A. H. Gibson
Effect Of The Heterotrophic Dinoflagellate Oxyrrhis Marina And The Copepod Acartia Tonsa On Vertical Carbon Flux In And Around Thin Layers Of The Phytoflagellate Isochrysis Galbana, A. B. Bochdansky, S. M. Bollens, G. C. Rollwagen-Bollens, A. H. Gibson
OES Faculty Publications
Dynamics of material and energy flow through food webs differ when resources are allocated in patches in comparison to situations in which the same resources are distributed evenly throughout the water column. Thin layers of plankton are special cases of such resource patches. While previous studies have predominantly focused on the response of organisms to these layers, we investigated how 2 types of grazers in turn affect thin layers. In an experimental study with tightly controlled environmental conditions, we monitored the redistribution of particulate organic (POC), dissolved organic (DOC) and inorganic (DIC) carbon from thin layers of Isochrysis galbana. …
Role Of Macroscopic Particles In Deep-Sea Oxygen Consumption, Alexander B. Bochdansky, Hendrik M. Van Aken, Gerhard J. Herndl
Role Of Macroscopic Particles In Deep-Sea Oxygen Consumption, Alexander B. Bochdansky, Hendrik M. Van Aken, Gerhard J. Herndl
OES Faculty Publications
Macroscopic particles (> 500 µg), including marine snow, large migrating zooplankton, and their fast-sinking fecal pellets, represent primary vehicles of organic carbon flux from the surface to the deep sea. In contrast, freely suspended microscopic particles such as bacteria and protists do not sink, and they contribute the largest portion of metabolism in the upper ocean. In bathy- and abyssopelagic layers of the ocean (2,000-6,000 m), however, microscopic particles may not dominate oxygen consumption. In a section across the tropical Atlantic, we show that macroscopic particle peaks occurred frequently in the deep sea, whereas microscopic particles were barely detectable. In …
Summer/Fall 2009, Nsu Oceanographic Center
Changing Fecundity And Reproductive Output In Females Of A Chesapeake Bay Population Of Blue Crab, Callinectes Sapidus, Shannon L. Wells
Changing Fecundity And Reproductive Output In Females Of A Chesapeake Bay Population Of Blue Crab, Callinectes Sapidus, Shannon L. Wells
OES Theses and Dissertations
The Chesapeake Bay blue crab, Callinectes sapidus, is an important species both ecologically and as a fishery. Fishery dependent and independent data indicate that the population declined abruptly in the mid-1990s and has remained low. Previous work prior to the decline in population abundance found a significant relationship between size and fecundity for mature females. As with many heavily fished populations, this population has experienced a reduction in the size at maturity. The objectives of this study were to reassess the fecundity of the population, determine the lipid and protein energy allocated for reproduction, and to examine the concentrations …
Spring 2009, Nsu Oceanographic Center
A Bio-Optical Model For Syringodium Filiforme Canopies, Margaret A. Stoughton
A Bio-Optical Model For Syringodium Filiforme Canopies, Margaret A. Stoughton
OES Theses and Dissertations
Seagrasses are significant ecological and biogeochemical agents in shallow water ecosystems throughout the world. In many regions, seagrass meadows occupy a sufficient fraction of the coastal zone, and generate optical signatures that can be observed from space. Bio-optical models of light absorption and scattering by submerged plant canopies for certain species such as Thalassia testudinum and Zostera marina have successfully modeled the plane irradiance distribution and photosynthesis within the submerged canopies. Syringodium filiforme differs &om T. testudinttm and Z marina, in leaf morphology and canopy architecture. The objective of this study was to develop a radiative transfer model that …
Advances In The Study Of Marine Mammal Predator-Prey Interactions: A Novel Real-Time Visualization Of Independently Collected Echosounder Data Using Geozui4d, Roland J. Arsenault, Ari S. Friedlaender, Elliott L. Hazen, Colin Ware, David N. Wiley
Advances In The Study Of Marine Mammal Predator-Prey Interactions: A Novel Real-Time Visualization Of Independently Collected Echosounder Data Using Geozui4d, Roland J. Arsenault, Ari S. Friedlaender, Elliott L. Hazen, Colin Ware, David N. Wiley
Center for Coastal and Ocean Mapping
No abstract provided.
Winter 2009, Nsu Oceanographic Center
Patterns Of Spiny Lobster (Panulirus Argus) Postlarval Recruitment In The Carribbean: A Crtr Project, Mark J. Butler Iv, Angela M. Mojica, Eloy Sosa-Cordero, Marines Millet, Paul Sanchez-Navarro, Miguel A. Maldonado, Juan Posada, Bladimir Rodriguez, Carlos M. Rivas, Adrian Oviedo, Marcio Arrone, Martha Prada, Nick Bach, Nilda Jimenez, Maria Del Carmen Garcia-Rivas, Kirah Forman, Donald C. Behringer Jr., Thomas Matthews, Claire Paris, Robert Cowen
Patterns Of Spiny Lobster (Panulirus Argus) Postlarval Recruitment In The Carribbean: A Crtr Project, Mark J. Butler Iv, Angela M. Mojica, Eloy Sosa-Cordero, Marines Millet, Paul Sanchez-Navarro, Miguel A. Maldonado, Juan Posada, Bladimir Rodriguez, Carlos M. Rivas, Adrian Oviedo, Marcio Arrone, Martha Prada, Nick Bach, Nilda Jimenez, Maria Del Carmen Garcia-Rivas, Kirah Forman, Donald C. Behringer Jr., Thomas Matthews, Claire Paris, Robert Cowen
Biological Sciences Faculty Publications
As part of the Coral Reef Targeted Research (CRTR) Program, a partnership between the Global Environment Facility and the World Bank, our research team examined the recruitment patterns of Caribbean spiny lobster (Panulirus argus) postlarvae among regions in the Caribbean, with a particular focus on Mesoamerica. Our goal was to collect comparable information on postlarval supply among regions and to provide data to test predictions of connectivity generated from a coupled biophysical oceanographic model of lobster larval dispersal. Here we present the results of the postlarval recruitment monitoring program. We monitored the catch of postlarvae on Witham-style collectors …
Regional Characterisation Of Hard-Bottom Nursery Habitat For Juvenile Caribbean Spiny Lobster (Panulirus Argus) Using Rapid Assessment Techniques, Rodney D. Bertelsen, Mark J. Butler Iv, William F. Herrnkind, John H. Hunt
Regional Characterisation Of Hard-Bottom Nursery Habitat For Juvenile Caribbean Spiny Lobster (Panulirus Argus) Using Rapid Assessment Techniques, Rodney D. Bertelsen, Mark J. Butler Iv, William F. Herrnkind, John H. Hunt
Biological Sciences Faculty Publications
Shallow, hard-bottom habitat constitutes approximately 30% of the coastal waters of south Florida, United States, yet it is a chronically understudied feature of the marine seascape in this region. In this study, we characterised the general biogeographic and structural features of shallow benthic hard-bottom communities in the Florida Keys, and related those to the abundance of juvenile Caribbean spiny lobster (Panulirus argus), the target of one of Florida's most economically valuable fisheries. We used rapid assessment techniques to survey more than 100 hard-bottom sites in the Florida Keys to estimate the percentage bottom coverage of vegetation (seagrass and …
Is Seagrass An Important Nursery Habitat For The Caribbean Spiny Lobster, Panulirus Argus, In Florida?, Donald C. Behringer, Mark J. Butler Iv, William Herrnkind, John H. Hunt, Charles A. Acosta, William C. Sharp
Is Seagrass An Important Nursery Habitat For The Caribbean Spiny Lobster, Panulirus Argus, In Florida?, Donald C. Behringer, Mark J. Butler Iv, William Herrnkind, John H. Hunt, Charles A. Acosta, William C. Sharp
Biological Sciences Faculty Publications
Caribbean spiny lobster (Panulirus argus) settle preferentially in macroalgal-covered hard-bottom habitat, but seagrass is more prevalent in Florida (United States) and the Caribbean, so even low settlement of lobsters within seagrass could contribute substantially to recruitment if post-settlement survival and growth were high. We tested the role of seagrass and hard-bottom habitats for P. argus recruitment in three ways. We first explored possible density-dependent regulation of early benthic juvenile lobster survival within cages deployed in seagrass and hard-bottom habitats. Second, we compared settlement and survival of P. argus in both habitats, by comparing the recovery of microwire-tagged early …
Understanding How Disease And Environment Combine To Structure Resistance In Estuarine Bivalve Populations, Eileen E. Hofmann, David Bushek, Susan E. Ford, Ximing Guo, Dale Haidvogel, Dennis Hedgecock, John M. Klinck, Coren Milbury, Diego Narvaez, Eric Powell, Yongping Wang, Zhiren Wang, Liusuo Zhang
Understanding How Disease And Environment Combine To Structure Resistance In Estuarine Bivalve Populations, Eileen E. Hofmann, David Bushek, Susan E. Ford, Ximing Guo, Dale Haidvogel, Dennis Hedgecock, John M. Klinck, Coren Milbury, Diego Narvaez, Eric Powell, Yongping Wang, Zhiren Wang, Liusuo Zhang
CCPO Publications
Delaware Bay oyster (Crassostrea virginica) populations are influenced by two lethal parasites that cause Dermo and MSX diseases. As part of the US National Science Foundation Ecology of Infectious Diseases initiative, a program developed for Delaware Bay focuses on understanding how oyster population genetics and population dynamics interact with the environment and these parasites to structure he host populations, and how these interactions might modified by climate change. Laboratory and field studies undertaken during this program include identifying genes related to MSX and Dermo disease resistance, potential regions for refugia and the mechanisms that allow them to exist, …
Influence Of Irradiance And Iron On The Growth Of Colonial Phaeocystic Antarctica: Implications For Seasonal Bloom Dynamics In The Ross Sea, Antarctica, Nathan S. Garcia, Peter N. Sedwick, Giacomo R. Ditullio
Influence Of Irradiance And Iron On The Growth Of Colonial Phaeocystic Antarctica: Implications For Seasonal Bloom Dynamics In The Ross Sea, Antarctica, Nathan S. Garcia, Peter N. Sedwick, Giacomo R. Ditullio
OES Faculty Publications
Laboratory culture experiments were used to investigate the growth rate of colonial Phaeocystis anarctica as a function of irradiance and dissolved iron concentration. The experiments were conducted with a P. antarctica strain isolated from the southern Ross Sea, Antarctica, and made use of natural, low-iron (P. antarctica attained an average maximum cell-specific growth rate of 0.37 d-1at an irradiance of 68 μE m-2s-1, above which growth rates decreased to 0.27 d-1 at an irradiance of 314 μE m-2s-1. The dependence of growth rate on ambient dissolved iron concentration was …
Thin Layer Formation During Runaway Stratification In The Tidally Dynamic San Francisco Estuary, Alexander B. Bochdansky, Stephen M. Bollens
Thin Layer Formation During Runaway Stratification In The Tidally Dynamic San Francisco Estuary, Alexander B. Bochdansky, Stephen M. Bollens
OES Faculty Publications
During the course of a year, we repeatedly collected high-resolution vertical fluorometer data timed to coincide with a specific state during the tidal cycle. The time (end of the ebb during neap tide) and the location (a deep channel half-way between the Golden Gate and the point of tidally averaged bottom salinity of 2 psu) were chosen with the goal to observe runaway stratification. We consistently found at least one pronounced chlorophyll peak in the water column; however, the vertical location of these peaks varied within three types including surface, bottom and subsurface maxima. Our results showed that heterogeneity of …
Spatial Variation In Otolith Chemistry Of Atlantic Croaker Larvae In The Mid-Atlantic Bight, Jason J. Schaffler, Christian S. Reiss, Cynthia M. Jones
Spatial Variation In Otolith Chemistry Of Atlantic Croaker Larvae In The Mid-Atlantic Bight, Jason J. Schaffler, Christian S. Reiss, Cynthia M. Jones
OES Faculty Publications
Larval Atlantic croaker Micropogonias undulatus (1 to 7 mm in standard length) were collected on the east coast of the United States from North Carolina to Delaware during 2000. We defined 3 water-mass boundaries for potential groups of spawning Atlantic croaker using temperature and salinity measured at each sampling station. We tested the hypothesis that distinct otolith chemistries existed among 3 groups of larval Atlantic croaker collected from these water masses using solution-based inductively coupled plasma-mass spectrometry. Multivariate analysis of variance indicated that otolith chemistry differed significantly among water masses. Using a quadratic discriminant function, we were able to correctly …
Patterns Of Larval Atlantic Croaker Ingress Into Chesapeake Bay, Usa, Jason J. Schaffler, Christian S. Reiss, Cynthia M. Jones
Patterns Of Larval Atlantic Croaker Ingress Into Chesapeake Bay, Usa, Jason J. Schaffler, Christian S. Reiss, Cynthia M. Jones
OES Faculty Publications
We compared ingress patterns of Atlantic croaker Micropogonias undulatus larvae into Chesapeake Bay, USA, with published ingress patterns through barrier island inlets, the accepted model for larval fish ingress. This model asserts that larvae ingress on night flood tides at the flooddominated side of the inlet and at all depths. At the Chesapeake Bay mouth and in the adjacent coastal waters, we compared the distribution of abundance, size, age, and growth rates of croaker prior to ingress, In contrast to the barrier island inlet model, croaker larvae were more abundant at depth than closer to the surface regardless of location. …
Cross-Basin Comparison Of Phosphorus Stress And Nitrogen Fixation In Trichodesmium, Annette M. Hynes, P. Dreux Chappell, Sonya T. Dyhrman, Scott C. Doney, Eric A. Webb
Cross-Basin Comparison Of Phosphorus Stress And Nitrogen Fixation In Trichodesmium, Annette M. Hynes, P. Dreux Chappell, Sonya T. Dyhrman, Scott C. Doney, Eric A. Webb
OES Faculty Publications
We investigated the phosphorus (P) status and N2 fixation rates of Trichodesmium populations from the North Pacific, western South Pacific, and western North Atlantic. Colonies of Trichodesmium were collected and analyzed for endogenous alkaline phosphatase (AP) activity using enzyme-labeled fluorescence ( ELF) and for nitrogenase activity using acetylene reduction. AP hydrolyzes dissolved inorganic phosphate (DIP) from dissolved organic phosphorus and is active in Trichodesmium colonies experiencing P stress. Across multiple stations in the subtropical North and South Pacific, there was low to moderate ELF labeling in Trichodesmium, although labeling was present in other taxa. In contrast, Trichodesmium ELF …
On The Movement Of Beluga Whales In Cook Inlet, Alaska: Simulations Of Tidal And Environmental Impacts Using A Hydrodynamic Inundation Model, Tal Ezer, Roderick Hobbs, Lie-Yauw Oey
On The Movement Of Beluga Whales In Cook Inlet, Alaska: Simulations Of Tidal And Environmental Impacts Using A Hydrodynamic Inundation Model, Tal Ezer, Roderick Hobbs, Lie-Yauw Oey
CCPO Publications
The population of beluga whales in Cook Inlet, Alaska, is in decline, and since 2000 these whales have been under consideration for designation as "endangered" under the Endangered Species Act (and were placed on the list in October 2008, just before this article went to press). In order to study environmental and hydrodynamic impacts on the belugas' movements and survival in the unique habitat of the inlet, a three-dimensional ocean circulation and inundation model is combined with satellite-tracked beluga whale data. Model-wale data comparisons from two whale paths during a five-day period (september 17-21, 2000) covering 10 tidal cycles suggest …
North Shore Bays Benthic Mapping: Groundtruth Studies., Robert M. Cerrato, Lee Holt
North Shore Bays Benthic Mapping: Groundtruth Studies., Robert M. Cerrato, Lee Holt
School of Marine & Atmospheric Sciences Faculty Publications
We combined high-resolution remote sensing techniques with detailed study of the physical and faunal characteristics at point locations in different seafloor environments within the Oyster Bay- Cold Spring Harbor Complex, the Huntington-Northport Bay Complex, and Port Jefferson Harbor, including Conscience Bay. High-resolution backscatter and bathymetric maps created by side scan and multibeam sonar surveys were used to classify the sea bed into provinces. Samples for macrofauna and sediment properties were collected within each province to provide "ground truth" for the acoustic maps. Oyster Bay, Huntington Harbor, and Port Jefferson Harbor were sampled at 40, 38, and 50 locations, respectively, with …
Fall 2008, Nsu Oceanographic Center
Summer 2008, Nsu Oceanographic Center
Spring 2008, Nsu Oceanographic Center
Winter 2008, Nsu Oceanographic Center
Absorption Spectral Slopes And Slope Ratios As Indicators Of Molecular Weight, Source, And Photobleaching Of Chromophoric Dissolved Organic Matter, John R. Helms, Aron Stubbins, Jason D. Ritchie, Elizabeth C. Minor, David J. Kieber, Kenneth Mopper
Absorption Spectral Slopes And Slope Ratios As Indicators Of Molecular Weight, Source, And Photobleaching Of Chromophoric Dissolved Organic Matter, John R. Helms, Aron Stubbins, Jason D. Ritchie, Elizabeth C. Minor, David J. Kieber, Kenneth Mopper
Chemistry & Biochemistry Faculty Publications
A new approach for parameterizing dissolved organic matter ( DOM) ultraviolet-visible absorption spectra is presented. Two distinct spectral slope regions ( 275-295 nm and 350-400 nm) within log-transformed absorption spectra were used to compare DOM from contrasting water types, ranging from wetlands (Great Dismal Swamp and Suwannee River) to photobleached oceanic water ( Atlantic Ocean). On the basis of DOM size-fractionation studies ( ultrafiltration and gel filtration chromatography), the slope of the 275-295- nm region and the ratio of these slopes (SR; 275-295- nm slope : 350-400- nm slope) were related to DOM molecular weight ( MW) and …
The Use Of Extractable Lipofuscin For Age Determination Of Crustaceans: Reply To Sheehy (2008), H. Rodger Harvey, David H. Secor, Se-Jong Ju
The Use Of Extractable Lipofuscin For Age Determination Of Crustaceans: Reply To Sheehy (2008), H. Rodger Harvey, David H. Secor, Se-Jong Ju
OES Faculty Publications
The heterogeneous mixture of metabolic by-products termed lipofuscin (LF) or age pigments has long been known to accumulate in post mitotic cells with increasing age. In crustaceans several approaches have been developed over the years to track LF accumulation and provide a proxy for chronological age. Histological approaches have been traditionally used for LF determination of crustaceans (e.g. Sheehy et al. 1994, Mar Biol 121:237-245), but over the last decade extraction approaches for neural tissues have been introduced (Ju et al. 1999, Mar Ecol Prog Ser 185:171-179) and tested (Ju et al. 2001, Mar Ecol Prog Ser 224:197-205; 2003, Fish …
Otolith Chemistry Indicates Population Structuring By The Antarctic Circumpolar Current, Julian R. Ashford, Cynthia M. Jones, Eileen E. Hofmann, Inigo Everson, Carlos A. Moreno, Guy Duhamel, Richard Williams
Otolith Chemistry Indicates Population Structuring By The Antarctic Circumpolar Current, Julian R. Ashford, Cynthia M. Jones, Eileen E. Hofmann, Inigo Everson, Carlos A. Moreno, Guy Duhamel, Richard Williams
CCPO Publications
Large-scale transport of seawater in ocean currents may generate spatially complex population structure through the advection of life stages of marine fish species. To test this, we compared the chemistry of otolith nuclei from Patagonian toothfish (Dissostichus eleginoides), presently managed as spatially discrete Populations corresponding to fishing management areas along the Antarctic Circumpolar Current (ACC), which transports water eastward around the Southern Ocean. The chemistry of otolith nuclei, laid down during early life, differed significantly between fishing areas Off South America and the Antarctic and between some Antarctic areas. However, we found significant discrepancies from expectation for a …
A Modelling Study Of Developmental Stage And Environmental Variability Effects On Copepod Foraging, Jerry D. Wiggert, Eileen E. Hofmann, Gustav-Adolf Paffenhöfer
A Modelling Study Of Developmental Stage And Environmental Variability Effects On Copepod Foraging, Jerry D. Wiggert, Eileen E. Hofmann, Gustav-Adolf Paffenhöfer
CCPO Publications
We used a stochastic Lagrangian model to study how behaviour contributes to copepod grazing success. The model simulates distinct foraging behaviours of Clausocalanus furcatus, Paracalanus aculeatus, and Oithona plumifera. Three sets of simulations were performed to investigate the effects of (a) prey-size preference; (b) variation in prey-size spectra; and (c) turbulence intensity on these species’ grazing rates. The size preference simulations demonstrate that, compared with copepodites, mature females have cell ingestion rates that are an order of magnitude lower, while carbon uptake is reduced by 35%. A prey spectrum that is skewed towards cells ,<6 >μm promotes copepodite …