Marine Biology Commons^™

Novel Bio-Logging Tool For Studying Fine-Scale Behaviors Of Marine Turtles In Response To Sound, Reny B. Tyson, Wendy Dow Piniak, Camila Domit, David Mann, Michael Hall, Douglas P. Nowacek, Mariana M. P. B. Fuentes

Environmental Studies Faculty Publications

Increases in the spatial scale and intensity of activities that produce marine anthropogenic sound highlight the importance of understanding the impacts and effects of sound on threatened species such as marine turtles. Marine turtles detect and behaviorally respond to low-frequency sounds, however few studies have directly examined their behavioral responses to specific types or intensities of anthropogenic or natural sounds. Recent advances in the development of bio-logging tools, which combine acoustic and fine-scale movement measurements, have allowed for evaluations of animal responses to sound. Here, we describe these tools and present a case study demonstrating the potential application of a …

Can Ecosystem Functional Recovery Be Traced To Decomposition And Nitrogen Dynamics In Estuaries Of The Lower Laguna Madre, Texas?, Mario A. Marquez, Alejandro Fierro-Cabo, Carlos E. Cintra-Buenrostro

School of Earth, Environmental, & Marine Sciences Faculty Publications

The biggest incentive to attempt the restoration and protection of estuaries is their widely acknowledged ecological and economic importance. Assessing estuary health and recovery can most accurately come from examining ecosystem processes. The purpose of this study was to explore the potential of mass loss and nitrogen (N) dynamics during leaf litter decomposition, to detect signs of functional recovery in two estuarine systems in south Texas. Submerged litterbags with black mangrove (Avicennia germinans) leaves were retrieved at various dates over 320 days. Decomposition was about 50% slower in one of the recovering systems compared to a reference site. …

Sorption Of Cr(Iii) And Cr(Vi) To K2mn4o9 Nanomaterial A Study Of The Effect Of Ph, Time, Temperature And Interferences, J. P. Valle, B. Gonzalez, J. Schulz, D. Salinas, U. Romero, Diego F. Gonzalez, Carolina Valdes, J. M. Cantu, Thomas Eubanks, Jason Parsons

School of Earth, Environmental, & Marine Sciences Faculty Publications

A Rancieite type material (K2Mn4O9) nanomaterial was synthesized and tested for the removal of chromium (III) and chromium (VI) from aqueous solutions. The synthesized nanomaterial was characterized using powder XRD and SEM. XRD showed weak diffraction peaks at only at the angles associated with K2Mn4O9. The SEM corroborated that the nanoparticles were present; however, the nanoparticles were clustered into larger aggregates. Batch studies were performed to determine the optimum pH, capacity, time dependency, interferences, and the thermodynamics of the binding. The optimum pH for the binding of Cr(III) and Cr(VI) were determined to be pH 5 and pH 2, respectively. …

Determining Critical Internesting And Foraging Habitats For The Conservation Of Sea Turtles In Gabon, Africa Using Satellite Tracking And Stable Isotope Analysis, Tiffany M. Dawson

Biological Sciences Theses & Dissertations

Understanding the horizontal and vertical habitat of olive ridley sea turtles (Lepidochelys olivacea), a threatened species, is critical for determining regions of protection that may effectively reduce bycatch, the largest threat to this species. Satellite transmitters were used to determine the movement and dive behavior of 21 female olive ridley turtles tagged in Pongara National Park, Gabon during the 2012, 2013, and 2015 nesting seasons. A switching state space model was used to filter the tracking data and categorize the internesting and post-nesting movements. Gridded utilization distribution (UD) home range analysis of tracking data revealed that the entire core habitat …

Modeling The Population Effects Of Hypoxia On Atlantic Croaker (Micropogonias Undulatus) In The Northwestern Gulf Of Mexico: Part 1—Model Description And Idealized Hypoxia, Kenneth A. Rose, Sean Creekmore, Peter Thomas, J. Kevin Craig, Md. Saydur Rahman, Rachael Miller Neilan

School of Earth, Environmental, & Marine Sciences Faculty Publications

We developed a spatially explicit, individual-based model to analyze how hypoxia effects on reproduction, growth, and mortality of Atlantic croaker in the northwestern Gulf of Mexico lead to population-level responses. The model follows the hourly growth, mortality, reproduction, and movement of individuals on a 300 × 800 spatial grid of 1-km² cells for 140 years. Chlorophyll-a concentration, water temperature, and dissolved oxygen (DO) were specified daily for each grid cell and repeated for each year of the simulation. A bioenergetics model was used to represent growth, mortality was assumed stage- and age-dependent, and the movement behavior of juveniles and …

Strong Population Structure Deduced From Genetics, Otolith Chemistry And Parasite Abundances Explains Vulnerability To Localized Fishery Collapse In A Large Sciaenid Fish, Protonibea Diacanthus, Laura Taillebois, Diane P. Barton, David Crook, Thor Saunders, Jonathan Taylor, Mark Hearnden, Richard J. Saunders, Stephen J. Newman, Michael J. Travers, David J. Welch, Alan Greig, Christine Dudgeon, Safia Maher, Jennifer Ovenden

Fisheries Research Articles

As pressure on coastal marine resources is increasing globally, the need to quantitatively assess vulnerable fish stocks is crucial in order to avoid the ecological consequences of stock depletions. Species of Sciaenidae (croakers, drums) are important components of tropical and temperate fisheries and are especially vulnerable to exploitation. The black-spotted croaker, Protonibea diacanthus, is the only large sciaenid in coastal waters of northern Australia where it is targeted by commercial, recreational and indigenous fishers due to its food value and predictable aggregating behaviour. Localized declines in the abundance of this species have been observed, highlighting the urgent requirement by managers …

Modeling The Population Effects Of Hypoxia On Atlantic Croaker (Micropogonias Undulatus) In The Northwestern Gulf Of Mexico: Part 2—Realistic Hypoxia And Eutrophication, Kenneth A. Rose, Sean Creekmore, Dubravko Justić, Peter Thomas, J. Kevin Craig, Rachael Miller Neilan, Lixia Wang, Md Saydur Rahman, David Kidwell

School of Earth, Environmental, & Marine Sciences Faculty Publications

Quantifying the population-level effects of hypoxia on coastal fish species has been challenging. In the companion paper (part 1), we described an individual-based population model (IBM) for Atlantic croaker in the northwestern Gulf of Mexico (NWGOM) designed to quantify the long-term population responses to low dissolved oxygen (DO) concentrations during the summer. Here in part 2, we replace the idealized hypoxia conditions with realistic DO concentrations generated from a 3-dimensional water quality model. Three years were used and randomly arranged into a time series based on the historical occurrence of mild, intermediate, and severe hypoxia year types.We also used another …

Larval Rockfish Diversity Abundance Dynamics In Association With A Marine Protected Area In The Southern California Bight, Dustin Chen

Theses

Marine protected areas (MPAs) are areas aimed at protecting natural and cultural resources that are often proposed as a way to alleviate the effects of overfishing on populations of targeted species; these areas have varying degrees of fishing and recreational use restrictions. In order to assess MPA efficacy, it is important to determine the mechanisms by which the presence of MPAs affect reproductive output within and potentially even beyond their boundaries. I attempted to address this through studying the responses of rockfish (Sebastes spp.) larval abundances to the presence of the Cowcod Conservation Areas (CCAs) located within the Southern California …

Mapping The Spatial-Temporal Variation In Ras Ghanada Seagrass Meadows And Sand Shoals Between 1996, 2006 & 2012, Ryan Brookbank

HCNSO Student Theses and Dissertations

Seagrass meadows offshore Ras Ghanada, as elsewhere, are an important component to the ecosystem providing numerous benefits to both aquatic and human life. This work focused on mapping the spatial and temporal distribution of seagrass meadows offshore Ras Ghanada using aerial photography acquired in 1996 and high-resolution satellite images captured in 2006 and 2012. The movements of sand shoals were also tracked, so as to further explain the dynamics of this ecosystem, as it is the area between the shoal crests that hosts the best developed seagrass meadows. The natural limiting factor for seagrass on the Ras Ghanada coastal shelf …

Accounting For Spatial And Temporal Variation In Macroinvertebrate Community Abundances When Measuring The Food Supply Of Stream Salmonids, Nicholas Weber, Nicolaas Bouwes, Chris Jordan

Watershed Sciences Faculty Publications

The goal of salmonid habitat monitoring programs is to measure habitat attributes linked to salmonid productivity based on protocols that have sufficient precision to detect environmental variation at relevant spatial and temporal scales. Benthic macroinvertebrate community composition often is evaluated as part of habitat monitoring and assessment protocols, despite a lack of direct relationships between benthic composition and salmonid production. Macroinvertebrate drift provides a direct measure of the food resources available to stream salmonids, but drift is rarely evaluated as part of habitat monitoring protocols. This reluctance may stem from the complex spatial and temporal variability inherent in macroinvertebrate drift …

Small-Scale Farming Of Sandfish (Holothuria Scabra) At Unguja Ukuu, Zanzibar, Claire Hacker

Independent Study Project (ISP) Collection

The biological and social components of sandfish farming were studied at Unguja Ukuu, Zanzibar. Measurement of temperature and depth, along with quadrat sampling of substrate and sea cucumbers, led to recommendations for future management of depth, biomass per area, disease and crabs, and substrate. Interviews revealed the role and potential benefits of sea cucumber farming for communities. Several barriers to, and complications with, the expansion of sea cucumber farming were also identified. This study provided information for improvement of this farm and hoped to spread knowledge of sandfish farming to Zanzibaris, who may benefit economically from the practice.

Presence/Absence And Density Data For Epipelagic Tows From 48 Stations In The Northern Gulf Of Mexico From R/V Blazing Seven Cruises Lf2015a And Lf2015b June 2015 And July 2015, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Larval catch data after the oil spill is being used to improve our understanding of the causes of temporal variability as it relates to the Deep Water Horizon oil spill (DWHOS). Bongo and neuston net tows were conducted at 48 stations in both June and July, 2015 in the northern Gulf of Mexico. Cruise data collected at each site included latitude/longitude, date, time and environmental data (temperature, salinity, dissolved oxygen). The occurrence and density of selected epipelagic (e.g., billfishes, tunas, dolphinfishes, flyingfishes) and deep pelagic (e.g., lanternfishes, bristlemouths, marine hatchetfishes) fish larvae were quantified and are being used to extend …

Distribution And Condition Of Stony Corals In The Veracruz Reef System National Park: A Management Perspective, Mauricio López Padierna

HCNSO Student Theses and Dissertations

The Veracruz Reef System (VRS) is located in the southwestern Gulf of Mexico. It is comprised of 28 coral reefs in various stages of development and conservation. They are protected under the Parque Nacional Sistema Arrecifal Veracruzano National Park created in 1992. There are many threats to the reefs of the VRS, including the Port and city of Veracruz, which hosts half a million inhabitants and Mexico’s oldest active port. The inhabitants of Veracruz have used reef resources for thousands of years, as evidenced in archaeological sites on Sacrificios island, and constructions throughout the city, most notably in the San …

Recruitment Patterns Of Juvenile Fish At An Artificial Reef Area In The Gulf Of Mexico, Rachel Noel Arney, Catheline Y. M. Froehlich, Richard Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

In 2011 the Texas Parks and Wildlife Department and the Coastal Conservation Association of Texas deployed over 4,000 concrete culverts in a designated artificial reef area off Port Mansfield, Texas, to enhance habitat for sport fish species in the Gulf of Mexico. A study was conducted to assess juvenile fish recruitment at varying culvert densities within the artificial reef area. Standard monitoring units for the recruitment of reef fish (SMURFs) were used to sample juvenile fish, and these collections were compared with visual scuba surveys. The 0.027-m3 SMURFs were placed at four different culvert densities (0, 1–50, 51–100, and 101+ …

Diversity Of Deep-Sea Fishes Of The Easter Island Ecoregion, Erin E. Easton, Javier Sellanes, Carlos F. Gaymer, Naiti A. Morales, Matthias Gorny, Eric Berkenpas

School of Earth, Environmental, & Marine Sciences Faculty Publications

The Easter Island Ecoregion is in the center of the South Pacific gyre and experiences ultra-oligotrophic conditions that could make it highly susceptible to global change and anthropogenic activities, so it is imperative that these regions are characterized and studied so that conservation and sustainable management strategies can be developed. From the few studies from the region, we know that the coastal areas are relatively depauperate and have relatively high rates of endemism. Here, we present a brief report from the first video observations from this region of the deep-dwelling fishes from ROV exploration of benthic communities from …

The Fate Of Carbon In Sediments Of The Xingu And Tapajós Clearwater Rivers, Eastern Amazon, Dailson J. Bertassoli Jr., André O. Sawakuchi, Henrique O. Sawakuchi, Fabiano N. Pupim, Gelvam A. Hartmann, Michael M. Mcglue, Cristiano M. Chiessi, Matthias Zabel, Enno Schefuß, Tatiana S. Pereira, Rudney A. Santos, Samantha B. Faustino, Paulo E. Oliveira, Denise C. Bicudo

Earth and Environmental Sciences Faculty Publications

The Xingu and Tapajós rivers in the eastern Amazon are the largest clearwater systems of the Amazon basin. Both rivers have “fluvial rias” (i.e., lake-like channels) in their downstream reaches as they are naturally impounded by the Amazon mainstem. Fluvial rias are widespread in the Amazon landscape and most of the sedimentary load from the major clearwater and blackwater rivers is deposited in these channels. So far, little is known about the role of Amazon rias as a trap and reactor for organic sediments. In this study, we used organic and inorganic geochemistry, magnetic susceptibility, diatom, and pollen analyses in …

Composition And Quantification Of Polycyclic Aromatic Hydrocarbons In Deep-Pelagic Fauna, Cruises Dp01 And Dp02 From May 2015 - August 2015, Isabel C. Romero

DEEPEND Datasets

This data set includes the biological PAH (Polycyclic Aromatic Hydrocarbons) data of target species collected during the DP01 (May 1-8, 2015) and DP02 cruises (August 8-21, 2015) in the Northern Gulf of Mexico. The target fish species include Ceratoscopelus warmingii, Chaulidus spp., Diaphus spp., Argyropelecus spp, Lampanyctus alatus, and Sigma elongatum. Also, analysis of shrimp (Acanthephyra purpurea) and cephalopod (Grimalditeuthis bonplandi, Histioteuthis corona, Japetella diaphana) samples were conducted. PAHs were analyzed following modified EPA method 8270D and QA/QC strict protocols. Detection and quantification of PAHs were performed using a gas chromatograph/mass spectrometric detector (GC/MS/MS).

Inventory Of Gulf Oceanic Fauna Data Including Species, Weight, And Measurements. Cruises Dp01 May 1-8, 2015 And Dp02 August 9-21, 2015 R/V On The Point Sur In The Northern Gulf Of Mexico, April Cook, Tracey Sutton

DEEPEND Datasets

This data set includes the biological and environmental data for all of the species collected during the DP01 (May 2015) and DP02 cruises (August 2015). The main gear type used was a 10-m2 Multiple Opening Closing Net and Environmental Sensing System (MOCNESS). The MOCNESS was fitted with 6 nets which were opened according to the following depth scheme: net 0 from the surface to 1500m, net 1 from 1500-1200m, net 2 from 1200-1000m, net 3 from 1000-600m, net 4 from 600-200m, and net 5 from 200m to the surface. Two trawls were conducted at each station sampled to capture diel …

Sediment Burial Stress Response, Bio-Indicators And Thresholds For A Tropical Multi-Species Seagrass Assemblage: Report Of Theme 5 - Project 5.5.2 Prepared For The Dredging Science Node, John Statton, Kathryn Mcmahon, Roisin Mccallum, Gary Kendrick, Paul Lavery

Research outputs 2014 to 2021

Deterioration in water clarity by resuspension of dredged sediments is presumed to be a major mechanism by which dredging can impact seagrasses. This report presents findings from a controlled light experiment that aimed to determine the effects of low light stress on the growth of three seagrass species found in the northwest of Western Australia.

Aims

• To determine the effects of sediment burial stress under dredge-simulated conditions on the growth and health of three seagrass species found in the northwest of Western Australia.
• Provide guidance and protocols for the application of the research outputs (e.g. seagrass burial stress:response relationships, sub-lethal …

Experimental Impacts Of Climate Warming And Ocean Carbonation On Eelgrass Zostera Marina, Richard C. Zimmerman, Victoria J. Hill, Malee Jinuntuya, Billur Celebi, David Ruble, Miranda Smith, Tiffany Cedeno, W. Mark Swingle

OES Faculty Publications

CO₂ is a critical and potentially limiting substrate for photosynthesis of both terrestrial and aquatic ecosystems. In addition to being a climate-warming greenhouse gas, increasing concentrations of CO₂ will dissolve in the oceans, eliciting both negative and positive responses among organisms in a process commonly known as ocean acidification. The dissolution of CO₂ into ocean surface waters, however, also increases its availability for photosynthesis, to which the highly successful, and ecologically important, seagrasses respond positively. Thus, the process might be more accurately characterized as ocean carbonation. This experiment demonstrated that CO₂ stimulation of primary production enhances …

Multiple Mating By Females In The Chesapeake Bay Blue Crab Callinectes Sapidus Population, S. Wells, J. Mcconaugha, L. Horth

OES Faculty Publications

Mature females of the Chesapeake Bay (USA) blue crab Callinectes sapidus population mate multiple times. Microsatellite DNA analysis of sperm stored in the spermathecae has shown that virtually all (~97%, 104 out of 107) females collected in a 2009−2010 study mated with at least 2 males. Enumeration of stored sperm revealed that despite multiple mating, some females did not have enough sperm to fulfill their lifetime reproductive potential, suggesting that female blue crabs may experience varying levels of sperm limitation. This could result from multiple factors. The average body size of males in the population has decreased, which reduces the …

Habitat And Community Associations And The Population Dynamics Of A Temporary Coral-Reef Fish Ectoparasite, John Michael Artim

Student Theses and Dissertations

Coral reef is habitat constructed by the scleractinian coral after which the habitat is named. While scleractinian coral colonies are often meters in extent, they are composed of small individual organisms—typically on the scale of millimeters across. Coral reefs that include an abundance of many coral species support a diverse abundance of fish and conspicuous invertebrate life. These macro constituents of coral reefs—coral colonies, reef fish and conspicuous invertebrates—have been the primary focus for much of the existing body of coral reef ecology research. One of the inconspicuous and understudied coral reef invertebrate constituents are gnathiid isopod fish parasites. These …

Coral Bleaching And The Effect Of Disturbances On The Damselfish Community On Lizard Island, Australia, Alejandra Munoz

Independent Study Project (ISP) Collection

Coral reefs are characterized by their dynamic ecological processes that supports a high diversity through the recruitment of marine species and temporal disturbances that can have positive effects on the system. In the face of global climate change however, coral reefs face intense coral bleaching and increased degradation as they may begin to have less time to recover between bleaching events in the near future. Little is known on the long term effects of coral bleaching and habitat degradation on reef fish communities and much less is known about the mechanisms that bring about changes to reef fish assemblages.

This …

Fisheries Management Paper No.283 - Abalone Resource Of Western Australia Harvest Strategy 2106 - 2021, Department Of Fisheries Western Australia

Fisheries Management Papers

Harvest strategies for aquatic resources managed by the Western Australian Department of Fisheries (the Department) are formal documents prepared to support the decision-making processes required to ensure the management of these resources are consistent with the principles of Ecologically Sustainable Development (ESD). The objectives of ESD are reflected in the objects of the Fish Resources Management Act 1994 (FRMA) and Section 9 of the Aquatic Resources Management Act, which will replace the FRMA once proclaimed.

The publication of these strategies is intended to make the decision-making considerations and processes for the management of specified aquatic resources publicly transparent and provide …

Genetic Variability Within Seagrass Of The North West Of Western Australia: Report Of Theme 5 - Project 5.2 Prepared For The Dredging Science Node, Kathryn Mcmahon, Udhi Hernawan, Kor-Jent Van Dijk, Michelle Waycott, Ed Biffin, Richard Evans, Paul Lavery

Research outputs 2014 to 2021

This study was the first of its kind to examine the patterns of genetic diversity in seagrasses in the Pilbara region of WA. Three species were assessed: Halophila ovalis (6 populations), Halodule uninervis (8 populations) andThalassia hemprichii (3 populations) at a range of spatial scales, within a meadow (centimetres−metres), among meadows at a local scale (2−60 km) and among meadows at a regional scale (up to 500 km). Due to the varied distribution of species all species across the same spatial scale and range of environments could not be sampled, so a nested approach was designed, with sites …

A Marine Heat Wave Drives Massive Losses From The World’S Largest Seagrass Carbon Stocks, Ariane Arias-Ortiz, Oscar Serrano, Pere Masqué, Paul Lavery, Ute A. Mueller, Gary A, Kendrick, Mohammad Rozaimi, Alba Esteban, James W, Fourqurean, Núrià N. Marbà, Miquel-Angel Mateo, Kathy Murray, Michael Rule, Carlos M. Duarte

Research Datasets

The database compiles published data (in Arias-Ortiz et al., 2018) on biogeochemical characteristics (density, organic carbon, stable carbon isotopes and sediment grain size) of soils underneath seagrass meadows in Shark Bay, Western Australia. Pb-210 concentrations of the first 20 cm are included along with C-14 raw ages. The dataset compiles data for a total of 49 cores, 25 - 300 cm-long (11 cores with Pb-210 and C-14 data).

River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2017, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Gerry Pinto, Nisse Goldberg, Radha Pyati, Anthony Ouellette, Gretchen Bielmyer-Fraser, An-Phong Le, Brian P. Zoellner, Peter Bacopoulos

State of the River Report

No abstract provided.

Fish Assemblage Structure Indicates Limited Restoration Progress Over A Lustrum Of A Severely Degraded Estuary In Southern Tamaulipas, Mexico, Alejandro Fierro-Cabo, Carlos E. Cintra-Buenrostro

School of Earth, Environmental, & Marine Sciences Faculty Publications

Today the biggest incentive to attempt the restoration and protection of estuarine systems is their widely recognized ecological and economic importance. In the reconstruction of an estuary where the original aquatic communities disappeared before the restoration interventions, the fish assemblage is an adequate source of indicators of initial recovery. Following substantial restoration efforts, this study reports on the biannual for a lustrum monitoring and assessment of a severely degraded estuary (Garrapatas) in terms of its fish assemblage using a reference estuary (Barberena) in Tamaulipas, Mexico. Twenty fishes were associated with the restoring and reference estuaries. Species composition (richness, abundance, dominance) …

Impact Of The Capillary Pressure-Saturation Pore-Size Distribution Parameter On Geological Carbon Sequestration Estimates, Chu-Lin Cheng, Edmund Perfect, T. Edward Yu, Michael J. Gragg

School of Earth, Environmental, & Marine Sciences Faculty Publications

Cost estimates for geologic carbon sequestration (GCS) are vital for policy and decision makers evaluating carbon capture and storage strategies. Numerical models are often used in feasibility studies for the different stages of carbon injection and redistribution. Knowledge of the capillary pressure-saturation function for a selected storage rock unit is essential in applications used for simulating multiphase fluid flow and transport. However, the parameters describing these functions (e.g. the van Genuchten m pore size distribution parameter) are often not measured or neglected compared to other physical properties such as porosity and intrinsic permeability. In addition, the use of average …

Linear And Nonlinear Effects Of Temperature And Precipitation On Ecosystem Properties In Tidal Saline Wetlands, Laura C. Feher, Michael J. Osland, Kereen T. Griffith, James B. Grace, Rebecca J. Howard, Camille L. Stagg, Nicholas M. Enwright, Ken W. Krauss, Christopher A. Gabler, Richard H. Day, Kerrylee Rogers

School of Earth, Environmental, & Marine Sciences Faculty Publications

Climate greatly influences the structure and functioning of tidal saline wetland ecosystems. However, there is a need to better quantify the effects of climatic drivers on ecosystem properties, particularly near climate‐sensitive ecological transition zones. Here, we used climate‐ and literature‐derived ecological data from tidal saline wetlands to test hypotheses regarding the influence of climatic drivers (i.e., temperature and precipitation regimes) on the following six ecosystem properties: canopy height, biomass, productivity, decomposition, soil carbon density, and soil carbon accumulation. Our analyses quantify and elucidate linear and nonlinear effects of climatic drivers. We quantified positive linear relationships between temperature and above‐ground productivity …