Marine Biology Commons^™

Rescape: Transforming Coral-Reefscape Images For Quantitative Analysis, Zachary Ferris, Eraldo Ribeiro, Tomofumi Nagata, Robert Van Woesik

Ocean Engineering and Marine Sciences Faculty Publications

Ever since the first image of a coral reef was captured in 1885, people worldwide have been accumulating images of coral reefscapes that document the historic conditions of reefs. However, these innumerable reefscape images suffer from perspective distortion, which reduces the apparent size of distant taxa, rendering the images unusable for quantitative analysis of reef conditions. Here we solve this century-long distortion problem by developing a novel computer-vision algorithm, ReScape, which removes the perspective distortion from reefscape images by transforming them into top-down views, making them usable for quantitative analysis of reef conditions. In doing so, we demonstrate the …

Genomic Population Structure Of Great Hammerhead Sharks (Sphyrna Mokarran) Across The Indo-Pacific, Naomi L. Brunjes, Samuel M. Williams, Alexis L. Levengood, Matt K. Broadhurst, Vincent Raoult, Alastair V. Harry, Matias Braccini, Madeline E. Green, Julia L. Y. Spaet, Michael J. Travers, Bonnie J. Holmes

Fisheries Research Articles

Context

Currently, little information exists describing the population structure of great hammerhead sharks (Sphyrna mokarran) in Australian waters. Aims

This study used single nucleotide polymorphisms to investigate fine-scale population structure in S. mokarran across the Indo-Pacific. Methods

DNA was extracted from 235 individuals across six Australian locations and a Red Sea outgroup. Population parameters were calculated and visualised to test structuring across locations. Key results

No fine-scale population structuring was observed for S. mokarran across the Indo-Pacific. However, population structuring occurred for all Australian locations when compared to the Red Sea outgroup. Conclusions

Findings suggest a single stock …

Changes In Reef Tourism’S Adaptive Capacity After Severe Climate Disturbances, Henry Bartelet, Michele Barnes, Lalu Bakti, Graeme S. Cumming

Quantitative Methods and Information Technology Faculty Publications

Knowledge about adaptive capacity and its determinants has increased significantly over the last decade. However, most research on adaptive capacity has been static, not considering how adaptive capacity might change over time, particularly after severe disturbances. We studied the adaptive capacity dynamics of Asian-Pacific reef tourism operators affected by coral bleaching and tropical cyclones compared with a control group with non-affected operators. We found that impacts from tropical cyclones were associated with frequent changes in adaptive capacity. Notably, we found a reduction in tangible attributes (assets and flexibility) of adaptive capacity, whereas intangible attributes (agency and social organization) increased. Our …

The Social And Economic Dimensions Of One Of The World’S Longest-Operating Shark Fisheries, Matias Braccini, Maddison Watt, Clinton Syers, Nick Blay, Matthew Navarro, Michael Burton

Fisheries Research Articles

Context

Social and economic information is limited for coastal commercial and recreational fisheries, particularly shark fisheries, which are perceived as unsustainable and as targeting sharks for fins.

Aims

To characterise the social and economic dimensions of one of the world’s few long-standing sustainable shark fisheries.

Methods

We reviewed historic data and surveyed stakeholders to understand the economic and social dimensions of the shark fishery currently operating in Western Australia.

Key results

Since the fishery’s historic peak, there has been a substantial reduction in the number of operating vessels and ports due to management intervention. For the vessels that have remained, …

Assessing The Impacts Of Anthropogenic Activities On Coral Reef Health In Ushongo, Tanzania Using Coral Diversity And Parrotfish Abundance As Indicators, Thao Mai

Independent Study Project (ISP) Collection

Coral reefs, covering two-thirds of our oceans, are vital and diverse ecosystems, earning them the nickname of “rainforests of the sea”. Despite occupying only 1% of the ocean’s floor, they support 25% of all marine species, providing shelter, nursery ground and food, all the while also protecting the coast and providing job opportunities for local communities. Considered keystone species, coral reefs are highly sensitive to disturbances caused by pollution, climate change, but also anthropogenic activities such as coastal development, destructive fishing practices and tourism, endangering their existence and the entire marine ecosystem. Parrotfish, a crucial resident of these ecosystems, often …

Early Report Of A Microcosm Of The Fourth Major Global Bleaching Event: A Comprehensive Survey Of Coral Bleaching At Chumbe Island Coral Park, Zanzibar, Christian Boudreaux

Independent Study Project (ISP) Collection

Coral reefs harbor a wealth of the biodiversity present in the ocean. They provide an array of ecological and economic services that make them crucial to the function of a healthy ocean and prosperous coastal communities. Due to an array of anthropogenic stressors, including an increase in ocean temperatures as a result of climate change, reefs have been devastated worldwide. This is, in large part, due to the process of coral bleaching, the expelling of symbiont algae which the coral needs to produce energy, for an extended period until death. This study surveyed bleaching and death at a deeper and …

Assessing The Impact Of Climate Change On Harbor Seals: Haul-Out Patterns In Iceland Using Cmip6 Projections, Colin Lau

Independent Study Project (ISP) Collection

Harbor seals (Phoca vitulina) are known to exhibit a preference for specific environmental and weather conditions when hauling out, particularly during the pupping and molting cycles during summer. Climate change is projected to have a significant impact on the haul-out patterns and site conditions of harbor seals in Iceland, which could further diminish their dwindling population. A comprehensive literature review was conducted to identify and discuss the environmental variables that can affect haul-out probability. Among them, surface wind speed and air temperature are reported to have the biggest influence on harbor seal haul-out numbers between May and August. Climate projections …

Feasibility Study Of Coral Farming In Southwest Madagascar: In-Situ And Ex-Situ Approaches, Raquel Reis

Independent Study Project (ISP) Collection

The southwest coast of Madagascar is home to hundreds of miles of coral reefs that for decades have been susceptible to intense degradation due to anthropogenic influences on marine environments. For reasons involving economic opportunity, conservation strategies, human health safeguarding and advancements to coral research, coral aquaculture in the Toliara region presents an opportunity to restore quality of life and the environment. Other countries in the west Indian ocean have seen great success in coral aquaculture; however, Madagascar, despite having ideal natural circumstances, has not deeply explored coral aquaculture. This review presents an investigation into the feasibility of coral farming, …

A Study Of Anthropogenic Impacts On Echinoderms In The Jambiani Intertidal Area, Zanzibar, Amaury O. Halley

Independent Study Project (ISP) Collection

The coastal region of Jambiani, Unguja, hosts a rich diversity of marine life within its extensive intertidal zones. Despite its ecological significance, this area is increasingly exposed to anthropogenic disturbances due to increased human activities. This study examines the impacts of these disturbances on the biodiversity, zonation, and species abundance of echinoderms in the intertidal habitats of Jambiani. Through a comprehensive field study involving fifteen transects and detailed substrate analysis, the project evaluated the distribution and abundance of echinoderm species and assessed the influence of human activities such as seaweed farming, anchor damage, and beach trampling on these communities. The …

Community Knowledge Of Shark Ecology, Abundance, And Species Composition In Wichubwala, Nalunega, And Porvenir Communities In The Guna Yala Comarca, Panamá, Kayley Jane Porter

Independent Study Project (ISP) Collection

Sharks play a critical role in marine ecosystems as apex predators that exert top-down control of lower trophic levels. In recent decades, global shark populations have declined to unprecedented levels, triggering a cascade effect that threatens ecosystem functioning and, therefore, coastal community livelihoods that rely on marine resources for food and income. It is known that shark populations are vulnerable and on the decline due to anthropogenic stressors such as fishing and coastal development, but shark species composition and abundance are difficult to monitor due to the evasive nature of sharks, the often remote and inaccessible location of certain shark …

Time Series Modeling To Ascertain Age In Fisheries Management, Kathleen Sue Kirch

OES Theses and Dissertations

The ability to assign accurate ages of fish is important to fisheries management. Accurate ageing allows for the most reliable age-based models to be used to support sustainability and maximize economic benefit. Structures used to age include bones, scales, and most commonly ear bones (otoliths). Assigning age relies on validating putative annual marks by evaluating accretional material laid down in patterns in fish otoliths, typically by marginal increment analysis. These patterns often take the shape of a sawtooth wave with an abrupt drop in accretion yearly to form an annual band and are typically validated qualitatively. Researchers have shown keen …

Spatial Distribution And Movement Of Atlantic Tarpon (Megalops Atlanticus) In The Northern Gulf Of Mexico, Shane A. Stephens, Michael A. Dance, Michelle Zapp Sluis, Richard J. Kline, Matthew K. Streich, Gregory R. Stunz, Aaron J. Adams, R. J. David Wells, Jay R. Rooker

School of Earth, Environmental, & Marine Sciences Faculty Publications

Atlantic tarpon (Megalops atlanticus) are capable of long-distance migrations (hundreds of kilometers) but also exhibit resident behaviors in estuarine and coastal habitats. The aim of this study was to characterize the spatial distribution of juvenile tarpon and identify migration pathways of adult tarpon in the northern Gulf of Mexico. Spatial distribution of juvenile tarpon was investigated using gillnet data collected by Texas Parks and Wildlife Department (TPWD) over the past four decades. Generalized additive models (GAMs) indicated that salinity and water temperature played a significant role in tarpon presence, with tarpon occurrences peaking in the fall and increasing …

A 2,000-Year Record Of Eelgrass (Zostera Marina L.) Colonization Shows Substantial Gains In Blue Carbon Storage And Nutrient Retention, Martin Dahl, Martin Gullström, Irene Bernabeu, Oscar Serrano, Carmen Leiva-Dueñas, Hans W. Linderholm, Maria E. Asplund, Mats Björk, Tinghai Ou, J. Robin Svensson, Elinor Andrén, Thomas Andrén, Sanne Bergman, Sara Braun, Anneli Eklöf, Zilvinas Ežerinskis, Andrius Garbaras, Petter Hällberg, Elin Löfgren, Malin E. Kylander, Pere Masqué, Justina Šapolaitė, Rienk Smittenberg, Miguel A. Mateo

Research outputs 2022 to 2026

Assessing historical environmental conditions linked to habitat colonization is important for understanding long-term resilience and improving conservation and restoration efforts. Such information is lacking for the seagrass Zostera marina, an important foundation species across cold-temperate coastal areas of the Northern Hemisphere. Here, we reconstructed environmental conditions during the last 14,000 years from sediment cores in two eelgrass (Z. marina) meadows along the Swedish west coast, with the main aims to identify the time frame of seagrass colonization and describe subsequent biogeochemical changes following establishment. Based on vegetation proxies (lipid biomarkers), eelgrass colonization occurred about 2,000 years ago after geomorphological changes …

Exploitation Of Environmental Dna (Edna) For Ecotoxicological Research: A Critical Review On Edna Metabarcoding In Assessing Marine Pollution, Sakib Tahmid Rishan, Richard Kline, Md Saydur Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

Highlights

• eDNA describes the genetic material of organisms present in aquatic environments.

• eDNA metabarcoding characterizes DNA of various marine species from a single sample.

• eDNA has enormous promise for ecotoxicological research in marine environments.

Abstract

The rise in worldwide population has led to a noticeable spike in the production, consumption, and transportation of energy and food, contributing to elevated environmental pollution. Marine pollution is a significant global environmental issue with ongoing challenges, including plastic waste, oil spills, chemical pollutants, and nutrient runoff, threatening marine ecosystems, biodiversity, and human health. Pollution detection and assessment are crucial to understanding the state of …

A Global Database Of Dissolved Organic Matter (Dom) Concentration Measurements In Coastal Waters (Coastdom V1), Christian Lønborg, Cátia Carreira, Gwenaël Abril, Susana Agustí, Valentina Amaral, Agneta Andersson, Javier Arístegui, Punyasloke Bhadury, Mariana B. Bif, Alberto V. Borges, Steven Bouillon, Maria L. I. Calleja, Luiz C. Cotovicz, Stefano Cozzi, Maryló Doval, Carlos M. Duarte, Bradley Eyre, Cédric G. Fichot, E. Elena García-Martín, Alexandra Garzon-Garcia, Michele Giani, Rafael Gonçalves-Araujo, Renee Gruber, Dennis A. Hansell, Fuminori Hashihama, Ding He, Johnna M. Holding, William R. Hunter, J. Severino P. Ibánhez, Valeria Ibello, Shan Jiang, Guebuem Kim, Katja Klun, Piotr Kowalczuk, Atsushi Kubo, Choon-Weng Lee, Cláudia B. Lopes, Federica Maggioni, Paolo Magni, Celia Marrase, Patrick Martin, S. Leigh Mccallister, Roisin Mccallum, Patricia M. Medeiros, Xosé A. G. Morán, Frank E. Muller-Karger, Allison Myers-Pigg, Marit Norli, Joanne M. Oakes, Helena Osterholz, Hyekyung Park, Maria L. Paulsen, Judith A. Rosentreter, Jeff D. Ross, Digna Rueda-Roa, Chiara Santinelli, Yuan Shen, Eva Teira, Tinkara Tinta, Guenther Uher, Masahide Wakita, Nicholas Ward, Kenta Watanabe, Yu Xin, Youhei Yamashita, Liyang Yang, Jacob Yeo, Huamao Yuan, Qiang Zheng, Xosé A. Álvarez-Salgado

Research outputs 2022 to 2026

Measurements of dissolved organic carbon (DOC), nitrogen (DON), and phosphorus (DOP) concentrations are used to characterize the dissolved organic matter (DOM) pool and are important components of biogeochemical cycling in the coastal ocean. Here, we present the first edition of a global database (CoastDOM v1; available at 10.1594/PANGAEA.964012, Lonborg et al., 2023) compiling previously published and unpublished measurements of DOC, DON, and DOP in coastal waters. These data are complemented by hydrographic data such as temperature and salinity and, to the extent possible, other biogeochemical variables (e.g. chlorophyll a, inorganic nutrients) and the inorganic carbon system (e.g. dissolved inorganic carbon …

Detection And Monitoring Of Plant Pathogens And Pests, Walter F. Mahaffee, Lindsey D. Thiessen, Kevin M. King, Robin A. Choudhury

School of Earth, Environmental, & Marine Sciences Faculty Publications

No abstract provided.

Long Term Sustainable Use Of Demersal Gillnet And Demersal Longline In Western Australia’S Temperate Shark Fisheries - Fisheries Research Report 340, Matias Braccini, Jack Parker, Daniela Waltrick, Maddison Watt, Nick Blay, Clinton Syers

Fisheries Research Reports

The Temperate Demersal Gillnet and Demersal Longline Fisheries (TDGDLF) are one of the main commercial shark fisheries in Australia. Most fishers in the TDGDLF use demersal gillnets to target sharks with scalefish taken in smaller amounts. Demersal longlines are also permitted but are not widely used. Demersal gillnets are size selective, but they do not necessarily discriminate among species, catching target and non-target species.

The Western Australian Fishing Industry Council (WAFIC) received funding as part of the Australian Government’s Our Marine Parks Grants Program to undertake research on the TDGDLF. This project was administered under the direction of a steering …

Local Habitat Composition And Complexity Outweigh Seascape Effects On Fish Distributions Across A Tropical Seascape, Molly Moustaka, Richard D. Evans, Gary A. Kendrick, Glenn A. Hyndes, Michael V. W. Cuttler, Tahlia J. Bassett, Michael J. O’Leary, Shaun K. Wilson

Research outputs 2022 to 2026

Context: The distribution of animals is influenced by a complex interplay of landscape, environmental, habitat, and anthropogenic factors. While the effects of each of these forces on fish assemblages have been studied in isolation, the implications of their combined influence within a seascape remain equivocal. Objectives: We assessed the importance of local habitat composition, seascape configuration, and environmental conditions for determining the abundance, diversity, and functional composition of fish assemblages across a tropical seascape. Methods: We quantified fish abundance in coral, macroalgal, mangrove, and sand habitats throughout the Dampier Archipelago, Western Australia. A full-subsets modelling approach was used that incorporated …

Salmonella In The Environment: A Review On Ecology, Antimicrobial Resistance, Seafood Contaminations, And Human Health Implications, Mohammad Maruf Billah, Md Saydur Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

Salmonella is a genus of Gram-negative bacteria that is responsible for numerous food poisoning outbreaks worldwide. With 93.8 million food-borne illnesses and 155,000 fatalities annually, it has emerged as a significant global public health issue. There are currently more than 2,500 distinct Salmonella serotypes, and more than half of them are associated with Salmonella enterica. An increasing global public health concern for humans and animals is antimicrobial resistance by Salmonella species worldwide. Salmonella infections can be lethal; conditioned with an increased prevalence of multi-drug resistant (MDR) strains in the future. The emergence of MDR Salmonella serotypes is considerably …

A Computational Profile Of Invasive Lionfish In Belize: A New Insight On A Destructive Species, Joshua E. Balan

The Journal of Purdue Undergraduate Research

Since their discovery in the region in 2009, invasive Indonesian-native lionfish have been taking over the Belize Barrier Reef. As a result, populations of local species have dwindled as they are either eaten or outcompeted by the invaders. This has led to devastating losses ecologically and economically; massive industries in the local nations, such as fisheries and tourism, have suffered greatly. Attempting to combat this, local organizations, from nonprofits to ecotourism companies, have been manually spear-hunting them on scuba dives to cull the population. One such company, Reef Conservation Institute (ReefCI), operating out of Tom Owens Caye outside of Placencia, …

Redesign And De Novo Design Of Circular Blue Bioindustry, Wei Zhang, Shufeng Zhang, Hantao Zhou, Minhan Dai

Bulletin of Chinese Academy of Sciences (Chinese Version)

The future marine bioindustry, which features advanced green intelligent biomanufacturing and high-value marine bioproducts, is a strategically emerging marine industry. This study proposes a new industrial development model for the circular blue bioindustry, founded on simultaneously optimizing the sustainable utilization of marine bioresources and protecting the ecological environment. Through in-depth analysis of the current situation, challenges, and potential development opportunities of the global and Chinese marine bioindustries underpinning sustainable development, theoretical framework, approaches and implementation pathways have been established to redesign the existing marine bioindustry and de novo design of the emerging marine bioindustry. Future key development priorities are suggested …

Fauna, Flora, And Land Cover Changes Over The Last Two Decades In The Mobile-Tensaw River Delta, Gabriel De Oliveria, Steven R. Schultze, Guilherme Mataveli

Technical Reports

A technical report documenting ecosystem changes to the Mobile-Tensaw River Delta region due to urban expansion over approximately two decades (2001-2019).

199965, David Kerstetter

PERC Albacore sPAT Data

Datasets (and supporting material) from 4sPAT electronic tags deployed on albacore caught by pelagic longline gear in the western North Atlantic.

199953, David Kerstetter

PERC Albacore sPAT Data

Datasets (and supporting material) from 4sPAT electronic tags deployed on albacore caught by pelagic longline gear in the western North Atlantic.

199949, David Kerstetter

PERC Albacore sPAT Data

Datasets (and supporting material) from 4sPAT electronic tags deployed on albacore caught by pelagic longline gear in the western North Atlantic.

199946, David W. Kerstetter

PERC Albacore sPAT Data

Datasets (and supporting material) from 4sPAT electronic tags deployed on albacore caught by pelagic longline gear in the western North Atlantic.

Targeting Ocean Conservation Outcomes Through Threat Reduction, Joseph A. Turner, Malcolm Starkey, Nicholas K. Dulvy, Frank Hawkins, Louise Mair, Adeline Serckx, Thomas Brooks, Beth Polidoro, Stuart H. M. Butchart, Kent Carpenter, Minna Epps, Rima W. Jabado, Nicholas B. W. Macfarlane, Leon Bennun

Biological Sciences Faculty Publications

Nations have committed to reductions in the global rate of species extinctions through the Sustainable Development Goals 14 and 15, for ocean and terrestrial species, respectively. Biodiversity loss is worsening despite rapid growth in the number and extent of protected areas, both at sea and on land. Resolving this requires targeting the locations and actions that will deliver positive conservation outcomes for biodiversity. The Species Threat Abatement and Restoration (STAR) metric, developed by a consortium of experts, quantifies the contributions that abating threats and restoring habitats in specific places offer towards reducing extinction risk based on the IUCN Red List …

Mangroves Of The Warm Temperate Northwest Atlantic, Daniel A. Friess, Ena L. Suárez, Anna R. Armitage, Cheryl Doughty, Laura C. Feher, Ilka C. Feller, Alejandro Fierro, Kara R. Radabaugh, Lorae T. Simpson, William C. V Vervaeke, Carlos Zamora-Tovar

School of Earth, Environmental, & Marine Sciences Faculty Publications

The ‘Mangroves of the Warm Temperate Northwest Atlantic’ province is a regional ecosystem subgroup (level 4 unit of the IUCN Global Ecosystem Typology). It includes the marine ecoregions of Carolinian and Northern Gulf of Mexico. The biota is characterized by 3 species of mangroves: Avicennia germinans, Laguncularia racemosa, and Rhizophora mangle, and 1 mangrove associate Conocarpus erectus, though not all species are equally distributed throughout the province. Mangroves in this province cross the USA and Mexico and are quite unique, as they exist at the latitudinal range limit of the mangrove ecosystem. The majority of mangroves in this province are …

Integrating Remote Sensing With Ground-Based Observations To Quantify The Effects Of An Extreme Freeze Event On Black Mangroves (Avicennia Germinans) At The Landscape Scale, Melinda Martinez, Michael J. Osland, James B. Grace, Nicholas M. Enwright, Camille L. Stagg, Camille L. Stagg, Simen Kaalstad, Gordon H. Anderson, Elena A. Flores, Alejandro Fierro-Cabo

School of Earth, Environmental, & Marine Sciences Faculty Publications

Climate change is altering the frequency and intensity of extreme weather events. Quantifying ecosystem responses to extreme events at the landscape scale is critical for understanding and responding to climate-driven change but is constrained by limited data availability. Here, we integrated remote sensing with ground-based observations to quantify landscape-scale vegetation damage from an extreme climatic event. We used ground- and satellite-based black mangrove (Avicennia germinans) leaf damage data from the northern Gulf of Mexico (USA and Mexico) to examine the effects of an extreme freeze in a region where black mangroves are expanding their range. The February 2021 …

Managing Inter-Organizational Trust And Risk Perceptions In Transboundary Fisheries Governance Networks, Evelyn Roozee, Dongkyu Kim, Antonia Sohns, Jasper R. De Vries, Owen Temby, Gordon M. Hickey

School of Earth, Environmental, & Marine Sciences Faculty Publications

Transboundary fishery management represents a significant governance challenge that requires ongoing inter-organizational communication, collaboration, and collective action to ensure sustainability. Previous research suggests that different dimensions of perceived risk, trust, and control interact in complex ways to affect inter-organizational collaborative performance, providing an administrative ‘architecture’ that enables partners to share resources, engage in teamwork, resolve conflict, and coordinate tasks and responsibilities while also allaying their concerns about the alliance. However, the extent to which different control mechanisms influence trust and mitigate the perceived risks of collaboration between the diverse organizations involved in transboundary fisheries management remains unclear. This paper presents …